HHsearch alignment for GI: 254780742 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=98.09 E-value=9.5e-06 Score=57.58 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=52.8
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 1999849-877999999999608987259996399999999998734302455555730899437898999999975397
Q gi|254780742|r 4 NVLIIGA-GGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTNS 82 (419)
Q Consensus 4 ~ilv~Ga-G~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~~ 82 (419)
T Consensus 1 rilitGa~GQlG~~L~~~l~~~g----~~~~~~~~~~~~~~---------------~~~~~~~Dl~dP~~l~~~~r~~~P 61 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSKPG----RVVVALTRSTRLKL---------------AARWSQLDLTDPEALEELLRAIRP 61 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCCCC----CEEEEECCCCCCCH---------------HHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 97887387567999999707888----27864368777611---------------336544062246889999985287
Q ss_pred CEEEECCCCC
Q ss_conf 2999737610
Q gi|254780742|r 83 QIIINVGSSF 92 (419)
Q Consensus 83 dvVin~~~p~ 92 (419)
T Consensus 62 d~vvntAAYT 71 (317)
T TIGR01214 62 DAVVNTAAYT 71 (317)
T ss_pred CEEEECCHHC
T ss_conf 5376230110