HHsearch results for GI: 254780741 and protein with PDBid: 2vd8_A

>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.37  E-value=1.6e-08  Score=74.32  Aligned_cols=316  Identities=12%  Similarity=0.115  Sum_probs=171.6

Q ss_pred             EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCC
Q ss_conf             8977999999999999985336986999541059----999999998518-748980799998987-3688010885377
Q gi|254780741|r    7 YLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVA   80 (367)
Q Consensus         7 yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~   80 (367)
                      -=.|.+.|++|++.+++... ++++++--+|||.    ...|.+.+.+.| ++|-|+++.|....+ .|......+++| 
T Consensus        14 ~EIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~gi~~~Ilvl~~-   91 (391)
T 2vd8_A           14 VEVDLDAIYNNVTHIXEFIP-SDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPILVLGP-   91 (391)
T ss_dssp             EEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEEECSC-
T ss_pred             EEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEEC-
T ss_conf             99859999999999997479-9987999991502647889999999986989999916999999997199997799748-


Q ss_pred             CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HHHHH------
Q ss_conf             78034788613886898567205999999861234561489963577443101245578643574278-88874------
Q gi|254780741|r   81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DKIES------  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~~~~------  153 (367)
                      ..++++..+.++....++.|.+++..+.+.++ .+.++-+-|+          ++||  .+|+|+... ++.+.      
T Consensus        92 ~~~~~~~~~~~~~~~~~i~s~~~l~~~~~~~~-~~~~~~vhlk----------iDTG--M~RlG~~~~~e~~~~~~~i~~  158 (391)
T 2vd8_A           92 SPPRDINVAAENDVALTVFQXEWVDEAIXLWD-GSSTMXYHIN----------FDSG--MGRIGIRERXELXGFLXSLEG  158 (391)
T ss_dssp             CCGGGHHHHHHTTEEEECCCHHHHHHHHHHCC-SSCCEEEEEE----------BCSS--CCSSSBCCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCCEEEEEE----------ECCC--CCCCCCCCHHHHHHHHHHHHH
T ss_conf             88256556542053203405999999999860-4686489999----------6379--886788741468999999972


Q ss_pred             -HHCCCEEEEECCCCC-CCCHHHHHHHHHHHHHH---HHHCCCCCEEEEECC---CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             -314960665305656-66147899999999989---865088750875337---7666445568078999999875421
Q gi|254780741|r  154 -EIKNVNGLMFHNNCE-NKSFLCFSAMLKNIEKE---FGHFITQIEWISLGG---GIHFTDKDYPVKDFCQRLKEFSEKY  225 (367)
Q Consensus       154 -~~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~---~~~~~~~l~~idiGG---G~~~~~~~~~~~~~~~~i~~~~~~~  225 (367)
                       ...++.|+-.|..+- ..+.+...+.++...+.   +.+.+.+...+.+..   -+..+...++.      ++-=..-|
T Consensus       159 ~~~l~i~Gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~~~~~d~------VR~Gi~lY  232 (391)
T 2vd8_A          159 APFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNA------VRIGIAMY  232 (391)
T ss_dssp             CTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTE------EEESTTTT
T ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCC------EECCCCEE
T ss_conf             899650367612276776540567899999999999998628983205522767664675235773------40682014


Q ss_pred             CCEEEE--EHHHH-CCCCCEEEEEEEEEEEC-------C-CCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             650453--00220-14574188878878630-------4-433--------34333356565664001345530002478
Q gi|254780741|r  226 SVQIYL--EPGEA-IVTNTTTLNTTVLDISE-------N-IKN--------LVIVDSSVEAHVPDYLLYQESATIYPNTG  286 (367)
Q Consensus       226 ~~~l~i--EPGR~-lv~~ag~lv~~V~~~K~-------~-~~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~  286 (367)
                      +..-..  .+..- =.-+++.+.++|+.+|+       + +..        .+++..|-.+-++-.+..  ..+..   .
T Consensus       233 G~~p~~~~~~~~~~~Lkpv~~l~s~v~~i~~~~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~~r~~~~--~~v~i---~  307 (391)
T 2vd8_A          233 GLSPSVEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQG--FEVLV---N  307 (391)
T ss_dssp             TCCSCTTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT--CEEEE---T
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCEEECCCCEEEEEECEEECCCCCCCCCC--CEEEE---C
T ss_conf             777763324455534322166541001069846999778676275136648988441806862304679--88999---9


Q ss_pred             CEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC------CH---------HHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf             64599862333666455213566778879899996887------02---------2324347689988779999679909
Q gi|254780741|r  287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA------GY---------NINRKNWFNGINMPTIAVKNVDGTI  351 (367)
Q Consensus       287 ~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G------AY---------~~~~~~~Fn~~~~P~~v~~~~~g~~  351 (367)
                      ...+-|+|..|+  |.+.-+.. .+.++||.+++....      +-         .+.+-+.. +...|.+|+.  +|.+
T Consensus       308 G~~~pivGri~M--D~~~VDv~-~~v~~GD~v~l~G~~~~~~i~~~~~a~~~gti~yEil~~l-~~Rv~R~yv~--~g~~  381 (391)
T 2vd8_A          308 GXRVPIVGRVTM--DQFMIHLP-CEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTI-SFRVPRIFIR--NGXV  381 (391)
T ss_dssp             TEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHHTS-CTTSCEEEEE--TTEE
T ss_pred             CEECCEEEEECC--CEEEEECC-CCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC-CCCCCEEEEE--CCEE
T ss_conf             988747457546--43799899-9999999899977999878899999998789613686087-8888759997--9979


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780741|r  352 KAI  354 (367)
Q Consensus       352 ~~~  354 (367)
                      .-+
T Consensus       382 ~~~  384 (391)
T 2vd8_A          382 VEV  384 (391)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999