Query gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 261
No_of_seqs 186 out of 1458
Neff 6.3
Searched_HMMs 13730
Date Wed Jun 1 06:48:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780743.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ui0a_ c.18.1.2 (A:) Thermoph 100.0 0 0 370.9 15.3 181 76-261 1-187 (192)
2 d1vk2a_ c.18.1.2 (A:) Thermoph 100.0 0 0 357.6 15.7 184 74-260 5-190 (191)
3 d1muga_ c.18.1.2 (A:) G:T/U mi 99.9 1.2E-27 8.9E-32 175.0 12.9 141 105-253 7-161 (165)
4 d1oe4a_ c.18.1.3 (A:) Single-s 98.9 3E-09 2.2E-13 70.2 9.2 131 103-250 48-229 (245)
5 d2j8xa1 c.18.1.1 (A:26-255) Ur 73.0 2.7 0.00019 19.2 9.4 118 106-240 56-195 (230)
6 d3euga_ c.18.1.1 (A:) Uracil-D 71.5 2.9 0.00021 19.0 9.6 117 106-240 50-190 (225)
7 d1laue_ c.18.1.1 (E:) Uracil-D 56.0 5.7 0.00042 17.3 8.1 116 106-240 62-201 (228)
8 d1bqka_ b.6.1.1 (A:) Pseudoazu 52.5 3.9 0.00028 18.2 2.3 36 109-144 88-123 (124)
9 d1em8b_ c.126.1.1 (B:) DNA pol 52.5 6.6 0.00048 16.9 4.3 90 105-252 8-100 (110)
10 d2hxma1 c.18.1.1 (A:82-304) Ur 41.6 9.8 0.00071 15.9 9.4 115 106-239 54-193 (223)
11 d1yc5a1 c.31.1.5 (A:1-245) NAD 38.9 11 0.00079 15.7 3.9 10 186-195 180-189 (245)
12 d1mkza_ c.57.1.1 (A:) MoaB {Es 36.7 12 0.00086 15.5 5.1 68 108-197 11-78 (170)
No 1
>d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=370.85 Aligned_cols=181 Identities=29% Similarity=0.552 Sum_probs=174.3
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 98999999960038852002877223678888848998578983001120012070048999999860986222100000
Q gi|254780743|r 76 SLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMI 155 (261)
Q Consensus 76 ~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyitn~ 155 (261)
+|++|+..+.+|+.|+|+++++++|+|.|+.+|+||||||+||.+|+++|+||+|++|++|++||.++||++++|||||+
T Consensus 1 tl~~L~~~i~~C~~C~L~~~~~~~V~g~G~~~a~imiVgeaPg~~e~~~g~pf~G~aG~lL~~~l~~~gl~~~~vyitn~ 80 (192)
T d1ui0a_ 1 TLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITNI 80 (192)
T ss_dssp CHHHHHHHHTTCCSSGGGTTCSSCCCCEECTTCSEEEEESCCCHHHHHHSCSSCSHHHHHHHHHHHHHTCCGGGSEEEES
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHEEEEEE
T ss_conf 98999999866888989889988471789999889999632455566453010022688999999971888889688602
Q ss_pred EECCCCCCCCCCHHHHHHHH-HHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECH
Q ss_conf 00122566667788999999-99999863229767995255999998446533101106505766428973789997080
Q gi|254780743|r 156 SPWHPPGNRNLSNIEMEICR-PIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHP 234 (261)
Q Consensus 156 vkcrPp~nr~p~~~ei~~c~-p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HP 234 (261)
+||+||+++.|+..|+++|+ +||.+||++++|++||+||++|.+++++.. ..+.+.||+||++ .+++++|||||
T Consensus 81 vkc~p~~~~~~~~~e~~~C~~~~L~~ei~li~P~iii~lG~~a~~~~l~~~-~~~~~~rG~~~~~----~~~~~~~t~HP 155 (192)
T d1ui0a_ 81 VKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEK-VSITKVRGKWYEW----HGIKVFPMFHP 155 (192)
T ss_dssp CSSCCGGGCCCCHHHHHHHHHHTHHHHHHHHCCSEEEEBSHHHHHHHHTSC-CCHHHHTTCCEEE----TTEEECCBCCH
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCC-CCCHHCCCCEEEC----CCCEEEEECCC
T ss_conf 657134455678179999999999999974306599951310123320113-5301005825871----89779998094
Q ss_pred HHHHCCHHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf 388336598-----999999999999998609
