HHsearch results for GI: 254780741 and protein with PDBid: 2yxx_A
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8}
Probab=100.00 E-value=0 Score=559.16 Aligned_cols=361 Identities=17% Similarity=0.179 Sum_probs=305.5
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEECC-C
Q ss_conf 88568977999999999999985336986999541059999999998518748980799998987-368801088537-7
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYNV-A 80 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~~-~ 80 (367)
+|||||||++.|++|+++++++++..+++++||+||||++.|+++|.+.|+|+||+|.+|+++|+ .|+++++|+|++ .
T Consensus 12 GTP~yv~d~~~l~~~~~~l~~~~~~~~~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~ii~~~~~ 91 (386)
T 2yxx_A 12 GTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGNG 91 (386)
T ss_dssp CSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSC
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 99889998999999999999745778968999960078599999999839967995999999999818997548862898
Q ss_pred CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH----HHH
Q ss_conf 78034788613886-8985672059999998612345614899635774431012455786435742788887----431
Q gi|254780741|r 81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE----SEI 155 (367)
Q Consensus 81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~----~~~ 155 (367)
|++++++.|.+.+. .+++|+.+|++++... ...+.++++|+||++.........++.+.++||+..++... ...
T Consensus 92 k~~~~l~~a~~~gv~~~~~d~~~~~~~~~~~-~~~~~~i~lri~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (386)
T 2yxx_A 92 KSRDQMEHFLREDVRIVNVDSFEEMEIWREL-NPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRS 170 (386)
T ss_dssp CCHHHHHHHHHTTCCEEEECCHHHHHHHHHH-CCTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGGHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999998639751024328999999875-033410565436885666776221377667665035555689987431
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEHH
Q ss_conf 4960665305656661478999999999898650887508753377666445568078999999875-421650453002
Q gi|254780741|r 156 KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFS-EKYSVQIYLEPG 234 (367)
Q Consensus 156 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~iEPG 234 (367)
.++.|+|||+|||+.+...|.+++..+.+..... .+++|||||||++++.+...+.......... ....+++++|||
T Consensus 171 ~~l~GlhfHvgS~~~~~~~~~~a~~~~~~~~~~~--~~~~idiGGGf~~~~~~~~~~~~~~~~~~~~~~~~~~~li~EPG 248 (386)
T 2yxx_A 171 MNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY--GFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRFKRVIVEIG 248 (386)
T ss_dssp SCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH--TCSEEECCCCBCCCSSSCCCCHHHHHHHTGGGGTTCSEEEEEEC
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 7804898744865445540667999999986305--98566346745777776432167899999876255874998771
Q ss_pred HHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCEEEEEECCCCCCCCEEEECCCCCC
Q ss_conf 20145741888788786304-4333433335656566400134553000--24786459986233366645521356677
Q gi|254780741|r 235 EAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY--PNTGPYTAMVCGRSCLAGDIFGEFHFEKP 311 (367)
Q Consensus 235 R~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~G~~C~~~D~l~~~~~~~~ 311 (367)
||||++||+++|+|+++|++ +++|+++|+|++++++|.++..+++... .+....+++|+||||+++|+|+++..+|+
T Consensus 249 R~lva~~g~lvt~V~~~k~~~~~~~~i~D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~tC~~~D~l~~~~~lP~ 328 (386)
T 2yxx_A 249 RYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVIAYDRELPE 328 (386)
T ss_dssp HHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCEEETTCCCCSEEEEEECSSSSTTCEEEEEEEESC
T ss_pred HHHHHCCEEEEEEEEEEEECCCCEEEEECCCHHHCCCCHHHCCCCEEEECCCCCCCCEEEEECCCCCCCCEECCCCCCCC
T ss_conf 20311853899999997314982799999821203573541354205741456775627998867898888834551798
Q ss_pred CCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf 88798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r 312 VKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL 366 (367)
Q Consensus 312 l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~ 366 (367)
+++||+|+|.|+|||+++|+++||++|+|++++++++|+++++| |||+||++++.
T Consensus 329 l~~GD~l~f~~~GAY~~~~~~~Fn~~~~P~~v~v~~~g~~~~ir~~et~ed~~~~~ 384 (386)
T 2yxx_A 329 VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDV 384 (386)
T ss_dssp CCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEECTTSCEEEEECCCCHHHHTTTC
T ss_pred CCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHCC
T ss_conf 99999999949861047553665689988499997698499997689999997404