HHsearch alignment for GI: 254780741 and conserved domain: cd06824
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=96.21 E-value=0.11 Score=30.72 Aligned_cols=174 Identities=14% Similarity=0.126 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HHHC--CCCC-CCEEECCCCCHHH
Q ss_conf 9999999999998533--6986999541059999999998518748980799998-9873--6880-1088537778034
Q gi|254780741|r 12 QKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LGHE--KFGG-ETHAYNVAYKDCE 85 (367)
Q Consensus 12 ~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la~~--g~~~-~~i~~~~~~~~~e 85 (367)
T Consensus 7 ~~i~~~I~~a~~~~gR~~~~V~LiaVSK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs-NK 85 (224)
T cd06824 7 AQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGPIQS-NK 85 (224)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCH-HH
T ss_conf 99999999999983879576599998899899999999986995247870999999999853378955999775520-16
Q ss_pred HHHHHCCCCEE-EECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HH
Q ss_conf 78861388689-85672059999998612345--6148996357744310124557864357427888874-------31
Q gi|254780741|r 86 IDAVLSNCDTI-IFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EI 155 (367)
Q Consensus 86 l~~a~~~~~~i-~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~ 155 (367)
T Consensus 86 vk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~------------s~E~~K~G~~~~e~~~~~~~i~~~~~ 153 (224)
T cd06824 86 TKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNI------------SGEDSKSGVAPEDAAELAEAISQLPN 153 (224)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 799998521897645099999999999972998628999853------------78500269899999999999995699
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEC
Q ss_conf 4960665305656661478999999999898650---8875087533
Q gi|254780741|r 156 KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF---ITQIEWISLG 199 (367)
Q Consensus 156 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~---~~~l~~idiG 199 (367)
T Consensus 154 l~i~GLMti-~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMG 199 (224)
T cd06824 154 LRLRGLMAI-PAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMG 199 (224)
T ss_pred CCEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 842667765-7999885789999999999999998517998957770