HHsearch results for GI: 254780743 and protein with PDBid: 1ui0_A

>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=100.00  E-value=0  Score=372.81  Aligned_cols=181  Identities=29%  Similarity=0.552  Sum_probs=174.4

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             98999999960038852002877223678888848998578983001120012070048999999860986222100000
Q gi|254780743|r   76 SLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMI  155 (261)
Q Consensus        76 ~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyitn~  155 (261)
                      ++++|+..+.+|+.|+|+++++++|+|.|+++|+||||||+||.+|+++|+||+|++|++|++||+++|+++++||+||+
T Consensus         2 ~l~~L~~~i~~C~~C~L~~~~~~~V~g~G~~~a~imiVg~aPg~~e~~~g~pf~G~aG~lL~~~L~~~gl~~~~vyitn~   81 (205)
T 1ui0_A            2 TLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITNI   81 (205)
T ss_dssp             CHHHHHHHHTTCCSSGGGTTCSSCCCCEECTTCSEEEEESCCCHHHHHHSCSSCSHHHHHHHHHHHHHTCCGGGSEEEES
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHEEEECC
T ss_conf             88999999867888999889978554789999999999588760776208864675788999999983999899886600


Q ss_pred             EECCCCCCCCCCHHHHHHHH-HHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECH
Q ss_conf             00122566667788999999-99999863229767995255999998446533101106505766428973789997080
Q gi|254780743|r  156 SPWHPPGNRNLSNIEMEICR-PIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHP  234 (261)
Q Consensus       156 vkcrPp~nr~p~~~ei~~c~-p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HP  234 (261)
                      |||+|++++.|+..|++.|+ +||.+||++++|++||+||++|++++++.. ..+.+.||+||++    .++++||||||
T Consensus        82 vkc~p~~~~~~~~~ei~~C~~p~L~~ei~li~Pkiii~lG~~a~~~~l~~~-~~~~~~rG~~~~~----~~~~~~~tyHP  156 (205)
T 1ui0_A           82 VKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEK-VSITKVRGKWYEW----HGIKVFPMFHP  156 (205)
T ss_dssp             CSSCCGGGCCCCHHHHHHHHHHTHHHHHHHHCCSEEEEBSHHHHHHHHTSC-CCHHHHTTCCEEE----TTEEECCBCCH
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCC-CCCCCCCCCEEEE----CCCEEEEECCC
T ss_conf             401377678998699999999999999985488367330899999986125-4412224713873----89669998597


Q ss_pred             HHHHCCHHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf             388336598-----999999999999998609
Q gi|254780743|r  235 QELIQYPLI-----KKNTWHALITLKKALKNL  261 (261)
Q Consensus       235 s~LLr~P~~-----K~~aW~DL~~l~~~L~~l  261 (261)
                      |||+|||+.     |+.+|+||++++++|++|
T Consensus       157 s~LlrnP~~~~~~~K~~~w~Dl~~lk~~L~~l  188 (205)
T 1ui0_A          157 AYLLRNPSRAPGSPKHLTWLDIQEVKRALDAL  188 (205)
T ss_dssp             HHHHHSCCCSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             68865935343046889999999999999827