HHsearch alignment for GI: 254780741 and conserved domain: cd06827
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.50 E-value=3.2e-10 Score=86.96 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=163.2
Q ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----HHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECCCCC
Q ss_conf 97799999999999998533698699954105999----99999985187489807999989873-68801088537778
Q gi|254780741|r 8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAW----GMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNVAYK 82 (367)
Q Consensus 8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~----~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~~~~ 82 (367)
T Consensus 5 eIdl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~-~~~faVa~~~Ea~~LR~~g~~~~IlvL~g~~~ 81 (354)
T cd06827 5 TIDLAALRHNLRLVRELA--PNSKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPILLLEGFFS 81 (354)
T ss_pred EEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHC-CCEEEEEEHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 997999999999999768--998399999846364869999999856-99799948999999997399986699937899
Q ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-------H
Q ss_conf 034788613886898567205999999861234561489963577443101245578643574278888743-------1
Q gi|254780741|r 83 DCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-------I 155 (367)
Q Consensus 83 ~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-------~ 155 (367)
T Consensus 82 ~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~vhlki------------DTG--M~RlG~~~~e~~~~~~~l~~~~~ 147 (354)
T cd06827 82 ADELPLAAEYNLWTVVHSEEQLEWLEQAALSKPLNVWLKL------------DSG--MHRLGFSPEEYAAAYQRLKASPN 147 (354)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8999999984998999989999999862848995499997------------578--88578998999999999985899
Q ss_pred CCCEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EE-EE
Q ss_conf 4960665305656-661478999999999898650887508753377666445568078999999875421650-45-30
Q gi|254780741|r 156 KNVNGLMFHNNCE-NKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ-IY-LE 232 (367)
Q Consensus 156 ~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~-iE 232 (367)
T Consensus 148 l~~~gi~SHfa~AD~~~~~~t~~Q~~~F~~~~~~~~~~~h~aNSa~~l~~~~~~~d~------VR~Gi~lYG~~P~~~~~ 221 (354)
T cd06827 148 VASIVLMTHFACADEPDSPGTAKQLAIFEQATAGLPGPRSLANSAAILAWPEAHGDW------VRPGIMLYGASPFADKS 221 (354)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCCCCE------ECCCEEEECCCCCCCCC
T ss_conf 856899840245788887899999999999971488666671788774595224772------34674615688776666
Q ss_pred HHHHCCCCCEEEEEEEEEEECC--C------CCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 0220145741888788786304--4------333--------43333565656640013455300024786459986233
Q gi|254780741|r 233 PGEAIVTNTTTLNTTVLDISEN--I------KNL--------VIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRS 296 (367)
Q Consensus 233 PGR~lv~~ag~lv~~V~~~K~~--~------~~~--------v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~ 296 (367)
T Consensus 222 ~~~~~Lkpv~sl~a~v~~vk~v~~G~~VgYg~t~~a~~~~~iA~vpiGYaDG~~R~~s~~-~~V~i---~G~~~pivGrI 297 (354)
T cd06827 222 GADLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGYPRHAPSG-TPVLV---NGQRTPLVGRV 297 (354)
T ss_pred CCCCCCEEEEEEEEEEEEEEECCCCCCEECCCCEECCCCCEEEEEEEECCCCCCCCCCCC-CEEEE---CCEEEEEECEE
T ss_conf 545585465899998457897699992316974113667359998304114635315799-78999---99997765675
Q ss_pred CCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf 36664552135-66778879899996887
Q gi|254780741|r 297 CLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367)
Q Consensus 297 C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367)
T Consensus 298 ~M--D~~~vDvt~~~~~~~GD~V~l~G~~ 324 (354)
T cd06827 298 SM--DMLTVDLTDLPEAKVGDPVELWGKG 324 (354)
T ss_pred EC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 05--3589988899778999999996899