HHsearch alignment for GI: 254780743 and conserved domain: COG1573
>COG1573 Uracil-DNA glycosylase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=321.59 Aligned_cols=189 Identities=28% Similarity=0.528 Sum_probs=178.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCC
Q ss_conf 469989999999600388520028772236788888489985789830011200120700489999998609862-2210
Q gi|254780743|r 73 KACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMR-TQIH 151 (261)
Q Consensus 73 ~~~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r-~~vy 151 (261)
T Consensus 6 ~~~~~~~l~~~i~~c~~C~~~~~~~~~v~~~g~~~a~i~iVGeaPG~~~~~tG~pF~g~aG~~L~~~l~~~~~~~~~~~~ 85 (202)
T COG1573 6 AAELLEELREEIEACRRCPLLKDRTPVVPGGGNPTARILIVGEAPGAGEDRTGRPFVGKAGDLLDRILGAIGGLRYEDVY 85 (202)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 77789999987631877744032388887788887788998379971311059815580489999999985166567667
Q ss_pred EEEEEECC-CCCCC---CCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECC-CCCE
Q ss_conf 00000012-25666---6778899999999999863229767995255999998446533101106505766428-9737
Q gi|254780743|r 152 ISMISPWH-PPGNR---NLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTP-HSII 226 (261)
Q Consensus 152 itn~vkcr-Pp~nr---~p~~~ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~-~~~i 226 (261)
T Consensus 86 it~~~~~~~~p~~~~~~~p~~~E~~~c~p~l~~~i~l~~pkviv~LG~~A~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 165 (202)
T COG1573 86 ITNVVKCRYPPGNRPPGDPTPEEIKACRPFLEAEIALIRPKVILLLGEYAAKSLLGLKGEPITELRGRWGAYRPKGGGGI 165 (202)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCE
T ss_conf 75243543689999999969889864056799998427988899807899999863156651002542443325678762
Q ss_pred EEEEEECHHHHHCCH--HHHHHHHHHHHHHHHHHHCC
Q ss_conf 899970803883365--98999999999999998609
Q gi|254780743|r 227 PTLATVHPQELIQYP--LIKKNTWHALITLKKALKNL 261 (261)
Q Consensus 227 ~~~pt~HPs~LLr~P--~~K~~aW~DL~~l~~~L~~l 261 (261)
T Consensus 166 ~~~p~~HPs~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 202 (202)
T COG1573 166 RVFPTYHPSPLNRNPGKLNKWFFWEDLKKLKALLRQL 202 (202)
T ss_pred EEEEECCCCHHHHCHHHHCHHHHHHHHHHHHHHHHCC
T ss_conf 8986058709873821207599999999999986459