HHsearch alignment for GI: 254780742 and conserved domain: cd01483

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=98.27  E-value=2.7e-05  Score=54.56  Aligned_cols=103  Identities=16%  Similarity=0.258  Sum_probs=74.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECC-------------------HHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             1999849877999999999608987259996399-------------------999999998734302455555730899
Q gi|254780742|r    4 NVLIIGAGGVAHVVAHKCAQNNDILGDINIASRT-------------------LQKCSKIIDSIYKKKSLKIDGKLAIHQ   64 (419)
Q Consensus         4 ~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~   64 (419)
T Consensus         1 kVlivG~GglG~~va~~L~~~Gv--~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np---~v~i~~~~   75 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGV--GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP---GVNVTAVP   75 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC---CCEEEEEE
T ss_conf             99999979899999999999379--71999978987500146422589889492248999999985689---83899994


Q ss_pred             ECCCCHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHCCCCEEEECCC
Q ss_conf             43789899999997539729997376100-327899998628868960366
Q gi|254780742|r   65 VDALNIKAVVELIKKTNSQIIINVGSSFL-NMSVLRACIDSNVAYIDTAIH  114 (419)
Q Consensus        65 ~D~~d~~~l~~~~~~~~~dvVin~~~p~~-~~~v~~a~i~~g~hyvD~s~~  114 (419)
T Consensus        76 ~~~~~-~~~~~~~~--~~dvvi~~~D~~~~r~~l~~~~~~~~ip~i~~~~~  123 (143)
T cd01483          76 EGISE-DNLDDFLD--GVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL  123 (143)
T ss_pred             CCCCH-HHHHHHHC--CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             56896-46999975--99999987799999999999999869988996366