HHsearch alignment for GI: 254780742 and conserved domain: PRK12439

Probab=97.36  E-value=0.0045  Score=39.48  Aligned_cols=98  Identities=16%  Similarity=0.188  Sum_probs=61.4

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCC----CCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf             7319998498779999999996089872599963999999999987343024----555557308994378989999999
Q gi|254780742|r    2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKS----LKIDGKLAIHQVDALNIKAVVELI   77 (419)
Q Consensus         2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~D~~d~~~l~~~~   77 (419)
T Consensus         6 ~~KI~ViGaGawGTALA~~la~n~~----~v~w~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~-------t~dl~~a~   74 (340)
T PRK12439          6 EPKVVVLGGGSWGTTVASICARRGP----TLQWVRSEETAKDINDNHRNSRYLGNDVVLSDTLRA-------TTDFTEAA   74 (340)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC----EEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEE-------ECCHHHHH
T ss_conf             9928998969999999999995899----899968999999999828887689987558987289-------78999998


Q ss_pred             HHCCCCEEEECCCCCCCHHHHHH---HHHCCCCEEEEC
Q ss_conf             75397299973761003278999---986288689603
Q gi|254780742|r   78 KKTNSQIIINVGSSFLNMSVLRA---CIDSNVAYIDTA  112 (419)
Q Consensus        78 ~~~~~dvVin~~~p~~~~~v~~a---~i~~g~hyvD~s  112 (419)
T Consensus        75 ~--~adiii~avPS~~~r~~~~~l~~~l~~~~~iv~~s  110 (340)
T PRK12439         75 N--CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV  110 (340)
T ss_pred             H--CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             2--69989993680899999999986557887599732