HHsearch alignment of GI: 254780743 and MMDB domain: 1vk2_A_
>1vk2_A (A:) Uracil-DNA glycosylase TM0511; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=317.64 Aligned_cols=191 Identities=18% Similarity=0.366 Sum_probs=180.2
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 23002469989999999600388520028772236788888489985789830011200120700489999998609862
Q gi|254780743|r 68 DSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMR 147 (261)
Q Consensus 68 ~~~a~~~~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r 147 (261)
...+....++++|++.+.+|..|+++..++++++|.|+++|+|||||++||.+|+++|++|+|++|++|++||.++||++
T Consensus 11 ~~~~~~~~~~~~L~~~i~~c~~c~l~~~~~~~~~~~g~~~a~il~ig~~Pg~~~~~~G~~f~g~sG~~L~~~L~~~gl~~ 90 (204)
T 1vk2_A 11 HHXYTREELXEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGXLLTELLRESGIRR 90 (204)
T ss_dssp --CCCHHHHHHHHHHHHHHCCSSGGGGTCSSCCCCEECTTCSEEEEESCCCHHHHHHTCSSCSHHHHHHHHHHHHTTCCG
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCEEHHHHHHHHHHHHHHHCCCC
T ss_conf 31267999999999999707789798899887788899987889995433566787487606636889999987620230
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEE
Q ss_conf 22100000001225666677889999999999986322976799525599999844653310110650576642897378
Q gi|254780743|r 148 TQIHISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIP 227 (261)
Q Consensus 148 ~~vyitn~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~ 227 (261)
+++|+||++||+|++||.|+..|+..|++||.+||++++|++||+||..|++++++....++...||+|+++. .+++
T Consensus 91 ~~~~itn~vk~~~~~~~~~~~~e~~~c~~~L~~ei~~i~P~~iv~lG~~a~~~~l~~~~~~~~~~~G~~~~~~---~~~~ 167 (204)
T 1vk2_A 91 EDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPIDWL---GGKK 167 (204)
T ss_dssp GGSEEEESCSSCCGGGCCCCHHHHHHHHHHHHHHHHHHCCSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECG---GGCE
T ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCEEECC---CCCE
T ss_conf 3647864431447644456709999745223555540487317730658899986245665431367358868---9987
Q ss_pred EEEEECHHHHHCCH--HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99970803883365--98999999999999998609
Q gi|254780743|r 228 TLATVHPQELIQYP--LIKKNTWHALITLKKALKNL 261 (261)
Q Consensus 228 ~~pt~HPs~LLr~P--~~K~~aW~DL~~l~~~L~~l 261 (261)
+++|||||+++++| ..|+.+|+||+.+++.|+++
T Consensus 168 v~~~~hPs~l~~~~~~~~k~~~~~~l~~~~~~l~~~ 203 (204)
T 1vk2_A 168 VIPTFHPSYLLRNRSNELRRIVLEDIEKAKSFIKKE 203 (204)
T ss_dssp EEEECCHHHHHHCCCHHHHHHHHHHHHHHHTTSCC-
T ss_pred EEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999849779877938788999999999999999853