HHsearch alignment for GI: 254780741 and conserved domain: cd06842

>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00  E-value=0  Score=526.12  Aligned_cols=331  Identities=18%  Similarity=0.205  Sum_probs=253.6

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-
Q ss_conf             88568977999999999999985336--986999541059999999998518748980799998987-36880108853-
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNA--GVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-   78 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~--~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-   78 (367)
T Consensus         9 GTP~yVyd~~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~~~~il~~l~~~G~g~Dv~S~gEl~~al~aG~~~~~Iv~~g   88 (423)
T cd06842           9 GSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVRGDRIVATG   88 (423)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECC
T ss_conf             99979976999999999999998755998269998610689999999998499289869999999998599879989738


Q ss_pred             CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCC---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf             777803478861388689856720599999986123---4561489963577443101245578643574278888743-
Q gi|254780741|r   79 VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKL---HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-  154 (367)
Q Consensus        79 ~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~---~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-  154 (367)
T Consensus        89 ~~Ks~~ei~~Ai~~gv~i~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~----------~~~~~sKFGi~~~~~~~~l~  158 (423)
T cd06842          89 PAKTDEFLWLAVRHGATIAVDSLDELDRLLALARGYTTGPARVLLRLSPF----------PASLPSRFGMPAAEVRTALE  158 (423)
T ss_pred             CCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCC----------CCCCCCCCCCCHHHHHHHHH
T ss_conf             98998999999985998997899999999999876079962799986789----------99999999899999999999


Q ss_pred             -------HCCCEEEEECCCCCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CH-----------
Q ss_conf             -------149606653056566614--78999999999898650887508753377666445568--07-----------
Q gi|254780741|r  155 -------IKNVNGLMFHNNCENKSF--LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYP--VK-----------  212 (367)
Q Consensus       155 -------~~~i~Gih~H~gs~~~~~--~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~--~~-----------  212 (367)
T Consensus       159 ~~~~~~~~l~~~GlH~HiGs~~~~~~~~a~~~~~~~~-~~~~~~g~~l~~idiGGGfgv~Y~~~~~~~~~~~~~~~~~~~  237 (423)
T cd06842         159 RLAQLRERVRLVGFHFHLDGYSAAQRVAALQECLPLI-DRARALGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALY  237 (423)
T ss_pred             HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9996399983689888648877278999999999999-999952999778971899776776631023443333101110


Q ss_pred             -------------------------------HHHHH-----------HHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEE
Q ss_conf             -------------------------------89999-----------998754216504530022014574188878878
Q gi|254780741|r  213 -------------------------------DFCQR-----------LKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLD  250 (367)
Q Consensus       213 -------------------------------~~~~~-----------i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~  250 (367)
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~iEPGR~lva~aG~llt~V~~  317 (423)
T cd06842         238 GYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRDNGITLALEPGRALLDQCGLTVARVAF  317 (423)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEEEEEEE
T ss_conf             23543211122334566533343456752778999987412222245777642568559976655652255249999999


Q ss_pred             EECC-CCCC-CCCCCCCCCCCCCCC-CCCCCCC------CCCCCCCEEEEEECCCCCCCCEEEEC-CCCCC-CCCCCEEE
Q ss_conf             6304-4333-433335656566400-1345530------00247864599862333666455213-56677-88798999
Q gi|254780741|r  251 ISEN-IKNL-VIVDSSVEAHVPDYL-LYQESAT------IYPNTGPYTAMVCGRSCLAGDIFGEF-HFEKP-VKIGDRIS  319 (367)
Q Consensus       251 ~K~~-~~~~-v~vd~g~~~~~~~~~-~~~~~~~------~~~~~~~~~~~v~G~~C~~~D~l~~~-~~~~~-l~~GD~l~  319 (367)
T Consensus       318 vK~~~~~~~~v~~~g~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~~lP~~~~~GD~l~  396 (423)
T cd06842         318 VKQLGDGNHLIGLEGNSF-SACEFSSEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRRKIPFPRLPKPGDLLV  396 (423)
T ss_pred             EEECCCCCEEEEECCCCC-CCCHHHCHHCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf             976599858999668875-4101211000474574367777788853899998166798158605566756799999999


Q ss_pred             EECCCCHHH-HHCCCCCCCCCCEEEEE
Q ss_conf             968870223-24347689988779999
Q gi|254780741|r  320 FEDVAGYNI-NRKNWFNGINMPTIAVK  345 (367)
Q Consensus       320 i~~~GAY~~-~~~~~Fn~~~~P~~v~~  345 (367)
T Consensus       397 i~~~GAY~~~~~as~fN~~P~P~~V~V  423 (423)
T cd06842         397 FPNTAGYQMDFLESRFHRHPLPRRVVV  423 (423)
T ss_pred             ECCCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf             938630268422123049999988769