HHsearch alignment for GI: 254780742 and conserved domain: cd05197
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.69 E-value=0.015 Score=35.98 Aligned_cols=122 Identities=10% Similarity=0.102 Sum_probs=74.0
Q ss_pred EEEEECCCHH-HHHHHHHHHHCCC--CCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 1999849877-9999999996089--872599963999999999987343024555557308994378989999999753
Q gi|254780742|r 4 NVLIIGAGGV-AHVVAHKCAQNND--ILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKT 80 (419)
Q Consensus 4 ~ilv~GaG~v-G~~~~~~L~~~~~--~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~ 80 (419)
T Consensus 2 KI~iIGaGS~~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~~~-~~~~~~~~~v~~-----ttd~~eAl~-- 73 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRY-VEEVGADIKFEK-----TMDLEDAII-- 73 (425)
T ss_pred EEEEECCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHHHH-HHHHCCCEEEEE-----ECCHHHHHC--
T ss_conf 799989836878999999983843378898999889999999999999999-996199838999-----789999856--
Q ss_pred CCCEEEECCCCC-CCH--HHHHHHHHCCCCEEEECCCCCCHHCCCCCCCCHHHHHH
Q ss_conf 972999737610-032--78999986288689603664200001442000035775
Q gi|254780742|r 81 NSQIIINVGSSF-LNM--SVLRACIDSNVAYIDTAIHESPLKICESPPWYNNYEWS 133 (419)
Q Consensus 81 ~~dvVin~~~p~-~~~--~v~~a~i~~g~hyvD~s~~~~~~~~~~~~~~~~~~~~~ 133 (419)
T Consensus 74 gADfVi~~irvGg~~~r~~De~IplkyGv~gqeT~G~GG~~~alRtIPv~l~ia~~ 129 (425)
T cd05197 74 DADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARK 129 (425)
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999998875670578999868987591444377788999998429999999999