HHsearch alignment for GI: 254780742 and conserved domain: PRK03369

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=97.26  E-value=0.0039  Score=39.91  Aligned_cols=87  Identities=14%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf             73199984987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r    2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN   81 (419)
Q Consensus         2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~   81 (419)
T Consensus        12 Gk~V~V~GlG~sG~a~a~~L~~~G---~~v~~~D~~~~~~~~~~~~-----------~~~~~~--~~~~~---~~~~--~   70 (487)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFG---ARPTVCDDDPDALRPHAER-----------GVATVS--SSDAV---QQIA--D   70 (487)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCC---CEEEEEECCCHHHHHHHHC-----------CCCEEC--CCCCH---HHHC--C
T ss_conf             898999915683899999999786---9799998982577999865-----------994863--76226---5646--7


Q ss_pred             CCEEEECCCCCCCHHHHHHHHHCCCCEE
Q ss_conf             7299973761003278999986288689
Q gi|254780742|r   82 SQIIINVGSSFLNMSVLRACIDSNVAYI  109 (419)
Q Consensus        82 ~dvVin~~~p~~~~~v~~a~i~~g~hyv  109 (419)
T Consensus        71 ~d~vV~SPGI~~~~p~l~~a~~~gi~i~   98 (487)
T PRK03369         71 YALVVTSPGFPPTAPVLAAAAAAGVPIW   98 (487)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf             7889989957998999999998899076