HHSEARCH alignment of GI: 254780743 and SCOP domain: d1ui0a_

Alignment
>d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=370.85  Aligned_cols=181  Identities=29%  Similarity=0.552  Sum_probs=174.3

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             98999999960038852002877223678888848998578983001120012070048999999860986222100000
Q gi|254780743|r   76 SLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMI  155 (261)
Q Consensus        76 ~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyitn~  155 (261)
                      +|++|+..+.+|+.|+|+++++++|+|.|+.+|+||||||+||.+|+++|+||+|++|++|++||.++||++++|||||+
T Consensus         1 tl~~L~~~i~~C~~C~L~~~~~~~V~g~G~~~a~imiVgeaPg~~e~~~g~pf~G~aG~lL~~~l~~~gl~~~~vyitn~   80 (192)
T d1ui0a_           1 TLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITNI   80 (192)
T ss_dssp             CHHHHHHHHTTCCSSGGGTTCSSCCCCEECTTCSEEEEESCCCHHHHHHSCSSCSHHHHHHHHHHHHHTCCGGGSEEEES
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHEEEEEE
T ss_conf             98999999866888989889988471789999889999632455566453010022688999999971888889688602


Q ss_pred             EECCCCCCCCCCHHHHHHHH-HHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECH
Q ss_conf             00122566667788999999-99999863229767995255999998446533101106505766428973789997080
Q gi|254780743|r  156 SPWHPPGNRNLSNIEMEICR-PIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHP  234 (261)
Q Consensus       156 vkcrPp~nr~p~~~ei~~c~-p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HP  234 (261)
                      +||+||+++.|+..|+++|+ +||.+||++++|++||+||++|.+++++.. ..+.+.||+||++    .+++++|||||
T Consensus        81 vkc~p~~~~~~~~~e~~~C~~~~L~~ei~li~P~iii~lG~~a~~~~l~~~-~~~~~~rG~~~~~----~~~~~~~t~HP  155 (192)
T d1ui0a_          81 VKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEK-VSITKVRGKWYEW----HGIKVFPMFHP  155 (192)
T ss_dssp             CSSCCGGGCCCCHHHHHHHHHHTHHHHHHHHCCSEEEEBSHHHHHHHHTSC-CCHHHHTTCCEEE----TTEEECCBCCH
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCC-CCCHHCCCCEEEC----CCCEEEEECCC
T ss_conf             657134455678179999999999999974306599951310123320113-5301005825871----89779998094


Q ss_pred             HHHHCCHHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf             388336598-----999999999999998609
Q gi|254780743|r  235 QELIQYPLI-----KKNTWHALITLKKALKNL  261 (261)
Q Consensus       235 s~LLr~P~~-----K~~aW~DL~~l~~~L~~l  261 (261)
                      |||+|||+.     |+.+|+||+++|++|++|
T Consensus       156 s~llrnp~~~~~~~K~~~w~DL~~ik~~L~~l  187 (192)
T d1ui0a_         156 AYLLRNPSRAPGSPKHLTWLDIQEVKRALDAL  187 (192)
T ss_dssp             HHHHHSCCCSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             78766914223045789999999999999833


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Mug-like
domain: Thermophilic uracil-DNA glycosylase
species: Thermus thermophilus [TaxId: 274]