Q gi|254780743|r 235 QELIQYPLI-----KKNTWHALITLKKALKNL 261 (261)
Q Consensus 235 s~LLr~P~~-----K~~aW~DL~~l~~~L~~l 261 (261)
|||+|||+. |+.+|+||+++|++|++|
T Consensus 156 s~llrnp~~~~~~~K~~~w~DL~~ik~~L~~l 187 (192)
T d1ui0a_ 156 AYLLRNPSRAPGSPKHLTWLDIQEVKRALDAL 187 (192)
T ss_dssp HHHHHSCCCSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 78766914223045789999999999999833
No 2
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=357.64 Aligned_cols=184 Identities=19% Similarity=0.385 Sum_probs=173.9
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 69989999999600388520028772236788888489985789830011200120700489999998609862221000
Q gi|254780743|r 74 ACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHIS 153 (261)
Q Consensus 74 ~~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyit 153 (261)
...+++|++.+.+|+.|+|+.+++++|+|.|+++|+||||||+||.+||++|+||+|+||++|++||.++|++++++|+|
T Consensus 5 ~~~l~~L~~~i~~C~~C~L~~~~~~~V~g~G~~~a~imiVgeaPg~~e~~~g~pf~g~aG~~L~~~l~~~gl~~~~~~it 84 (191)
T d1vk2a_ 5 EELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYIC 84 (191)
T ss_dssp HHHHHHHHHHHHHCCSSGGGGTCSSCCCCEECTTCSEEEEESCCCHHHHHHTCSSCSHHHHHHHHHHHHTTCCGGGSEEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999718789798799887579999986789996133566776476541778999999988632020472797
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 00001225666677889999999999986322976799525599999844653310110650576642897378999708
Q gi|254780743|r 154 MISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVH 233 (261)
Q Consensus 154 n~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~H 233 (261)
|+++|+||+||.|+..|++.|+|||.+||++++|++||+||++|++++++....++.+.||+|+++. .+++++||||
T Consensus 85 ~~~kc~pp~~~~p~~~ei~~C~p~L~~ei~~i~Pkiii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~---~~~~~~pt~H 161 (191)
T d1vk2a_ 85 NVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPIDWL---GGKKVIPTFH 161 (191)
T ss_dssp ESCSSCCGGGCCCCHHHHHHHHHHHHHHHHHHCCSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECG---GGCEEEEECC
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCCCEEECC---CCCEEEEEEC
T ss_conf 3331347643345558999999988888765203013432608999986035565332367158868---9987999849
Q ss_pred HHHHHCCH--HHHHHHHHHHHHHHHHHHC
Q ss_conf 03883365--9899999999999999860
Q gi|254780743|r 234 PQELIQYP--LIKKNTWHALITLKKALKN 260 (261)
Q Consensus 234 Ps~LLr~P--~~K~~aW~DL~~l~~~L~~ 260 (261)
||||+||| ..|+.+|+||+++++.|++
T Consensus 162 Ps~llr~p~~~~k~~~~~Dl~~~k~~l~~ 190 (191)
T d1vk2a_ 162 PSYLLRNRSNELRRIVLEDIEKAKSFIKK 190 (191)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 88986597788899999999999999824
No 3
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=1.2e-27 Score=175.02 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=119.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-------------CCCCEEEEEECCCCCCCCCCHHHH
Q ss_conf 8888489985789830011200120700489999998609862-------------221000000012256666778899
Q gi|254780743|r 105 TEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMR-------------TQIHISMISPWHPPGNRNLSNIEM 171 (261)
Q Consensus 105 ~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r-------------~~vyitn~vkcrPp~nr~p~~~ei 171 (261)
.++++|||||++||..++++|+||+| +|..|.++|..+|+.. ..+|+||+++|+++.++.|+.+|+
