HHsearch alignment of GI: 254780743 and MMDB domain: 2d3y_A_
>2d3y_A (A:) Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus HB8} PDB: 2ddg_A* 2dem_A* 2dp6_A*
Probab=100.00 E-value=0 Score=281.26 Aligned_cols=182 Identities=12% Similarity=0.131 Sum_probs=162.8
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-CCCCCCCCCC-CCHHHHHHHHHHCCCCCCCCC
Q ss_conf 69989999999600388520028772236788888489985789830-0112001207-004899999986098622210
Q gi|254780743|r 74 ACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDS-DNISGKPFSG-KTGNMLDKMLQSIEIMRTQIH 151 (261)
Q Consensus 74 ~~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~-Ed~~G~pF~G-~aG~lL~~mL~aigl~r~~vy 151 (261)
+..++.|++.+..|..|.+++.+.++|+|.|+++|+||||||+||.. ||++|+||+| .+|++|+++|.++||+++++|
T Consensus 17 ~~~~~~l~~~~~~~~~~~l~~~~~~~v~g~g~~~a~vl~VgeaPg~~~e~~~G~pF~g~~~g~~l~~~l~~~Gl~~~~~~ 96 (219)
T 2d3y_A 17 PRLVAWREEVVGRKRAFRGEPYWARPVPGFGDPEARILLFGLAPGAHGSNRTGRPFTGDASGAFLYPLLHEAGLSSKPES 96 (219)
T ss_dssp HHHHHHHHHTTTTSGGGTTSCCCCSCCCCEECTTCSEEEEESCCCTTTHHHHSSTTTTSHHHHHHHHHHHHTTCBSCSCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCHH
T ss_conf 78999999998620122374136883289999774789960542001023478641034037788888998467643010
Q ss_pred ------------EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHCCC---CCCCHHCCCE
Q ss_conf ------------0000001225666677889999999999986322-97679952559999984465---3310110650
Q gi|254780743|r 152 ------------ISMISPWHPPGNRNLSNIEMEICRPIIMRQIELI-SPKILLFIGNKTKNFFFNND---AQKTYQNLGK 215 (261)
Q Consensus 152 ------------itn~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li-~Pk~ii~lG~~a~~~ll~~~---~~~i~~~rG~ 215 (261)
+||++||+| +||.|+..|++.|++||.+||+++ +|++||+||+.|.+++++.. ...+...||+
T Consensus 97 ~~~~~~~~~~~~~t~~vk~~~-~~r~p~~~ei~~c~~~L~~ei~ll~~P~iIv~lG~~a~~~~~~~~~~~~~~~~~~~g~ 175 (219)
T 2d3y_A 97 LPGDDLRLYGVYLTAAVRCAP-PKNKPTPEELRACARWTEVELGLLPEVRVYVALGRIALEALLAHFGLRKSAHPFRHGA 175 (219)
T ss_dssp CTTSCCCBSSEEEEESCCSCC-GGGCCCHHHHHHHHHHHHHHHHTCTTCCEEEEESHHHHHHHHHHHTCCTTTSCCCTTC
T ss_pred CCCCCCCCCCEEECCCCCCCC-CCCCCCCHHHHHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf 012101011201015532367-6668970888884866799999842861454303899998776516521223420221
Q ss_pred EEEEECCCCCEEEEEEECHHHHHCCHHH--HHHHHHHHHHHHHHHH
Q ss_conf 5766428973789997080388336598--9999999999999986
Q gi|254780743|r 216 WSNLCTPHSIIPTLATVHPQELIQYPLI--KKNTWHALITLKKALK 259 (261)
Q Consensus 216 ~~~~~~~~~~i~~~pt~HPs~LLr~P~~--K~~aW~DL~~l~~~L~ 259 (261)
++.+. .+++++|+||||+++|||.. +..+|+||+++++.|.
T Consensus 176 ~~~~~---~~~~~~~~~hPs~l~~~~~~~~~~~~~~dl~~l~~~l~ 218 (219)
T 2d3y_A 176 HYPLP---GGRHLLASYHVSRQNTQTGRLTREMFLEVLMEAKRLAG 218 (219)
T ss_dssp EEEET---TTEEEEEECCCSHHHHHHTSSCHHHHHHHHHHHHHHTT
T ss_pred EEECC---CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 77379---99389998688866658792009999999999999719