PSIBLAST alignment of GI: 254780741 and protein with PDB id: 1knw
>gi|39654106|pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase Length = 425
>gi|39654107|pdb|1KO0|A Chain A, Crystal Structure Of A D,L-Lysine Complex Of Diaminopimelate Decarboxylase Length = 425
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 57/393 (14%), Positives = 116/393 (29%), Gaps = 46/393 (11%)
Query: 5 PYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM 64
P ++ D Q + + + A K + + + + S SL E+
Sbjct: 27 PVWVYDAQIIRRQIAALKQFDV-----VRFAQKACSNIHILRLMREQGVKVDSVSLGEIE 81
Query: 65 LGHEKF-----GGETHAYNVAYKDCEIDAVLSNCDT-IIFNTVSQLNKFKDKAQKLHKKI 118
+ + D +S + +V L++ + ++
Sbjct: 82 RALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVS--PGHRV 139
Query: 119 GLRINPSVSYSKFILADPNRPFSRLGEK------CKDKIESEIKNVNGLMFHNNCENKSF 172
LR+NP + + S+ G D I+ + G+ H
Sbjct: 140 WLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYA 199
Query: 173 LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTD---------KDYPVKDFCQRLKEFSE 223
+ + F ++ IS GGG+ + Y R +
Sbjct: 200 HLEQVCGAMVRQVI-EFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARH 258
Query: 224 -KYSVQIYLEPGEAIVTNTTTLNTTVLDI-SENIKNLVIVDSSVEAHVPDYLLYQESA-- 279
+ V++ +EPG +V + L T V + ++ V+VD+ + +
Sbjct: 259 LGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHIS 318
Query: 280 ------TIYPNTGPYTAMVCGRSCLAGDIF-------GEFHFEKPVKIGDRISFEDVAGY 326
+ +V G C +GD+F E VK GD + D Y
Sbjct: 319 ALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAY 378
Query: 327 NINRKNWFNGINMPTIAVKNVDGTIKAIREFSY 359
+ + +N + + + R +
Sbjct: 379 GASMSSNYNSRPLLPEVLFDNGQARLIRRRQTI 411