HHsearch alignment for GI: 254780742 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=98.52 E-value=8.2e-07 Score=64.76 Aligned_cols=95 Identities=24% Similarity=0.419 Sum_probs=66.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 73199984987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r 2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN 81 (419)
Q Consensus 2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~ 81 (419)
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~--~~i~v~nRt~~ka~~la~~~~~~-------~~~~~--~---~~~l~~~l~--~ 75 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGA--KKITIANRTLEKAKELAEEFGGE-------EVEAL--P---LDELEELLA--E 75 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCHHHHHHHHHHCCCC-------CEEEE--E---CHHHHHHHH--H
T ss_conf 8989999960999999999997599--88999547578999999984997-------25898--5---135441363--1
Q ss_pred CCEEEECCCCC---CCHHHHHHHHHCCCCEEEECC
Q ss_conf 72999737610---032789999862886896036
Q gi|254780742|r 82 SQIIINVGSSF---LNMSVLRACIDSNVAYIDTAI 113 (419)
Q Consensus 82 ~dvVin~~~p~---~~~~v~~a~i~~g~hyvD~s~ 113 (419)
T Consensus 76 ~DivI~aT~s~~~ii~~~~~~~~-~~~~~iiDLav 109 (134)
T pfam01488 76 ADIVISATSAPTPIITKEMVEEA-LKGLLFVDIAV 109 (134)
T ss_pred CCEEEEECCCCCCEECHHHHHHC-CCCEEEEEECC
T ss_conf 99999925999736489999744-39859998347