HHsearch alignment for GI: 254780742 and conserved domain: pfam04321

>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=97.96  E-value=0.00013  Score=49.82  Aligned_cols=58  Identities=19%  Similarity=0.414  Sum_probs=47.6

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf             999849-8779999999996089872599963999999999987343024555557308994378989999999753972
Q gi|254780742|r    5 VLIIGA-GGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTNSQ   83 (419)
Q Consensus         5 ilv~Ga-G~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~~d   83 (419)
T Consensus         1 ILVtG~~GfiGs~l~~~L~~~g~---~v~~~~r~--------------------------~~D~~d~~~l~~~~~~~~pd   51 (284)
T pfam04321         1 ILVTGANGQLGRELTRLLAERGV---EVVALDRP--------------------------ELDLTDPEAVAALVREARPD   51 (284)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCC---EEEEECCC--------------------------CCCCCCHHHHHHHHHHCCCC
T ss_conf             69964899899999999986899---89995486--------------------------25788999999999864997


Q ss_pred             EEEECCCC
Q ss_conf             99973761
Q gi|254780742|r   84 IIINVGSS   91 (419)
Q Consensus        84 vVin~~~p   91 (419)
T Consensus        52 ~VihlAa~   59 (284)
T pfam04321        52 VVVNAAAY   59 (284)
T ss_pred             EEEECCCC
T ss_conf             99972413