HHsearch results for GI: 254780741 and protein with PDBid: 2vd8_A
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.37 E-value=1.6e-08 Score=74.32 Aligned_cols=316 Identities=12% Similarity=0.115 Sum_probs=171.6
Q ss_pred EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCC
Q ss_conf 8977999999999999985336986999541059----999999998518-748980799998987-3688010885377
Q gi|254780741|r 7 YLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVA 80 (367)
Q Consensus 7 yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~ 80 (367)
-=.|.+.|++|++.+++... ++++++--+|||. ...|.+.+.+.| ++|-|+++.|....+ .|......+++|
T Consensus 14 ~EIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~gi~~~Ilvl~~- 91 (391)
T 2vd8_A 14 VEVDLDAIYNNVTHIXEFIP-SDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPILVLGP- 91 (391)
T ss_dssp EEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEEECSC-
T ss_pred EEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEEC-
T ss_conf 99859999999999997479-9987999991502647889999999986989999916999999997199997799748-
Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HHHHH------
Q ss_conf 78034788613886898567205999999861234561489963577443101245578643574278-88874------
Q gi|254780741|r 81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DKIES------ 153 (367)
Q Consensus 81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~~~~------ 153 (367)
..++++..+.++....++.|.+++..+.+.++ .+.++-+-|+ ++|| .+|+|+... ++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~i~s~~~l~~~~~~~~-~~~~~~vhlk----------iDTG--M~RlG~~~~~e~~~~~~~i~~ 158 (391)
T 2vd8_A 92 SPPRDINVAAENDVALTVFQXEWVDEAIXLWD-GSSTMXYHIN----------FDSG--MGRIGIRERXELXGFLXSLEG 158 (391)
T ss_dssp CCGGGHHHHHHTTEEEECCCHHHHHHHHHHCC-SSCCEEEEEE----------BCSS--CCSSSBCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCCEEEEEE----------ECCC--CCCCCCCCHHHHHHHHHHHHH
T ss_conf 88256556542053203405999999999860-4686489999----------6379--886788741468999999972
Q ss_pred -HHCCCEEEEECCCCC-CCCHHHHHHHHHHHHHH---HHHCCCCCEEEEECC---CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -314960665305656-66147899999999989---865088750875337---7666445568078999999875421
Q gi|254780741|r 154 -EIKNVNGLMFHNNCE-NKSFLCFSAMLKNIEKE---FGHFITQIEWISLGG---GIHFTDKDYPVKDFCQRLKEFSEKY 225 (367)
Q Consensus 154 -~~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~---~~~~~~~l~~idiGG---G~~~~~~~~~~~~~~~~i~~~~~~~ 225 (367)
...++.|+-.|..+- ..+.+...+.++...+. +.+.+.+...+.+.. -+..+...++. ++-=..-|
T Consensus 159 ~~~l~i~Gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~~~~~d~------VR~Gi~lY 232 (391)
T 2vd8_A 159 APFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNA------VRIGIAMY 232 (391)
T ss_dssp CTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTE------EEESTTTT
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCC------EECCCCEE
T ss_conf 899650367612276776540567899999999999998628983205522767664675235773------40682014
Q ss_pred CCEEEE--EHHHH-CCCCCEEEEEEEEEEEC-------C-CCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 650453--00220-14574188878878630-------4-433--------34333356565664001345530002478
Q gi|254780741|r 226 SVQIYL--EPGEA-IVTNTTTLNTTVLDISE-------N-IKN--------LVIVDSSVEAHVPDYLLYQESATIYPNTG 286 (367)
Q Consensus 226 ~~~l~i--EPGR~-lv~~ag~lv~~V~~~K~-------~-~~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~ 286 (367)
+..-.. .+..- =.-+++.+.++|+.+|+ + +.. .+++..|-.+-++-.+.. ..+.. .
T Consensus 233 G~~p~~~~~~~~~~~Lkpv~~l~s~v~~i~~~~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~~r~~~~--~~v~i---~ 307 (391)
T 2vd8_A 233 GLSPSVEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQG--FEVLV---N 307 (391)
T ss_dssp TCCSCTTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT--CEEEE---T
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCEEECCCCEEEEEECEEECCCCCCCCCC--CEEEE---C
T ss_conf 777763324455534322166541001069846999778676275136648988441806862304679--88999---9
Q ss_pred CEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC------CH---------HHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf 64599862333666455213566778879899996887------02---------2324347689988779999679909
Q gi|254780741|r 287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA------GY---------NINRKNWFNGINMPTIAVKNVDGTI 351 (367)
Q Consensus 287 ~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G------AY---------~~~~~~~Fn~~~~P~~v~~~~~g~~ 351 (367)
...+-|+|..|+ |.+.-+.. .+.++||.+++.... +- .+.+-+.. +...|.+|+. +|.+
T Consensus 308 G~~~pivGri~M--D~~~VDv~-~~v~~GD~v~l~G~~~~~~i~~~~~a~~~gti~yEil~~l-~~Rv~R~yv~--~g~~ 381 (391)
T 2vd8_A 308 GXRVPIVGRVTM--DQFMIHLP-CEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTI-SFRVPRIFIR--NGXV 381 (391)
T ss_dssp TEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHHTS-CTTSCEEEEE--TTEE
T ss_pred CEECCEEEEECC--CEEEEECC-CCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC-CCCCCEEEEE--CCEE
T ss_conf 988747457546--43799899-9999999899977999878899999998789613686087-8888759997--9979
Q ss_pred EEE
Q ss_conf 999
Q gi|254780741|r 352 KAI 354 (367)
Q Consensus 352 ~~~ 354 (367)
.-+
T Consensus 382 ~~~ 384 (391)
T 2vd8_A 382 VEV 384 (391)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999