HHsearch results for GI: 254780743 and protein with PDBid: 1vk2_A

>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=100.00  E-value=0  Score=358.57  Aligned_cols=185  Identities=19%  Similarity=0.387  Sum_probs=174.7

Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCE
Q ss_conf             46998999999960038852002877223678888848998578983001120012070048999999860986222100
Q gi|254780743|r   73 KACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHI  152 (261)
Q Consensus        73 ~~~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyi  152 (261)
                      ....++.|++.+.+|+.|+|+.+++++|+|.|+++|+||||||+||.+|+++|+||+|+||++|++||.++|+++++||+
T Consensus        16 ~~~~l~~L~~~i~~C~~C~L~~~~~~~V~g~G~~~a~imiVgeaPg~~e~~~g~pf~g~sG~ll~~~l~~~gl~~~~vyi   95 (204)
T 1vk2_A           16 REELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYI   95 (204)
T ss_dssp             HHHHHHHHHHHHHHCCSSGGGGTCSSCCCCEECTTCSEEEEESCCCHHHHHHTCSSCSHHHHHHHHHHHHTTCCGGGSEE
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99999999999861878979889988256889999999999899745560529854565387899887762457023579


Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEE
Q ss_conf             00000122566667788999999999998632297679952559999984465331011065057664289737899970
Q gi|254780743|r  153 SMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATV  232 (261)
Q Consensus       153 tn~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~  232 (261)
                      ||++||+||+||.|+..|++.|++||.+||++++|++||+||+.|.++++.....++.+.||+|+++.   .+++++|||
T Consensus        96 tn~vkc~pp~n~~~~~~e~~~c~~~l~~eI~li~PkiIv~LG~~a~~~ll~~~~~~i~~~rG~~~~~~---~~~~~~pt~  172 (204)
T 1vk2_A           96 CNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPIDWL---GGKKVIPTF  172 (204)
T ss_dssp             EESCSSCCGGGCCCCHHHHHHHHHHHHHHHHHHCCSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECG---GGCEEEEEC
T ss_pred             EEEEEECCCCCCCCCHHHHHHCCCHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEECC---CCCEEEEEE
T ss_conf             76787608867899989998847467777631486479715899999997267766420369558867---998799981


Q ss_pred             CHHHHHCCH--HHHHHHHHHHHHHHHHHHC
Q ss_conf             803883365--9899999999999999860
Q gi|254780743|r  233 HPQELIQYP--LIKKNTWHALITLKKALKN  260 (261)
Q Consensus       233 HPs~LLr~P--~~K~~aW~DL~~l~~~L~~  260 (261)
                      |||||+|||  ..|+.+|+||+++++.|++
T Consensus       173 HPs~llrnp~~~~k~~~~~Dl~~ik~~l~~  202 (204)
T 1vk2_A          173 HPSYLLRNRSNELRRIVLEDIEKAKSFIKK  202 (204)
T ss_dssp             CHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred             CCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             965987793888899999999999999985