RPSBLAST alignment of GI: 254780741 and protein with PDBid: 2yxx
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8} Length = 386
Score = 138 bits (347), Expect = 3e-33
Identities = 60/375 (16%), Positives = 121/375 (32%), Gaps = 15/375 (4%)
Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63
TP Y+ ++ L + + + A+K + L + G + E+
Sbjct: 13 TPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGEL 72
Query: 64 MLGHEKFGGETHAYNVAY---KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGL 120
+ +D + + + ++ ++ +++ + + +
Sbjct: 73 LAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPE-GVEYFI 131
Query: 121 RINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIK----NVNGLMFHNNCENKSFLCFS 176
R+NP V + G +D + N+ GL H + F
Sbjct: 132 RVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRSMNIRGLHVHIGSQITRVEPFV 191
Query: 177 AMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSV-QIYLEPGE 235
+ + + E I++GGG + R K + ++ +E G
Sbjct: 192 EAFSKVVRASERY--GFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRFKRVIVEIGR 249
Query: 236 AIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPD--YLLYQESATIYPNTGPYTAMV 292
IV + L V+ + K V+VD + + Y Y + A V
Sbjct: 250 YIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADV 309
Query: 293 CGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIK 352
G C +GD+ V+ GD I+ E+ Y N +N P + +G I
Sbjct: 310 VGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRIS 369
Query: 353 AIRE-FSYNDYYNNL 366
IR + D + ++
Sbjct: 370 LIRRRETEMDIFKDV 384