T Consensus 7 ~p~~~vlivG~~PG~~s~~~g~~f~~-p~n~fw~~l~~~g~~~~~~~~~~~~~l~~~~i~~~d~~~~~~~~~~~~s~~Ei 85 (165)
T d1muga_ 7 APGLRVVFCGINPGLSSAGTGFPFAH-PANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQEL 85 (165)
T ss_dssp CTTCSEEEEESSCCHHHHHHSSTTCS-TTCCHHHHHHHTTSSSSCCCGGGGGGGGGGTEEEEESCCCCCSSGGGSCHHHH
T ss_pred CCCCCEEEEECCCCHHHHHCCCCCCC-CHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHH
T ss_conf 99998899807989778855998268-48899999999737876677767644310446884376677888899999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHC-CHHHHHHHHHH
Q ss_conf 99999999986322976799525599999844653310110650576642897378999708038833-65989999999
Q gi|254780743|r 172 EICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQ-YPLIKKNTWHA 250 (261)
Q Consensus 172 ~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr-~P~~K~~aW~D 250 (261)
..|.+++.++|+.++|++|+++|+.|.+++++.... ..|..... ..++++++++|||.+.+ +.+.|..+|.+
T Consensus 86 ~~~~~~l~~~i~~~~Pkii~~~G~~a~~~~~~~~~~----~~g~q~~~---~~~~~~~vlPspSp~~~~~~~~~~~~w~e 158 (165)
T d1muga_ 86 HAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGA----QWGKQTLT---IGSTQIWVLPNPSGLSRVSLEKLVEAYRE 158 (165)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECHHHHHHHHTCCSC----CSEEEEEE---ETTEEEEEECCCSTTSCCCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCEEEECCHHHHHHHHCCCCC----CCCCCCCC---CCCCCEEEEECCCHHHHCCHHHHHHHHHH
T ss_conf 865500899999849948998287999998467764----44542322---49967899707986785899999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780743|r 251 LIT 253 (261)
Q Consensus 251 L~~ 253 (261)
|.+
T Consensus 159 l~~ 161 (165)
T d1muga_ 159 LDQ 161 (165)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 4
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=98.93 E-value=3e-09 Score=70.17 Aligned_cols=131 Identities=15% Similarity=0.287 Sum_probs=91.3
Q ss_pred CCCCCCCEEEEECCCCCCC-CCCCCCCCC-----------------------------------CCHHHHHHHHHHC-CC
Q ss_conf 7888884899857898300-112001207-----------------------------------0048999999860-98
Q gi|254780743|r 103 TQTEGQDLMIIGYTPSDSD-NISGKPFSG-----------------------------------KTGNMLDKMLQSI-EI 145 (261)
Q Consensus 103 ~G~~~a~imiVgeaPg~~E-d~~G~pF~G-----------------------------------~aG~lL~~mL~ai-gl 145 (261)
.++...+++|+|..||... -.+|.||.. .||+.|-.+++.. |-
T Consensus 48 y~~~~~~~l~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~I~~~v~~P~~~HPKRpi~Gl~~~r~EvSg~rlW~l~~~~~g~ 127 (245)
T d1oe4a_ 48 YCKSKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQ 127 (245)
T ss_dssp HCSSCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSS
T ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 73899978998328987767652868687799887754777557885337777655656665401798999999998299
Q ss_pred CC---CCCCEEEEEECCC----CCCCCCCHH-------HHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHH
Q ss_conf 62---2210000000122----566667788-------999999999998632297679952559999984465331011
Q gi|254780743|r 146 MR---TQIHISMISPWHP----PGNRNLSNI-------EMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQ 211 (261)
Q Consensus 146 ~r---~~vyitn~vkcrP----p~nr~p~~~-------ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~ 211 (261)
.. +++|+.|.++--+ -.|++|+.- -...|-.+|.+.|++.+|++||.+|+.|.+.+-. .+.
