HHsearch alignment for GI: 254780741 and conserved domain: cd06841

>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00  E-value=0  Score=558.06  Aligned_cols=338  Identities=20%  Similarity=0.304  Sum_probs=287.5

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC
Q ss_conf             88856897799999999999998533--6986999541059999999998518748980799998987-36880108853
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~   78 (367)
T Consensus         5 ~gTP~yv~d~~~l~~n~~~l~~~~~~~~p~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~g~~~~~Ii~~   84 (379)
T cd06841           5 YGSPFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKRIIFN   84 (379)
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCEEEEC
T ss_conf             09988998699999999999999876089829999962175899999999839985998999999999859993229988


Q ss_pred             -CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf             -77780347886138868985672059999998612345--6148996357744310124557864357427888874--
Q gi|254780741|r   79 -VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES--  153 (367)
Q Consensus        79 -~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~--  153 (367)
T Consensus        85 gp~K~~~~i~~a~~~g~~i~vDs~~El~~l~~~a~~~~~~~~i~lRvn~~~~---------~~~~skFG~~~~~~~~~l~  155 (379)
T cd06841          85 GPYKSKEELEKALEEGALINIDSFDELERILEIAKELGRVAKVGIRLNMNYG---------NNVWSRFGFDIEENGEALA  155 (379)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC---------CCCCCCCCCCHHHHHHHHH
T ss_conf             9989879999999859930448889999999999864997479999658888---------8864346999899999999


Q ss_pred             --------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCC----------CCCCHHH
Q ss_conf             --------314960665305656661478999999999898650-887508753377666445----------5680789
Q gi|254780741|r  154 --------EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF-ITQIEWISLGGGIHFTDK----------DYPVKDF  214 (367)
Q Consensus       154 --------~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~-~~~l~~idiGGG~~~~~~----------~~~~~~~  214 (367)
T Consensus       156 ~~~~~~~~~~l~~~GlhfHvGS~~~d~~~~~~~~~~~~~~~~~~~~~~~~~idiGGGf~~~~~~~~~~~~~~~~~~~~~~  235 (379)
T cd06841         156 ALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRLFGLELEYLDLGGGFPAKTPLSLAYPQEDTVPDPEDY  235 (379)
T ss_pred             HHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99987545897299999888987589899999999999999996199960998078757677765456788899999999


Q ss_pred             HHHHHHHHHHC------CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf             99999875421------65045300220145741888788786304-43334333356565664001345530002---4
Q gi|254780741|r  215 CQRLKEFSEKY------SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---N  284 (367)
Q Consensus       215 ~~~i~~~~~~~------~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---~  284 (367)
T Consensus       236 ~~~i~~~l~~~~~~~~~~~~li~EPGR~lv~~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~  315 (379)
T cd06841         236 AEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGRNIAVTDAGINNIPTIFWYHHPILVLRPGKED  315 (379)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCEEEEEEEEEEEEECCCEEEEECCCCCCCCCHHHCCCCEEEECCCCCC
T ss_conf             99999999985510278866998167111114157999999999609927999826645771746569877955788888


Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf             78645998623336664552135667788798999968870223243476899887799996799
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG  349 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g  349 (367)
T Consensus       316 ~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~f~-~prPa~vlv~~~g  379 (379)
T cd06841         316 PTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQFI-RPRPAVYLIDNNG  379 (379)
T ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCC-CCCCCEEEEECCC
T ss_conf             983089998878663569903513789999999978783754574618788-8778299993989