HHsearch alignment for GI: 254780742 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=97.96 E-value=0.00013 Score=49.82 Aligned_cols=58 Identities=19% Similarity=0.414 Sum_probs=47.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 999849-8779999999996089872599963999999999987343024555557308994378989999999753972
Q gi|254780742|r 5 VLIIGA-GGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTNSQ 83 (419)
Q Consensus 5 ilv~Ga-G~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~~d 83 (419)
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~---~v~~~~r~--------------------------~~D~~d~~~l~~~~~~~~pd 51 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGV---EVVALDRP--------------------------ELDLTDPEAVAALVREARPD 51 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC---EEEEECCC--------------------------CCCCCCHHHHHHHHHHCCCC
T ss_conf 69964899899999999986899---89995486--------------------------25788999999999864997
Q ss_pred EEEECCCC
Q ss_conf 99973761
Q gi|254780742|r 84 IIINVGSS 91 (419)
Q Consensus 84 vVin~~~p 91 (419)
T Consensus 52 ~VihlAa~ 59 (284)
T pfam04321 52 VVVNAAAY 59 (284)
T ss_pred EEEECCCC
T ss_conf 99972413