T Consensus 128 pe~ff~~~fv~N~CPL~f~~e~GkN~TP~~l~~~~~~~l~~~Cd~~L~~~v~~L~p~~VIgVG~~Ae~ra~~----al~- 202 (245)
T d1oe4a_ 128 PETFFKHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTLLEICDEALCQAVRVLGVKLVIGVGRFSEQRARK----ALM- 202 (245)
T ss_dssp HHHHHTTEEEEESCCCEEECTTCCEECGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHH----HHH-
T ss_pred HHHHHHHHHEEECCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH----HHH-
T ss_conf 899876550364178664588899898211578899999999999999999754960999837899999999----862-
Q ss_pred CCCEEEEEECCCCCEEEEEEECHHHHHCCHHHHHHHHHH
Q ss_conf 065057664289737899970803883365989999999
Q gi|254780743|r 212 NLGKWSNLCTPHSIIPTLATVHPQELIQYPLIKKNTWHA 250 (261)
Q Consensus 212 ~rG~~~~~~~~~~~i~~~pt~HPs~LLr~P~~K~~aW~D 250 (261)
.. +..+++....|||- ++|...|. |..
T Consensus 203 ~~---------g~~v~v~~i~HPSP--asp~aN~~-W~e 229 (245)
T d1oe4a_ 203 AE---------GIDVTVKGIMHPSP--RNPQANKG-WEG 229 (245)
T ss_dssp HT---------TCSCEEEEECCCCT--TCGGGTTT-HHH
T ss_pred CC---------CCCCEEEECCCCCC--CCHHCCCC-CHH
T ss_conf 36---------99845864789999--88000058-489
No 5
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]}
Probab=72.96 E-value=2.7 Score=19.16 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCH----HHHHHHHHHC-----CCC-----------CCCCCEEEEEECCCCCCCC
Q ss_conf 8884899857898300112001207004----8999999860-----986-----------2221000000012256666
Q gi|254780743|r 106 EGQDLMIIGYTPSDSDNISGKPFSGKTG----NMLDKMLQSI-----EIM-----------RTQIHISMISPWHPPGNRN 165 (261)
Q Consensus 106 ~~a~imiVgeaPg~~Ed~~G~pF~G~aG----~lL~~mL~ai-----gl~-----------r~~vyitn~vkcrPp~nr~ 165 (261)
.+-||+|||+-|--.++..|..|+=+.| .=|.+|+..+ +.. ++.|.+-|.+----.|...
T Consensus 56 ~~vKVVIlGQDPY~~~~A~GLaFSv~~~~~~PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLN~~LTv~~g~~~ 135 (230)
T d2j8xa1 56 SDIKVVILGQDPYHGGQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPG 135 (230)
T ss_dssp GGCCEEEEECSCCSSSCCCSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTT
T ss_pred HHEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCC
T ss_conf 68379998536787875214432046789789429999999986457888777898689963887766303677479999
Q ss_pred -CCHHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHCC
Q ss_conf -77889999999999986322-9767995255999998446533101106505766428973789997080388336
Q gi|254780743|r 166 -LSNIEMEICRPIIMRQIELI-SPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY 240 (261)
Q Consensus 166 -p~~~ei~~c~p~L~~ei~li-~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr~ 240 (261)
-....-+.+...+.+.|..- ++-+.++.|+.|.+.. ..+.. ....++-+.|||.|-.+
T Consensus 136 SH~~~gWe~ft~~~i~~l~~~~~~vVfiLWG~~A~~~~-----~~i~~------------~~h~Il~s~HPSPls~~ 195 (230)
T d2j8xa1 136 SHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKA-----SLINS------------KKHLVLTSQHPSPLAQN 195 (230)
T ss_dssp TTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHGGG-----GGSCT------------TTSEEEEECCSSGGGGG
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-----HHCCC------------CCCEEEECCCCCCCCCC
T ss_conf 83334748899999999972778879984014466666-----53157------------78769967899942246
No 6
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]}
Probab=71.45 E-value=2.9 Score=18.96 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=65.0
Q ss_pred CCCCEEEEECCCCCC-CCCCCCCCCCCCHH----HHHHHHHHC-----CCC-----------CCCCCEEEEEECCCCCCC
Q ss_conf 888489985789830-01120012070048----999999860-----986-----------222100000001225666
Q gi|254780743|r 106 EGQDLMIIGYTPSDS-DNISGKPFSGKTGN----MLDKMLQSI-----EIM-----------RTQIHISMISPWHPPGNR 164 (261)
Q Consensus 106 ~~a~imiVgeaPg~~-Ed~~G~pF~G~aG~----lL~~mL~ai-----gl~-----------r~~vyitn~vkcrPp~nr 164 (261)
.+-||+|||+-|--. .+..|..|.-+.|. =|.+++..+ |.. ++.|.+-|.+-.--.|..
