HHsearch results for GI: 254780741 and protein with PDBid: 3kw3_A
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.41 E-value=1.6e-09 Score=80.82 Aligned_cols=291 Identities=15% Similarity=0.088 Sum_probs=162.0
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECC
Q ss_conf 68977999999999999985336986999541059----999999998518-7489807999989873-68801088537
Q gi|254780741|r 6 YYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNV 79 (367)
Q Consensus 6 ~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~ 79 (367)
.-..|.+.|++|++.+++... +.+++--+|||. ...|.+.+.+.| +++-|+++.|....++ +.....++..+
T Consensus 22 ~a~Idl~ai~~N~~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~il~l~~ 99 (376)
T 3kw3_A 22 IATIDVRAIVANYRTLAQHVA--PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIALLN 99 (376)
T ss_dssp EEEECHHHHHHHHHHHHHHHT--TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEEEETT
T ss_pred EEEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHC
T ss_conf 999829999999999997579--982999997741416599999999986969999938899999997288542556306
Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----
Q ss_conf 778034788613886898567205999999861234561489963577443101245578643574278888743-----
Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE----- 154 (367)
Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~----- 154 (367)
....++.+.+.++....++.|+++++.+.+.++..+.++-+-+. ++|| .+|+|+..+++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~v~s~~~l~~l~~~a~~~~~~~~vhlk----------vDTG--M~RlG~~~~e~~~~i~~i~~ 167 (376)
T 3kw3_A 100 GFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQ----------VDTN--MSRLGLDKKELQKLIKNPTI 167 (376)
T ss_dssp CCCTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEE----------BCSS--CCSSSBCHHHHHHHHHCCTH
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE----------EECC--CCCCCCCHHHHHHHHHHHHH
T ss_conf 79778999987412344006599999999889863887149999----------8489--98478886899999887664
Q ss_pred --HCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf --1496066530565666-147899999999989865088-750875337766644556807899999987542165045
Q gi|254780741|r 155 --IKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFIT-QIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIY 230 (367)
Q Consensus 155 --~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~-~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 230 (367)
..++.|+..|..+-.. +.....+......+...+... .....|=+|=+..+...++. ++-=..-|+..-
T Consensus 168 ~~~l~i~Gi~THfa~ad~~~~~~~~~q~~~~~~~~~~~~~~~~h~~NSag~~~~~~~~~d~------vR~Gi~lYG~~p- 240 (376)
T 3kw3_A 168 FEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIFLGSDFYFDL------VRPGIALYGVDP- 240 (376)
T ss_dssp HHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSCCCCEECCCHHHHTTCGGGTTTE------ECCSGGGGTCCT-
T ss_pred CCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHCCCC------EECCEEEECCCC-
T ss_conf 0474377898776135567828899999999999751775465554769986392321464------203402525776-
Q ss_pred EEHHHHCCCCCEEEEEEEEEEECC--C------CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 300220145741888788786304--4------33--------3433335656566400134553000247864599862
Q gi|254780741|r 231 LEPGEAIVTNTTTLNTTVLDISEN--I------KN--------LVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCG 294 (367)
Q Consensus 231 iEPGR~lv~~ag~lv~~V~~~K~~--~------~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 294 (367)
......-.-++..+-++|+.+|.- + .. .+++..|-.+-++-.+. ..-.+. -....+.|.|
T Consensus 241 ~~~~~~~l~pv~~l~s~i~~vk~v~~G~~VgYg~~~~a~~~~~ia~v~vGYaDG~~R~~~-~~~~V~---i~g~~~~ivG 316 (376)
T 3kw3_A 241 HGKHPTPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILS-NKGTVY---FNGHKLPIVG 316 (376)
T ss_dssp TCCSSCSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCCGGGT-TTCEEE---ETTEEEEBCS
T ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCC-CCCEEE---ECCEEEEEEE
T ss_conf 434222356550699998654454489866668723337874998504534677552347-885799---9999827962
Q ss_pred CCCCCCCEEEECCC--CCCCCCCCEEEEECC
Q ss_conf 33366645521356--677887989999688
Q gi|254780741|r 295 RSCLAGDIFGEFHF--EKPVKIGDRISFEDV 323 (367)
Q Consensus 295 ~~C~~~D~l~~~~~--~~~l~~GD~l~i~~~ 323 (367)
..|+ |.+.-+.. +.+.++||.+.+..-
T Consensus 317 risM--D~~~vDvt~~~~~~~vGD~V~l~G~ 345 (376)
T 3kw3_A 317 HISM--DSIIVDATDLDKKPQRGDWVELIGP 345 (376)
T ss_dssp CCCS--SCEEEECTTCSSCCCTTCEEEEEBT
T ss_pred EECC--CEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf 8635--3489987788777999999999819