HHsearch alignment for GI: 254780742 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.64 E-value=0.017 Score=35.61 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=52.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 73199984987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r 2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN 81 (419)
Q Consensus 2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~ 81 (419)
T Consensus 6 ~k~v~V~GlG~sG~s~~~~L~~~G---~~v~~~D~~~~~~--~~~~l~~--------~~~~~-~g~~~~~~----~~--~ 65 (438)
T PRK03806 6 GKNVVIIGLGLTGLSCVDFFLARG---VTPRVMDTRMTPP--GLDKLPE--------NVERH-TGSLNDEW----LL--A 65 (438)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCC---CEEEEEECCCCCH--HHHHHHC--------CCCEE-ECCCCHHH----HC--C
T ss_conf 998999945788899999999789---9699998999900--5788645--------88466-57779668----06--7
Q ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 72999737610032789999862886896
Q gi|254780742|r 82 SQIIINVGSSFLNMSVLRACIDSNVAYID 110 (419)
Q Consensus 82 ~dvVin~~~p~~~~~v~~a~i~~g~hyvD 110 (419)
T Consensus 66 ~d~vV~SPGI~~~~p~~~~a~~~~i~i~s 94 (438)
T PRK03806 66 ADLIVASPGIALAHPSLSAAADAGVEIVG 94 (438)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCEEE
T ss_conf 99999899789989899999987994776