HHsearch alignment for GI: 254780741 and conserved domain: cd06841
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=0 Score=558.06 Aligned_cols=338 Identities=20% Similarity=0.304 Sum_probs=287.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC
Q ss_conf 88856897799999999999998533--6986999541059999999998518748980799998987-36880108853
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~ 78 (367)
T Consensus 5 ~gTP~yv~d~~~l~~n~~~l~~~~~~~~p~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~g~~~~~Ii~~ 84 (379)
T cd06841 5 YGSPFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKRIIFN 84 (379)
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCEEEEC
T ss_conf 09988998699999999999999876089829999962175899999999839985998999999999859993229988
Q ss_pred -CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf -77780347886138868985672059999998612345--6148996357744310124557864357427888874--
Q gi|254780741|r 79 -VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-- 153 (367)
Q Consensus 79 -~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-- 153 (367)
T Consensus 85 gp~K~~~~i~~a~~~g~~i~vDs~~El~~l~~~a~~~~~~~~i~lRvn~~~~---------~~~~skFG~~~~~~~~~l~ 155 (379)
T cd06841 85 GPYKSKEELEKALEEGALINIDSFDELERILEIAKELGRVAKVGIRLNMNYG---------NNVWSRFGFDIEENGEALA 155 (379)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC---------CCCCCCCCCCHHHHHHHHH
T ss_conf 9989879999999859930448889999999999864997479999658888---------8864346999899999999
Q ss_pred --------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCC----------CCCCHHH
Q ss_conf --------314960665305656661478999999999898650-887508753377666445----------5680789
Q gi|254780741|r 154 --------EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF-ITQIEWISLGGGIHFTDK----------DYPVKDF 214 (367)
Q Consensus 154 --------~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~-~~~l~~idiGGG~~~~~~----------~~~~~~~ 214 (367)
T Consensus 156 ~~~~~~~~~~l~~~GlhfHvGS~~~d~~~~~~~~~~~~~~~~~~~~~~~~~idiGGGf~~~~~~~~~~~~~~~~~~~~~~ 235 (379)
T cd06841 156 ALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRLFGLELEYLDLGGGFPAKTPLSLAYPQEDTVPDPEDY 235 (379)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99987545897299999888987589899999999999999996199960998078757677765456788899999999
Q ss_pred HHHHHHHHHHC------CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 99999875421------65045300220145741888788786304-43334333356565664001345530002---4
Q gi|254780741|r 215 CQRLKEFSEKY------SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---N 284 (367)
Q Consensus 215 ~~~i~~~~~~~------~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---~ 284 (367)
T Consensus 236 ~~~i~~~l~~~~~~~~~~~~li~EPGR~lv~~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~ 315 (379)
T cd06841 236 AEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGRNIAVTDAGINNIPTIFWYHHPILVLRPGKED 315 (379)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCEEEEEEEEEEEEECCCEEEEECCCCCCCCCHHHCCCCEEEECCCCCC
T ss_conf 99999999985510278866998167111114157999999999609927999826645771746569877955788888
Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 78645998623336664552135667788798999968870223243476899887799996799
Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG 349 (367)
Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g 349 (367)
T Consensus 316 ~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~f~-~prPa~vlv~~~g 379 (379)
T cd06841 316 PTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQFI-RPRPAVYLIDNNG 379 (379)
T ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCC-CCCCCEEEEECCC
T ss_conf 983089998878663569903513789999999978783754574618788-8778299993989