HHsearch alignment for GI: 254780742 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=97.55 E-value=0.00039 Score=46.66 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=66.2
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 1999849-877999999999608987259996399999999998734302455555730899437898999999975397
Q gi|254780742|r 4 NVLIIGA-GGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTNS 82 (419)
Q Consensus 4 ~ilv~Ga-G~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~~ 82 (419)
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~--~~~~d~~~~~------~~~~~~~~----~~~~~~~~--~~ 66 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDF-ELVAAVDRPGSS--LLGSDAGELA------GPLGVPVT----DDLEEVLA--DA 66 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCC-EEEEEEECCCCC--CCCCCCCCCC------CCCCCEEC----CCHHHHCC--CC
T ss_conf 8999889887899999999858996-899999438961--2254310014------67871112----44777515--78
Q ss_pred CEEEECCCCCCCHHHHHHHHHCCCCEEE-ECCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 2999737610032789999862886896-036642000014420000357751088885188699
Q gi|254780742|r 83 QIIINVGSSFLNMSVLRACIDSNVAYID-TAIHESPLKICESPPWYNNYEWSLLDECRTKSITAI 146 (419)
Q Consensus 83 dvVin~~~p~~~~~v~~a~i~~g~hyvD-~s~~~~~~~~~~~~~~~~~~~~~l~~~a~~ag~~~i 146 (419)
T Consensus 67 DVvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG~s~------------~~~~~i~~~a~~ipi~~a 119 (122)
T pfam01113 67 DVLIDFTTPEATLENLELALKHGKPLVIGTTGFTE------------EQLAELKEAAKKIPIVIA 119 (122)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCH------------HHHHHHHHHHCCCCEEEC
T ss_conf 88999068789999999999679988998999999------------999999998445988982