T Consensus 50 ~~vKVVIlGQDPYh~~~~A~GLaFsv~~~~~~PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLN~~LTv~~g~~ 129 (225)
T d3euga_ 50 GDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQA 129 (225)
T ss_dssp GGCCEEEEESSCCCSTTTCSSSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSCCCCHHHHTTTEEEEESSCCEETTBT
T ss_pred HHCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEEEEEEEECCCC
T ss_conf 57569999657887555113641331589888834999999999863898789998520354176577743599985756
Q ss_pred CCCHHH--HHHHHHHHHHHHHH-CCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHCC
Q ss_conf 677889--99999999998632-29767995255999998446533101106505766428973789997080388336
Q gi|254780743|r 165 NLSNIE--MEICRPIIMRQIEL-ISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY 240 (261)
Q Consensus 165 ~p~~~e--i~~c~p~L~~ei~l-i~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr~ 240 (261)
. +... -+.+...+.+.|.- .++-+.++.|+.|.+. . . .|...+ .-++-+.|||.|-.+
T Consensus 130 ~-SH~~~GWe~ft~~ii~~l~~~~~~vvfiLwG~~A~~~-~-~---~i~~~~------------h~il~s~HPSPlsa~ 190 (225)
T d3euga_ 130 H-SHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKK-G-A---IIDKQR------------HHVLKAPHPSPLSAH 190 (225)
T ss_dssp T-TTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHHH-T-T---TSCTTT------------SEEEEECCSSTTTGG
T ss_pred C-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHH-H-H---HHCCCC------------CEEEEECCCCHHHCC
T ss_conf 6-6211158999999999997367785999861306677-7-6---515678------------769982799822148
No 7
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]}
Probab=55.98 E-value=5.7 Score=17.25 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCCEEEEECCCCCC-CCCCCCCCCCCCHH----HHHHHHHHCC-----CC-----------CCCCCEEEEEECCCCCCC
Q ss_conf 888489985789830-01120012070048----9999998609-----86-----------222100000001225666
Q gi|254780743|r 106 EGQDLMIIGYTPSDS-DNISGKPFSGKTGN----MLDKMLQSIE-----IM-----------RTQIHISMISPWHPPGNR 164 (261)
Q Consensus 106 ~~a~imiVgeaPg~~-Ed~~G~pF~G~aG~----lL~~mL~aig-----l~-----------r~~vyitn~vkcrPp~nr 164 (261)
.+-||+|+|+-|--. ....|..|.-..|. =|.+|+.++. .. ++.|.+-|.+----.|..
T Consensus 62 ~~vKVVIlGQDPYh~~~~A~GLaFsv~~~~~~ppSLrNI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~ 141 (228)
T d1laue_ 62 DEVRVVIIGQDPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAA 141 (228)
T ss_dssp GGCCEEEEECSCCCSTTTCCSSSSCCCTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHTTEEEEESSCCEETTBT
T ss_pred HHCEEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEEEEEEECCCC
T ss_conf 36359999614887664131131235888465067899999988644777678766543433287899960278877975
Q ss_pred CCCHHH--HHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHCC
Q ss_conf 677889--999999999986322-9767995255999998446533101106505766428973789997080388336
Q gi|254780743|r 165 NLSNIE--MEICRPIIMRQIELI-SPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY 240 (261)
Q Consensus 165 ~p~~~e--i~~c~p~L~~ei~li-~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr~ 240 (261)
. +... -+.+...+.+.|.-- ++-+.++.|+.|.+. .. . +.+ + -.++-+.|||-|-++
T Consensus 142 ~-SH~~~gWe~ft~~ii~~l~~~~~~vVfiLWG~~Aq~~-~~-~---~~~-~------------h~il~~~HPSPlsa~ 201 (228)
T d1laue_ 142 A-SHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNA-IR-P---DPR-V------------HCVLKFSHPSPLSKV 201 (228)
T ss_dssp T-TTTTSSHHHHHHHHHHHHHHHCTTCEEEEESHHHHHH-CC-C---CTT-T------------SEEEEECCCSTTSSS
T ss_pred C-CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HH-C---CCC-C------------CEEEEECCCCHHHCC
