HHsearch alignment for GI: 254780742 and conserved domain: pfam02254
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=97.77 E-value=0.001 Score=43.90 Aligned_cols=110 Identities=12% Similarity=0.177 Sum_probs=74.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCE
Q ss_conf 99984987799999999960898725999639999999999873430245555573089943789899999997539729
Q gi|254780742|r 5 VLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTNSQI 84 (419)
Q Consensus 5 ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~~dv 84 (419)
T Consensus 1 viI~G~g~~G~~la~~L~~~~----~v~vId~d~~~~~~~~~~-----------~~~vi~GD~~~~~~L~~a~i~-~a~~ 64 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG----PVVVIDKDPERVEELREE-----------GVPVVVGDATDEEVLEEAGIE-DADA 64 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHC-----------CCEEEEEECCCHHHHHHHCCC-CCCE
T ss_conf 999878889999999998089----999999987998778866-----------986999956886678761920-2879
Q ss_pred EEECCCCCC-CHHHHHHHHHC-CC-CEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 997376100-32789999862-88-68960366420000144200003577510888851886995
Q gi|254780742|r 85 IINVGSSFL-NMSVLRACIDS-NV-AYIDTAIHESPLKICESPPWYNNYEWSLLDECRTKSITAIL 147 (419)
Q Consensus 85 Vin~~~p~~-~~~v~~a~i~~-g~-hyvD~s~~~~~~~~~~~~~~~~~~~~~l~~~a~~ag~~~i~ 147 (419)
T Consensus 65 vi~~~~~d~~n~~~~~~~r~~~~~~~iiar~~~~-----------------~~~~~l~~~Gad~vi 113 (115)
T pfam02254 65 VVAATGDDEANILIVLLARELNPAKKIIARANDP-----------------EHAELLRRLGADEVI 113 (115)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCH-----------------HHHHHHHHCCCCEEE
T ss_conf 9996298499999999999978998099998789-----------------999999976989997