HHsearch results for GI: 254780743 and protein with PDBid: 1vk2_A
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=100.00 E-value=0 Score=358.57 Aligned_cols=185 Identities=19% Similarity=0.387 Sum_probs=174.7
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCE
Q ss_conf 46998999999960038852002877223678888848998578983001120012070048999999860986222100
Q gi|254780743|r 73 KACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHI 152 (261)
Q Consensus 73 ~~~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyi 152 (261)
....++.|++.+.+|+.|+|+.+++++|+|.|+++|+||||||+||.+|+++|+||+|+||++|++||.++|+++++||+
T Consensus 16 ~~~~l~~L~~~i~~C~~C~L~~~~~~~V~g~G~~~a~imiVgeaPg~~e~~~g~pf~g~sG~ll~~~l~~~gl~~~~vyi 95 (204)
T 1vk2_A 16 REELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYI 95 (204)
T ss_dssp HHHHHHHHHHHHHHCCSSGGGGTCSSCCCCEECTTCSEEEEESCCCHHHHHHTCSSCSHHHHHHHHHHHHTTCCGGGSEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999999999861878979889988256889999999999899745560529854565387899887762457023579
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEE
Q ss_conf 00000122566667788999999999998632297679952559999984465331011065057664289737899970
Q gi|254780743|r 153 SMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATV 232 (261)
Q Consensus 153 tn~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~ 232 (261)
||++||+||+||.|+..|++.|++||.+||++++|++||+||+.|.++++.....++.+.||+|+++. .+++++|||
T Consensus 96 tn~vkc~pp~n~~~~~~e~~~c~~~l~~eI~li~PkiIv~LG~~a~~~ll~~~~~~i~~~rG~~~~~~---~~~~~~pt~ 172 (204)
T 1vk2_A 96 CNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPIDWL---GGKKVIPTF 172 (204)
T ss_dssp EESCSSCCGGGCCCCHHHHHHHHHHHHHHHHHHCCSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECG---GGCEEEEEC
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCEEECC---CCCEEEEEE
T ss_conf 76787608867899989998847467777631486479715899999997267766420369558867---998799981
Q ss_pred CHHHHHCCH--HHHHHHHHHHHHHHHHHHC
Q ss_conf 803883365--9899999999999999860
Q gi|254780743|r 233 HPQELIQYP--LIKKNTWHALITLKKALKN 260 (261)
Q Consensus 233 HPs~LLr~P--~~K~~aW~DL~~l~~~L~~ 260 (261)
|||||+||| ..|+.+|+||+++++.|++
T Consensus 173 HPs~llrnp~~~~k~~~~~Dl~~ik~~l~~ 202 (204)
T 1vk2_A 173 HPSYLLRNRSNELRRIVLEDIEKAKSFIKK 202 (204)
T ss_dssp CHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 965987793888899999999999999985