HHsearch results for GI: 254780743 and protein with PDBid: 2d3y_A
>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus HB8} PDB: 2ddg_A* 2dem_A* 2dp6_A*
Probab=100.00 E-value=0 Score=314.21 Aligned_cols=183 Identities=13% Similarity=0.142 Sum_probs=145.9
Q ss_pred CCHHHHHHHHHCCCCCC-CCCCCCC----------------CCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCC-CCHHH
Q ss_conf 99899999996003885-2002877----------------2236788888489985789830011-2001207-00489
Q gi|254780743|r 75 CSLHELKSLLRSFHDCH-LCSTSLS----------------TICATQTEGQDLMIIGYTPSDSDNI-SGKPFSG-KTGNM 135 (261)
Q Consensus 75 ~~l~~L~~~~~~~~~C~-L~~~~~~----------------~v~g~G~~~a~imiVgeaPg~~Ed~-~G~pF~G-~aG~l 135 (261)
.++++|...+.+|+.|+ |+.++++ .|||+|+.+|+||||||+||++||. .|+||+| .+|++
T Consensus 1 ~d~~~l~~~i~~C~~Cp~L~~~r~~i~~~~~~~~~~~~~~~pV~G~G~~~A~imiIGeaPg~~ed~~~g~pf~g~~sG~l 80 (219)
T 2d3y_A 1 MDREAFVQTLTACRLCPRLVAWREEVVGRKRAFRGEPYWARPVPGFGDPEARILLFGLAPGAHGSNRTGRPFTGDASGAF 80 (219)
T ss_dssp CCHHHHHHHHTTCCCCHHHHHHHHHTTTTSGGGTTSCCCCSCCCCEECTTCSEEEEESCCCTTTHHHHSSTTTTSHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECHHHH
T ss_conf 98899988764275767899999999851244446434788428999999998999689873202326898433244989
Q ss_pred HHHHHHHCCCCCC------------CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHC
Q ss_conf 9999986098622------------2100000001225666677889999999999986322976799525599999844
Q gi|254780743|r 136 LDKMLQSIEIMRT------------QIHISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFN 203 (261)
Q Consensus 136 L~~mL~aigl~r~------------~vyitn~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~ 203 (261)
|++||.++|++++ ++|+||++|||||+||.|+.+|+..|.+|+.+++.+++|++||+||++|.+++++
T Consensus 81 L~~~l~~~gl~~~~~~~~~~~~~~~~~~~tn~vk~rpP~nrp~~~e~~~~~~~ll~e~~~lv~PkvIV~LG~~A~kall~ 160 (219)
T 2d3y_A 81 LYPLLHEAGLSSKPESLPGDDLRLYGVYLTAAVRCAPPKNKPTPEELRACARWTEVELGLLPEVRVYVALGRIALEALLA 160 (219)
T ss_dssp HHHHHHHTTCBSCSCCCTTSCCCBSSEEEEESCCSCCGGGCCCHHHHHHHHHHHHHHHHTCTTCCEEEEESHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
T ss_conf 99999998644642010133232101476165133598889985999985289999999861862132010999999987
Q ss_pred CCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 65331011065057664289737899970803883365989999999999999986
Q gi|254780743|r 204 NDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQYPLIKKNTWHALITLKKALK 259 (261)
Q Consensus 204 ~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr~P~~K~~aW~DL~~l~~~L~ 259 (261)
.........+++++.......++++||||||||++||+ |+.+|+|+..+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~v~ptyHPS~llr~~--~r~~~~~~~~~l~~a~ 214 (219)
T 2d3y_A 161 HFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQT--GRLTREMFLEVLMEAK 214 (219)
T ss_dssp HHTCCTTTSCCCTTCEEEETTTEEEEEECCCSHHHHHH--TSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCC--CHHHHHHHHHHHHHHH
T ss_conf 60776444433245267379991899996887545598--8023999999999999