HHsearch alignment for GI: 254780742 and conserved domain: pfam01488

>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=98.52  E-value=8.2e-07  Score=64.76  Aligned_cols=95  Identities=24%  Similarity=0.419  Sum_probs=66.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf             73199984987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r    2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN   81 (419)
Q Consensus         2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~   81 (419)
T Consensus        12 ~~~vlVIGaG~~~~~~~~~L~~~g~--~~i~v~nRt~~ka~~la~~~~~~-------~~~~~--~---~~~l~~~l~--~   75 (134)
T pfam01488        12 GKKVLLIGAGEMARLAAKHLLSKGA--KKITIANRTLEKAKELAEEFGGE-------EVEAL--P---LDELEELLA--E   75 (134)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCHHHHHHHHHHCCCC-------CEEEE--E---CHHHHHHHH--H
T ss_conf             8989999960999999999997599--88999547578999999984997-------25898--5---135441363--1


Q ss_pred             CCEEEECCCCC---CCHHHHHHHHHCCCCEEEECC
Q ss_conf             72999737610---032789999862886896036
Q gi|254780742|r   82 SQIIINVGSSF---LNMSVLRACIDSNVAYIDTAI  113 (419)
Q Consensus        82 ~dvVin~~~p~---~~~~v~~a~i~~g~hyvD~s~  113 (419)
T Consensus        76 ~DivI~aT~s~~~ii~~~~~~~~-~~~~~iiDLav  109 (134)
T pfam01488        76 ADIVISATSAPTPIITKEMVEEA-LKGLLFVDIAV  109 (134)
T ss_pred             CCEEEEECCCCCCEECHHHHHHC-CCCEEEEEECC
T ss_conf             99999925999736489999744-39859998347