HHsearch alignment of GI: 254780743 and MMDB domain: 2d3y_A_

>2d3y_A (A:) Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus HB8} PDB: 2ddg_A* 2dem_A* 2dp6_A*
Probab=100.00  E-value=0  Score=281.26  Aligned_cols=182  Identities=12%  Similarity=0.131  Sum_probs=162.8

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-CCCCCCCCCC-CCHHHHHHHHHHCCCCCCCCC
Q ss_conf             69989999999600388520028772236788888489985789830-0112001207-004899999986098622210
Q gi|254780743|r   74 ACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDS-DNISGKPFSG-KTGNMLDKMLQSIEIMRTQIH  151 (261)
Q Consensus        74 ~~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~-Ed~~G~pF~G-~aG~lL~~mL~aigl~r~~vy  151 (261)
                      +..++.|++.+..|..|.+++.+.++|+|.|+++|+||||||+||.. ||++|+||+| .+|++|+++|.++||+++++|
T Consensus        17 ~~~~~~l~~~~~~~~~~~l~~~~~~~v~g~g~~~a~vl~VgeaPg~~~e~~~G~pF~g~~~g~~l~~~l~~~Gl~~~~~~   96 (219)
T 2d3y_A           17 PRLVAWREEVVGRKRAFRGEPYWARPVPGFGDPEARILLFGLAPGAHGSNRTGRPFTGDASGAFLYPLLHEAGLSSKPES   96 (219)
T ss_dssp             HHHHHHHHHTTTTSGGGTTSCCCCSCCCCEECTTCSEEEEESCCCTTTHHHHSSTTTTSHHHHHHHHHHHHTTCBSCSCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCHH
T ss_conf             78999999998620122374136883289999774789960542001023478641034037788888998467643010


Q ss_pred             ------------EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHCCC---CCCCHHCCCE
Q ss_conf             ------------0000001225666677889999999999986322-97679952559999984465---3310110650
Q gi|254780743|r  152 ------------ISMISPWHPPGNRNLSNIEMEICRPIIMRQIELI-SPKILLFIGNKTKNFFFNND---AQKTYQNLGK  215 (261)
Q Consensus       152 ------------itn~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li-~Pk~ii~lG~~a~~~ll~~~---~~~i~~~rG~  215 (261)
                                  +||++||+| +||.|+..|++.|++||.+||+++ +|++||+||+.|.+++++..   ...+...||+
T Consensus        97 ~~~~~~~~~~~~~t~~vk~~~-~~r~p~~~ei~~c~~~L~~ei~ll~~P~iIv~lG~~a~~~~~~~~~~~~~~~~~~~g~  175 (219)
T 2d3y_A           97 LPGDDLRLYGVYLTAAVRCAP-PKNKPTPEELRACARWTEVELGLLPEVRVYVALGRIALEALLAHFGLRKSAHPFRHGA  175 (219)
T ss_dssp             CTTSCCCBSSEEEEESCCSCC-GGGCCCHHHHHHHHHHHHHHHHTCTTCCEEEEESHHHHHHHHHHHTCCTTTSCCCTTC
T ss_pred             CCCCCCCCCCEEECCCCCCCC-CCCCCCCHHHHHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf             012101011201015532367-6668970888884866799999842861454303899998776516521223420221


Q ss_pred             EEEEECCCCCEEEEEEECHHHHHCCHHH--HHHHHHHHHHHHHHHH
Q ss_conf             5766428973789997080388336598--9999999999999986
Q gi|254780743|r  216 WSNLCTPHSIIPTLATVHPQELIQYPLI--KKNTWHALITLKKALK  259 (261)
Q Consensus       216 ~~~~~~~~~~i~~~pt~HPs~LLr~P~~--K~~aW~DL~~l~~~L~  259 (261)
                      ++.+.   .+++++|+||||+++|||..  +..+|+||+++++.|.
T Consensus       176 ~~~~~---~~~~~~~~~hPs~l~~~~~~~~~~~~~~dl~~l~~~l~  218 (219)
T 2d3y_A          176 HYPLP---GGRHLLASYHVSRQNTQTGRLTREMFLEVLMEAKRLAG  218 (219)
T ss_dssp             EEEET---TTEEEEEECCCSHHHHHHTSSCHHHHHHHHHHHHHHTT
T ss_pred             EEECC---CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             77379---99389998688866658792009999999999999719