HHsearch results for GI: 254780741 and protein with PDBid: 2o0t_A

>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A
Probab=100.00  E-value=0  Score=553.38  Aligned_cols=361  Identities=15%  Similarity=0.211  Sum_probs=302.3

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|+++|+.++. ++++++||+||||++.|++++.+.|+|+||+|++|+++|++ |+++++|+|+ |.
T Consensus        41 GTP~yV~d~~~i~~n~~~l~~af~-~~~~i~yAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~Ii~~gp~  119 (467)
T 2o0t_A           41 GTPLFVIDEDDFRSRCRETAAAFG-SGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNN  119 (467)
T ss_dssp             CSSEEEEEHHHHHHHHHHHHHHTS-SGGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCTT
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             999899889999999999998568-9987999874288799999999819979998999999999759893329991898


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-------
Q ss_conf             7803478861388-68985672059999998612345--6148996357744310124557864357427888-------
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK-------  150 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~-------  150 (367)
                      |++++++.++..+ ..+++||++|++++.+++++.+.  +|++|+||++....+....++...||||+...+.       
T Consensus       120 k~~~~l~~a~~~gv~~i~iDs~~El~~l~~~~~~~~~~~~v~lrl~~~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~  199 (467)
T 2o0t_A          120 KSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVR  199 (467)
T ss_dssp             CCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999998775043258846789999999987763987413453204766555422346645565576501567899999


Q ss_pred             --HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH--------HHCCCCCEEEEECCCCCCCCC----CCCCHHHHH
Q ss_conf             --874314960665305656661478999999999898--------650887508753377666445----568078999
Q gi|254780741|r  151 --IESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF--------GHFITQIEWISLGGGIHFTDK----DYPVKDFCQ  216 (367)
Q Consensus       151 --~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~--------~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~  216 (367)
                        .+....++.|+|||+|||+.+.+.|.+.+..+.+++        .+.+..+++||+||||++++.    ..+++.+++
T Consensus       200 ~~~~~~~~~l~Glh~H~gs~~~d~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ld~GGG~~~~~~~~~~~~~~~~~~~  279 (467)
T 2o0t_A          200 RVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAA  279 (467)
T ss_dssp             HHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCCCCCHHHHHH
T ss_pred             HHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf             99735698577898863888787088999999999988889986567507563210331786746777788887789999


Q ss_pred             HHHHHHH----HC---CCEEEEEHHHHCCCCCEEEEEEEEEEEC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9998754----21---6504530022014574188878878630------443334333356565664001345530002
Q gi|254780741|r  217 RLKEFSE----KY---SVQIYLEPGEAIVTNTTTLNTTVLDISE------NIKNLVIVDSSVEAHVPDYLLYQESATIYP  283 (367)
Q Consensus       217 ~i~~~~~----~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~------~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~  283 (367)
                      .+....+    ..   ++++++||||++|++||.++++|..+|.      ++++|+++|+|++++++++++..+++....
T Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~EPGR~lv~~ag~llt~V~~~~~~~~~~~~~~~~~~vdag~~~~~~~~~~~~~~~~~~~  359 (467)
T 2o0t_A          280 KLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDVRLV  359 (467)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCEEEEEEESCCTTTCCHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCEEEEECCEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEC
T ss_conf             99999998753205767508986630786544799999999974202323765899988765456685671875634852


Q ss_pred             ----CCCCEEEEEECCCCCCCCEEEECCCCC-CCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-EC
Q ss_conf             ----478645998623336664552135667-788798999968870223243476899887799996799099997-38
Q gi|254780741|r  284 ----NTGPYTAMVCGRSCLAGDIFGEFHFEK-PVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EF  357 (367)
Q Consensus       284 ----~~~~~~~~v~G~~C~~~D~l~~~~~~~-~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e  357 (367)
                          +....++.|+||||+++|+|+.+..+| ++++||+|+|.|||||+++|+++||++|+|++|+++ +|+.++|| ||
T Consensus       360 ~~~~~~~~~~~~v~G~tC~~~D~l~~~~~lP~~l~~GD~l~f~~~GAY~~~~s~~fN~~~~P~~v~v~-~g~~~lir~re  438 (467)
T 2o0t_A          360 SRVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH-AGNARLVLRRE  438 (467)
T ss_dssp             SSCCCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCCCCEEEEEE-TTEEEEEECCC
T ss_pred             CCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCC
T ss_conf             57788982699999658799879925656888899999999859213247774836589998389999-99699998889


Q ss_pred             CHHHHHHH
Q ss_conf             98999874
Q gi|254780741|r  358 SYNDYYNN  365 (367)
Q Consensus       358 ~~~d~~~~  365 (367)
                      |+||++++
T Consensus       439 t~ed~~~~  446 (467)
T 2o0t_A          439 TVDDLLSL  446 (467)
T ss_dssp             CHHHHHTT
T ss_pred             CHHHHHHH
T ss_conf             99999853