HHsearch alignment for GI: 254780742 and conserved domain: COG2344
>COG2344 AT-rich DNA-binding protein [General function prediction only].
Probab=96.63 E-value=0.012 Score=36.53 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=64.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 31999849877999999999608987259996399999999998734302455555730899437898999999975397
Q gi|254780742|r 3 KNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTNS 82 (419)
Q Consensus 3 k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~~ 82 (419)
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~-----------------~~~~v~V~~~d~le~~v~~~dv 147 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT-----------------KIGDVPVYDLDDLEKFVKKNDV 147 (211)
T ss_pred EEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCC-----------------CCCCEEEECHHHHHHHHHHCCC
T ss_conf 34899905708889860742332693599996178788375-----------------2488145526888889886176
Q ss_pred CEEEECCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 299973761003278999986288689
Q gi|254780742|r 83 QIIINVGSSFLNMSVLRACIDSNVAYI 109 (419)
Q Consensus 83 dvVin~~~p~~~~~v~~a~i~~g~hyv 109 (419)
T Consensus 148 ~iaiLtVPa~~AQ~vad~Lv~aGVkGI 174 (211)
T COG2344 148 EIAILTVPAEHAQEVADRLVKAGVKGI 174 (211)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 189997348989999999998387358