HHsearch alignment for GI: 254780743 and conserved domain: TIGR00758
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4; InterPro: IPR005273 This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The function of these proteins is unknown. .
Probab=100.00 E-value=0 Score=461.51 Aligned_cols=175 Identities=27% Similarity=0.530 Sum_probs=165.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCCC-CCCEEEEEECCCCCCC
Q ss_conf 0388520028772236788888489985789830011200120700489999998-6098622-2100000001225666
Q gi|254780743|r 87 FHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQ-SIEIMRT-QIHISMISPWHPPGNR 164 (261)
Q Consensus 87 ~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~-aigl~r~-~vyitn~vkcrPp~nr 164 (261)
T Consensus 1 C~~C~L~~~rT~~VpGdG~~~a~i~~VGEAPG~~EDr~G~PFVG~aGkLLd~lL~e~iGl~R~q~vYITNvvKCRPP~NR 80 (185)
T TIGR00758 1 CRKCELHKTRTNAVPGDGNPDAEIMFVGEAPGREEDRKGRPFVGRAGKLLDELLEEAIGLSREQNVYITNVVKCRPPNNR 80 (185)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC
T ss_conf 98886522377641077756454789854788224207898354005689999999837443786235225654685222
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCC---CCCCHHCCCEEEEEE--CCCCCEEEEEEECHHHHHC
Q ss_conf 67788999999999998632297679952559999984465---331011065057664--2897378999708038833
Q gi|254780743|r 165 NLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNND---AQKTYQNLGKWSNLC--TPHSIIPTLATVHPQELIQ 239 (261)
Q Consensus 165 ~p~~~ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~---~~~i~~~rG~~~~~~--~~~~~i~~~pt~HPs~LLr 239 (261)
T Consensus 81 ~PT~eE~~~C~pyL~~~i~lI~Pkvi~~lGr~Aa~~~l~~~gl~~~~I~k~rG~vf~~~~k~~~~~i~~~~~YHPA~~Lr 160 (185)
T TIGR00758 81 DPTPEEVEACAPYLVKQIELIRPKVIICLGRTAAQSILGKAGLEFEGITKVRGRVFEYRNKILGTKIKVLATYHPAALLR 160 (185)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEEEEECCEECCCCEEEEEEECCHHHHC
T ss_conf 38989998515788999975098068996027889887652876267301211577314804276047998643436416
Q ss_pred CHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6598999999999999998609
Q gi|254780743|r 240 YPLIKKNTWHALITLKKALKNL 261 (261)
Q Consensus 240 ~P~~K~~aW~DL~~l~~~L~~l 261 (261)
T Consensus 161 ~P~l~~~~~~Df~~~k~~l~el 182 (185)
T TIGR00758 161 NPQLRRELEEDFKTIKARLKEL 182 (185)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9623205889899999999997