HHsearch results for GI: 254780743 and protein with PDBid: 1ui0_A
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=100.00 E-value=0 Score=372.81 Aligned_cols=181 Identities=29% Similarity=0.552 Sum_probs=174.4
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 98999999960038852002877223678888848998578983001120012070048999999860986222100000
Q gi|254780743|r 76 SLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMI 155 (261)
Q Consensus 76 ~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyitn~ 155 (261)
++++|+..+.+|+.|+|+++++++|+|.|+++|+||||||+||.+|+++|+||+|++|++|++||+++|+++++||+||+
T Consensus 2 ~l~~L~~~i~~C~~C~L~~~~~~~V~g~G~~~a~imiVg~aPg~~e~~~g~pf~G~aG~lL~~~L~~~gl~~~~vyitn~ 81 (205)
T 1ui0_A 2 TLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITNI 81 (205)
T ss_dssp CHHHHHHHHTTCCSSGGGTTCSSCCCCEECTTCSEEEEESCCCHHHHHHSCSSCSHHHHHHHHHHHHHTCCGGGSEEEES
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHEEEECC
T ss_conf 88999999867888999889978554789999999999588760776208864675788999999983999899886600
Q ss_pred EECCCCCCCCCCHHHHHHHH-HHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECH
Q ss_conf 00122566667788999999-99999863229767995255999998446533101106505766428973789997080
Q gi|254780743|r 156 SPWHPPGNRNLSNIEMEICR-PIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHP 234 (261)
Q Consensus 156 vkcrPp~nr~p~~~ei~~c~-p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HP 234 (261)
|||+|++++.|+..|++.|+ +||.+||++++|++||+||++|++++++.. ..+.+.||+||++ .++++||||||
T Consensus 82 vkc~p~~~~~~~~~ei~~C~~p~L~~ei~li~Pkiii~lG~~a~~~~l~~~-~~~~~~rG~~~~~----~~~~~~~tyHP 156 (205)
T 1ui0_A 82 VKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEK-VSITKVRGKWYEW----HGIKVFPMFHP 156 (205)
T ss_dssp CSSCCGGGCCCCHHHHHHHHHHTHHHHHHHHCCSEEEEBSHHHHHHHHTSC-CCHHHHTTCCEEE----TTEEECCBCCH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCC-CCCCCCCCCEEEE----CCCEEEEECCC
T ss_conf 401377678998699999999999999985488367330899999986125-4412224713873----89669998597
Q ss_pred HHHHCCHHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf 388336598-----999999999999998609
Q gi|254780743|r 235 QELIQYPLI-----KKNTWHALITLKKALKNL 261 (261)
Q Consensus 235 s~LLr~P~~-----K~~aW~DL~~l~~~L~~l 261 (261)
|||+|||+. |+.+|+||++++++|++|
T Consensus 157 s~LlrnP~~~~~~~K~~~w~Dl~~lk~~L~~l 188 (205)
T 1ui0_A 157 AYLLRNPSRAPGSPKHLTWLDIQEVKRALDAL 188 (205)
T ss_dssp HHHHHSCCCSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 68865935343046889999999999999827