HHsearch alignment of GI: 254780743 and MMDB domain: 1ui0_A_
>1ui0_A (A:) Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=315.64 Aligned_cols=182 Identities=29% Similarity=0.530 Sum_probs=173.5
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 99899999996003885200287722367888884899857898300112001207004899999986098622210000
Q gi|254780743|r 75 CSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISM 154 (261)
Q Consensus 75 ~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyitn 154 (261)
.+|++|++.+.+|..|+++..+.++|+|.|+++|+|||||++||.+|+++|.||+|++|++|++||.++||++++||+||
T Consensus 1 ~~l~~L~~~i~~C~~C~~~~~~~~~v~~~g~~~a~iliIg~~P~~~~~~~G~~f~g~aG~~L~~~l~~~gl~~~~vyit~ 80 (205)
T 1ui0_A 1 MTLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITN 80 (205)
T ss_dssp -CHHHHHHHHTTCCSSGGGTTCSSCCCCEECTTCSEEEEESCCCHHHHHHSCSSCSHHHHHHHHHHHHHTCCGGGSEEEE
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHEEEEE
T ss_conf 98899999986688898987898855578999999999978214544444411153504368888998398899958861
Q ss_pred EEECCCCCCCCCCHHHHHHHHH-HHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 0001225666677889999999-999986322976799525599999844653310110650576642897378999708
Q gi|254780743|r 155 ISPWHPPGNRNLSNIEMEICRP-IIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVH 233 (261)
Q Consensus 155 ~vkcrPp~nr~p~~~ei~~c~p-~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~H 233 (261)
++||+|++|+.|+..|+..|++ ||.+||++++|++||++|+.|.+++++.. .++.+.+|+|+++ .+++++++||
T Consensus 81 lvkc~p~~~~~~~~~ei~~c~~~~L~~ei~l~~P~~ii~lG~~a~~~ll~~~-~~~~~~~g~~~~~----~~~~~~~~~h 155 (205)
T 1ui0_A 81 IVKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEK-VSITKVRGKWYEW----HGIKVFPMFH 155 (205)
T ss_dssp SCSSCCGGGCCCCHHHHHHHHHHTHHHHHHHHCCSEEEEBSHHHHHHHHTSC-CCHHHHTTCCEEE----TTEEECCBCC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHEEHHHHCC-CCHHHHCCCEEEC----CCCEEEEECC
T ss_conf 4646033456798599999999999999985488489952501000113103-5201214834862----8977999828
Q ss_pred HHHHHCC-----HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0388336-----598999999999999998609
Q gi|254780743|r 234 PQELIQY-----PLIKKNTWHALITLKKALKNL 261 (261)
Q Consensus 234 Ps~LLr~-----P~~K~~aW~DL~~l~~~L~~l 261 (261)
||+|++| |+.|+.+|+||+.+++.|+++
T Consensus 156 PS~l~~~~~~~~p~~~~~~~~~L~~~~~~l~~~ 188 (205)
T 1ui0_A 156 PAYLLRNPSRAPGSPKHLTWLDIQEVKRALDAL 188 (205)
T ss_dssp HHHHHHSCCCSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 689876925343046789999999999999726