HHsearch results for GI: 254780741 and protein with PDBid: 3co8_A
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1}
Probab=99.39 E-value=1.4e-09 Score=81.33 Aligned_cols=289 Identities=13% Similarity=0.077 Sum_probs=160.8
Q ss_pred CCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEE
Q ss_conf 8568-97799999999999998533698699954105----9999999998518-748980799998987-368801088
Q gi|254780741|r 4 TPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHA 76 (367)
Q Consensus 4 TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~ 76 (367)
-|.+ -.|.+.|+.|++.+++... +.+++-.+||| -...|.+.+.+.| ++|-|+++.|....+ .|.....++
T Consensus 8 r~t~leIdl~al~~N~~~ir~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~Ilv 85 (380)
T 3co8_A 8 RSTRIEFSKSSLAYNVQYTKQVSG--AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFILI 85 (380)
T ss_dssp SSCEEEECHHHHHHHHHHHHHHHC--CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEE
T ss_conf 987999839999999999985579--984999997434647899999999986979999919999999997399983899
Q ss_pred ECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HH---HH
Q ss_conf 537778034788613886898567205999999861234561489963577443101245578643574278-88---87
Q gi|254780741|r 77 YNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DK---IE 152 (367)
Q Consensus 77 ~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~---~~ 152 (367)
++|. .++|+..+.+.....++.|.++++.+.+.+++.+.+|-|-| +|| .+|+|+..+ ++ .+
T Consensus 86 l~~~-~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~VhLki------------DTG--M~RlG~~~~~~~~~~~~ 150 (380)
T 3co8_A 86 LGPI-DVKYAPIASKYHFLTTVSSLDWLKSADKILGKEKLSVNLAV------------DTG--MNRIGVRSKKDLKDEIE 150 (380)
T ss_dssp CSCC-CGGGHHHHHHTTCEEEECCHHHHHHHHHHCTTCCEEEEEEB------------CSS--SCSSSBCSHHHHHHHHH
T ss_pred EECC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE------------ECC--CCCCCCCCHHHHHHHHH
T ss_conf 7254-21233688872531000249999999997346884389998------------268--98677773467899999
Q ss_pred HH-----HCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 43-----1496066530565666-1478999999999898650887-508753377666445568078999999875421
Q gi|254780741|r 153 SE-----IKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFITQ-IEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY 225 (367)
Q Consensus 153 ~~-----~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~-l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~ 225 (367)
.. ...+.|+-.|..+-.. +.......++...+..+.+... +..+--.++.-.....++ ...+.+ +-
T Consensus 151 ~l~~~~~~l~~~Gi~SHfa~ad~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~d~v-----R~ 223 (380)
T 3co8_A 151 FLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIMPRYVHVMNSGAAMYHSKELP--GCNSIA-----RV 223 (380)
T ss_dssp HHHHCTTTEEEEEEECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGGGCT--TSCSEE-----EE
T ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCCHHCC--CCCCCC-----CC
T ss_conf 97641135440026620236677764788999999999997435753145533165635811156--432234-----67
Q ss_pred CCEEE-EEHHH------HCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65045-30022------014574188878878630-------44-3--------33433335656566400134553000
Q gi|254780741|r 226 SVQIY-LEPGE------AIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYLLYQESATIY 282 (367)
Q Consensus 226 ~~~l~-iEPGR------~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~~~~~~~~~~ 282 (367)
++-++ ..|.. .-.-++..+.++|+.+|+ ++ . +.+++..|..+-++..+.. -.+..
T Consensus 224 Gi~lYG~~p~~~~~~~~~~lkpv~~l~a~i~~ik~v~~G~~VgYg~~~~~~~~~~iavv~iGYaDG~~r~~~~--~~v~i 301 (380)
T 3co8_A 224 GTVVYGVEPSEGVLGPIDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQD--FQLLI 301 (380)
T ss_dssp STTTTTCCTTTTSSSCGGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT--CEEEE
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCC--CEEEE
T ss_conf 7222456787444451003773189975211314648998666666310378728999801613551520479--87999
Q ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC
Q ss_conf 247864599862333666455213566778879899996887
Q gi|254780741|r 283 PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA 324 (367)
Q Consensus 283 ~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G 324 (367)
....+.|+|..|+ |.+.-+.. .+.++||.+++..-.
T Consensus 302 ---~G~~~pivGrisM--D~~~vdv~-~~~~vGD~V~l~G~~ 337 (380)
T 3co8_A 302 ---DGQKCRQVGQIAM--DQMMVALP-HEYPIGTEVTLIGKS 337 (380)
T ss_dssp ---TTEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEE
T ss_pred ---CCEEEEECCEECC--CEEEEECC-CCCCCCCEEEEEECC
T ss_conf ---9999027157334--60699899-999999999998489