HHsearch alignment for GI: 254780741 and conserved domain: cd06842
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=0 Score=526.12 Aligned_cols=331 Identities=18% Similarity=0.205 Sum_probs=253.6
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-
Q ss_conf 88568977999999999999985336--986999541059999999998518748980799998987-36880108853-
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNA--GVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN- 78 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~--~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~- 78 (367)
T Consensus 9 GTP~yVyd~~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~~~~il~~l~~~G~g~Dv~S~gEl~~al~aG~~~~~Iv~~g 88 (423)
T cd06842 9 GSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVRGDRIVATG 88 (423)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECC
T ss_conf 99979976999999999999998755998269998610689999999998499289869999999998599879989738
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCC---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 777803478861388689856720599999986123---4561489963577443101245578643574278888743-
Q gi|254780741|r 79 VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKL---HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE- 154 (367)
Q Consensus 79 ~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~---~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~- 154 (367)
T Consensus 89 ~~Ks~~ei~~Ai~~gv~i~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~----------~~~~~sKFGi~~~~~~~~l~ 158 (423)
T cd06842 89 PAKTDEFLWLAVRHGATIAVDSLDELDRLLALARGYTTGPARVLLRLSPF----------PASLPSRFGMPAAEVRTALE 158 (423)
T ss_pred CCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCC----------CCCCCCCCCCCHHHHHHHHH
T ss_conf 98998999999985998997899999999999876079962799986789----------99999999899999999999
Q ss_pred -------HCCCEEEEECCCCCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CH-----------
Q ss_conf -------149606653056566614--78999999999898650887508753377666445568--07-----------
Q gi|254780741|r 155 -------IKNVNGLMFHNNCENKSF--LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYP--VK----------- 212 (367)
Q Consensus 155 -------~~~i~Gih~H~gs~~~~~--~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~--~~----------- 212 (367)
T Consensus 159 ~~~~~~~~l~~~GlH~HiGs~~~~~~~~a~~~~~~~~-~~~~~~g~~l~~idiGGGfgv~Y~~~~~~~~~~~~~~~~~~~ 237 (423)
T cd06842 159 RLAQLRERVRLVGFHFHLDGYSAAQRVAALQECLPLI-DRARALGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALY 237 (423)
T ss_pred HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9996399983689888648877278999999999999-999952999778971899776776631023443333101110
Q ss_pred -------------------------------HHHHH-----------HHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEE
Q ss_conf -------------------------------89999-----------998754216504530022014574188878878
Q gi|254780741|r 213 -------------------------------DFCQR-----------LKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLD 250 (367)
Q Consensus 213 -------------------------------~~~~~-----------i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~ 250 (367)
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~iEPGR~lva~aG~llt~V~~ 317 (423)
T cd06842 238 GYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRDNGITLALEPGRALLDQCGLTVARVAF 317 (423)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEEEEEEE
T ss_conf 23543211122334566533343456752778999987412222245777642568559976655652255249999999
Q ss_pred EECC-CCCC-CCCCCCCCCCCCCCC-CCCCCCC------CCCCCCCEEEEEECCCCCCCCEEEEC-CCCCC-CCCCCEEE
Q ss_conf 6304-4333-433335656566400-1345530------00247864599862333666455213-56677-88798999
Q gi|254780741|r 251 ISEN-IKNL-VIVDSSVEAHVPDYL-LYQESAT------IYPNTGPYTAMVCGRSCLAGDIFGEF-HFEKP-VKIGDRIS 319 (367)
Q Consensus 251 ~K~~-~~~~-v~vd~g~~~~~~~~~-~~~~~~~------~~~~~~~~~~~v~G~~C~~~D~l~~~-~~~~~-l~~GD~l~ 319 (367)
T Consensus 318 vK~~~~~~~~v~~~g~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~~lP~~~~~GD~l~ 396 (423)
T cd06842 318 VKQLGDGNHLIGLEGNSF-SACEFSSEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRRKIPFPRLPKPGDLLV 396 (423)
T ss_pred EEECCCCCEEEEECCCCC-CCCHHHCHHCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf 976599858999668875-4101211000474574367777788853899998166798158605566756799999999
Q ss_pred EECCCCHHH-HHCCCCCCCCCCEEEEE
Q ss_conf 968870223-24347689988779999
Q gi|254780741|r 320 FEDVAGYNI-NRKNWFNGINMPTIAVK 345 (367)
Q Consensus 320 i~~~GAY~~-~~~~~Fn~~~~P~~v~~ 345 (367)
T Consensus 397 i~~~GAY~~~~~as~fN~~P~P~~V~V 423 (423)
T cd06842 397 FPNTAGYQMDFLESRFHRHPLPRRVVV 423 (423)
T ss_pred ECCCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 938630268422123049999988769