HHsearch alignment for GI: 254780742 and conserved domain: PRK01390

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.40  E-value=0.016  Score=35.71  Aligned_cols=85  Identities=14%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf             73199984987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r    2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN   81 (419)
Q Consensus         2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~   81 (419)
T Consensus         9 gk~v~v~GlG~sG~s~a~~L~~~G---~~V~~~D~~~~~~~~~~~~-----------g~~~~--~~~~~~-----~~--~   65 (457)
T PRK01390          9 GKTVALFGLGGSGLATARALKAGG---AEVIAWDDNPDSVAKAAAA-----------GIATA--DLRTAD-----WS--Q   65 (457)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCC---CEEEEEECCCHHHHHHHHC-----------CCCCC--CCCCCC-----CC--C
T ss_conf             998999943699999999999789---9799993992066899875-----------98314--554123-----20--3


Q ss_pred             CC-EEEECCCCCCCHH---HHHHHHHCCCCEE
Q ss_conf             72-9997376100327---8999986288689
Q gi|254780742|r   82 SQ-IIINVGSSFLNMS---VLRACIDSNVAYI  109 (419)
Q Consensus        82 ~d-vVin~~~p~~~~~---v~~a~i~~g~hyv  109 (419)
T Consensus        66 ~~~iV~SPGIp~~~p~~~~~v~~a~~~gi~v~   97 (457)
T PRK01390         66 FAALVLSPGVPLTHPKPHWTVDLARAAGVEVI   97 (457)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHCCCEEE
T ss_conf             87899999888656673199999998599186