HHsearch alignment for GI: 254780742 and conserved domain: PRK12548
>PRK12548 shikimate 5-dehydrogenase; Provisional.
Probab=98.51 E-value=3.4e-06 Score=60.55 Aligned_cols=135 Identities=18% Similarity=0.284 Sum_probs=92.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCH---HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 7319998498779999999996089872599963999---9999999873430245555573089943789899999997
Q gi|254780742|r 2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTL---QKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIK 78 (419)
Q Consensus 2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~ 78 (419)
T Consensus 126 ~k~vlIlGaGGaa~ai~~~l~~~g~--~~i~i~nr~~~~~~ra~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 198 (289)
T PRK12548 126 GKKLTIIGAGGAATAIQVQCALDGA--KEITIFNIKDDFYERAEQTVAKIKEEV-----PACIVHVYDLNDTEKLNAEIA 198 (289)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCC--CEEEEEECCCHHHHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHC
T ss_conf 7747999521679999999997699--889999688148899999999998458-----776479851431666655432
Q ss_pred HCCCCEEEECCCCCC----C-HHHHH-HHHHCCCCEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHH
Q ss_conf 539729997376100----3-27899-99862886896036642000014420000357751088885188699537501
Q gi|254780742|r 79 KTNSQIIINVGSSFL----N-MSVLR-ACIDSNVAYIDTAIHESPLKICESPPWYNNYEWSLLDECRTKSITAILGAGFD 152 (419)
Q Consensus 79 ~~~~dvVin~~~p~~----~-~~v~~-a~i~~g~hyvD~s~~~~~~~~~~~~~~~~~~~~~l~~~a~~ag~~~i~~~G~~ 152 (419)
T Consensus 199 --~~dliINaT~~Gm~p~~~~~~~~~~~~~~~~~~v~D~vY~P~~T--------------~ll~~A~~~G~~~i~Gl--- 259 (289)
T PRK12548 199 --TSDILVNATLVGMHPNEDETPIKDTSVFRKDLVVADTVYNPKKT--------------KLLEDAEAAGCKTVGGL--- 259 (289)
T ss_pred --CCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC--------------HHHHHHHHCCCEEECHH---
T ss_conf --26744533565668775568887866738897899831388478--------------99999998829685729---
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 11488999999997
Q gi|254780742|r 153 PGVVNAFARLAQDE 166 (419)
Q Consensus 153 PGl~~lla~~~~~~ 166 (419)
T Consensus 260 ----~MLv~Qa~~~ 269 (289)
T PRK12548 260 ----GMLLWQGAEA 269 (289)
T ss_pred ----HHHHHHHHHH
T ss_conf ----9999999999