HHsearch alignment for GI: 254780743 and conserved domain: COG3663
>COG3663 Mug G:T/U mismatch-specific DNA glycosylase [DNA replication, recombination, and repair].
Probab=93.64 E-value=0.33 Score=26.91 Aligned_cols=146 Identities=12% Similarity=0.023 Sum_probs=80.0
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCEEEEEECCC-----CCCCCCCHHHHHHHH
Q ss_conf 67888884899857898300112001207004899999986098-622210000000122-----566667788999999
Q gi|254780743|r 102 ATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEI-MRTQIHISMISPWHP-----PGNRNLSNIEMEICR 175 (261)
Q Consensus 102 g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl-~r~~vyitn~vkcrP-----p~nr~p~~~ei~~c~ 175 (261)
T Consensus 4 ~vl~~~~~vli~Gs~Pg~~S~~~gfyya~P~Nr-FWr~l~~v~~~d~~l~~~~~e~~~~~~~g~l~~~~i~~~~~~~~~~ 82 (169)
T COG3663 4 DVLDPGLRVLILGSFPGEDSRAAGFYYAHPRNR-FWRVLGLVFFTDAQLEPQEYEKLLDYAKGFLKLRGIGLWDVLEVAK 82 (169)
T ss_pred CCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHH-HHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 636998769998369866567506877882124-9999988706831244446665232000156642654035778877
Q ss_pred H-------HHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHCCHHHHHHHH
Q ss_conf 9-------999986322976799525599999844653310110650576642897378999708038833659899999
Q gi|254780743|r 176 P-------IIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQYPLIKKNTW 248 (261)
Q Consensus 176 p-------~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr~P~~K~~aW 248 (261)
T Consensus 83 re~~~~~d~~ie~~e~~d~aall~~~p-~~~~i~-~~g~~a~~~~~---~l~~~~~~~~vlpssSpa~R~~s~e~l~~~~ 157 (169)
T COG3663 83 RELHNSLDKLIEKVEANDLAALLIRGP-QLREIG-FTGGKAGELPQ---TLAGGGTETWVLPSSSPAARGLSLEKLPSAW 157 (169)
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHH-HHHHHH-CCCCCCEECCC---CCCCCCEEEEECCCCCHHHHCCCHHHHHHHH
T ss_conf 753451555555234203889998746-888665-16976504453---2334643467557787021033388889999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780743|r 249 HALIT 253 (261)
Q Consensus 249 ~DL~~ 253 (261)
T Consensus 158 r~l~~ 162 (169)
T COG3663 158 RALPQ 162 (169)
T ss_pred HHHHH
T ss_conf 99999