HHsearch results for GI: 254780741 and protein with PDBid: 1vfs_A
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.59 E-value=1.6e-11 Score=94.05 Aligned_cols=292 Identities=13% Similarity=0.091 Sum_probs=167.7
Q ss_pred CCCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCE
Q ss_conf 88568-97799999999999998533698699954105----9999999998518-7489807999989873-6880108
Q gi|254780741|r 3 KTPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETH 75 (367)
Q Consensus 3 ~TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i 75 (367)
+++.| -.|.+.|+.|++.+++.. ++.+++--+||| -...|.+.+.+.| .+|-|+++.|+...++ |.....+
T Consensus 5 ~~r~w~EIdl~ai~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~~Gi~~faVa~i~EA~~LR~~g~~~~il 82 (386)
T 1vfs_A 5 PTRVYAEIDLDAVRANVRALRARA--PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIM 82 (386)
T ss_dssp CSSEEEEEEHHHHHHHHHHHHTTS--TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEE
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
T ss_conf 871799986999999999999768--998399999250463879999999998698999981399999999718999858
Q ss_pred EECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 853777803478861388689856720599999986123456--148996357744310124557864357427888874
Q gi|254780741|r 76 AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--IGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES 153 (367)
Q Consensus 76 ~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~--I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~ 153 (367)
++++. .++++..+.+....+++.|..+++.+.+.++..+.+ |-|.|+ || .+|+|+..+++.+.
T Consensus 83 il~~~-~~~~~~~~~~~~~~~~i~s~~~l~~~~~~a~~~~~~~~vhlkiD------------TG--M~RlG~~~~e~~~~ 147 (386)
T 1vfs_A 83 CWLWT-PGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKAD------------TG--LGRNGCQPADWAEL 147 (386)
T ss_dssp ECCCC-TTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBC------------SS--CCSSSBCHHHHHHH
T ss_pred EEECC-CCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEC------------CC--CCCCCCCHHHHHHH
T ss_conf 99448-70589999860731354759999999999986499824999951------------67--78678583788999
Q ss_pred H----------HCCCEEEEECCCCCC-CCHHHHHHHHHHHH---HHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHH
Q ss_conf 3----------149606653056566-61478999999999---89865088750875337766---6445568078999
Q gi|254780741|r 154 E----------IKNVNGLMFHNNCEN-KSFLCFSAMLKNIE---KEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQ 216 (367)
Q Consensus 154 ~----------~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~---~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~ 216 (367)
. ...+.|+..|..+.. .+.+.....++... +.+.+.+....++.++..-+ .+...++.
T Consensus 148 ~~~~~~~~~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~l~~~~~~~d~----- 222 (386)
T 1vfs_A 148 VGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDL----- 222 (386)
T ss_dssp HHHHHHHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSE-----
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCCC-----
T ss_conf 999998621796427999864455577530678999999999999999717886156515863201784014874-----
Q ss_pred HHHHHHHHCCCEEE---EEHHHHCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99987542165045---30022014574188878878630-------44-3--------334333356565664001345
Q gi|254780741|r 217 RLKEFSEKYSVQIY---LEPGEAIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYLLYQE 277 (367)
Q Consensus 217 ~i~~~~~~~~~~l~---iEPGR~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~~~~~ 277 (367)
++-=..-|+..-. ..|-..=..++..+.++|+.++. ++ . .++++..|..+-++-.+.. .
T Consensus 223 -vR~Gi~lYG~~p~~~~~~~~~~~lkpv~~l~a~ii~v~~l~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~-~ 300 (386)
T 1vfs_A 223 -VRTGLAVYGVSPSPELGTPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASG-R 300 (386)
T ss_dssp -EEECGGGGTCCSCGGGCCTTTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGGGTT-T
T ss_pred -CCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCHHCCCCCCCCC-C
T ss_conf -25531546677674447643457325579988988999878999657777454047856888703142076634579-7
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECC
Q ss_conf 5300024786459986233366645521356677887989999688
Q gi|254780741|r 278 SATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDV 323 (367)
Q Consensus 278 ~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~ 323 (367)
-++. -....+.|.|..|+ |.+.-+...++.++||.+.+..-
T Consensus 301 ~~vl---i~g~~~pivG~vsM--D~~~vDvtd~~~~~GD~V~l~G~ 341 (386)
T 1vfs_A 301 GPVL---VAGKIRRAAGRIAM--DQFVVDLGEDLAEAGDEAVILGD 341 (386)
T ss_dssp CEEE---ETTEEEEBCSCCCS--SCEEEEEETCCCCTTCEEEEECC
T ss_pred EEEE---ECCEEEEEEEEECC--CEEEEECCCCCCCCCCEEEEEEC
T ss_conf 0699---99999289649623--43899878987898999999978