T ss_conf 6-7655439999999999997588882899731157777-54-4---799-9------------859997899824316
No 8
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}
Probab=52.51 E-value=3.9 Score=18.23 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=31.4
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 489985789830011200120700489999998609
Q gi|254780743|r 109 DLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIE 144 (261)
Q Consensus 109 ~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aig 144 (261)
-.++||+.|.-.|........+.+-..|.++++.+|
T Consensus 88 G~IvVgd~~~n~~~~~~~~~~~~s~~~~~~~~~~~~ 123 (124)
T d1bqka_ 88 GVVQVGDAPANLEAVKGAKNPKKAQERLDAALAALG 123 (124)
T ss_dssp EEEEESSSCTTHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999788999665460778999999999841
No 9
>d1em8b_ c.126.1.1 (B:) DNA polymerase III psi subunit {Escherichia coli [TaxId: 562]}
Probab=52.45 E-value=6.6 Score=16.92 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=53.7
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88884899857898300112001207004899999986098622210000000122566667788999999999998632
Q gi|254780743|r 105 TEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMRQIEL 184 (261)
Q Consensus 105 ~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyitn~vkcrPp~nr~p~~~ei~~c~p~L~~ei~l 184 (261)
+.+-|++||.+.+-.. .+ .||.++|++++|+.+++|..+ |. +++.
T Consensus 8 p~~~rLliVa~~~p~~----------~~-~L~~dILrsm~L~~~q~~~lt-----------~e-------------ql~~ 52 (110)
T d1em8b_ 8 PAHVRLVMVANDLPAL----------TD-PLVSDVLRALTVSPDQVLQLT-----------PE-------------KIAM 52 (110)
T ss_dssp CTTCCEEEECSSCCCT----------TS-HHHHHHHHHTTCCGGGEEEEC-----------TT-------------GGGG
T ss_pred CHHCEEEEECCCCCCC----------CC-HHHHHHHHHCCCCHHHEEEEC-----------HH-------------HHHH
T ss_conf 2404699980898774----------46-289999998589999953348-----------99-------------9962
Q ss_pred C---CCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHCCHHHHHHHHHHHH
Q ss_conf 2---9767995255999998446533101106505766428973789997080388336598999999999
Q gi|254780743|r 185 I---SPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQYPLIKKNTWHALI 252 (261)
Q Consensus 185 i---~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr~P~~K~~aW~DL~ 252 (261)
+ .+-.+=.+|. + ... ..-|+ .+-+-.-+-|..|+..||.-|+-..
T Consensus 53 L~~~~~~~~W~lG~---------~-~~~-~~~~~------------~l~SP~L~~L~~n~~aKRaLWqQIc 100 (110)
T d1em8b_ 53 LPQGSHCNSWRLGT---------D-EPL-SLEGA------------QVASPALTDLRANPTARAALWQQIC 100 (110)
T ss_dssp SCTTCBCEEEEESC---------C-SCC-SSBSC------------EEEECCHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCCCCCEEECCC---------C-CCC-CCCCC------------EEECCCHHHHHCCHHHHHHHHHHHH
T ss_conf 77788873577256---------6-675-32576------------7808359988539799999999998
No 10
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.61 E-value=9.8 Score=15.93 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCCCEEEEECCCCCC-CCCCCCCCCCCCHH----HHHHHHHHCC-----CC-----------CCCCCEEEEEECCCCCCC
Q ss_conf 888489985789830-01120012070048----9999998609-----86-----------222100000001225666
Q gi|254780743|r 106 EGQDLMIIGYTPSDS-DNISGKPFSGKTGN----MLDKMLQSIE-----IM-----------RTQIHISMISPWHPPGNR 164 (261)
Q Consensus 106 ~~a~imiVgeaPg~~-Ed~~G~pF~G~aG~----lL~~mL~aig-----l~-----------r~~vyitn~vkcrPp~nr 164 (261)
.+-||+|+|+-|--. ....|..|.-..|. -|.+++..+. .. .+.|.+-|.+----.|.
T Consensus 54 ~~vKVVIlGQDPY~~~~~A~GlaFSv~~~~~~ppSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~- 132 (223)
T d2hxma1 54 KDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQ- 132 (223)
T ss_dssp GGCCEEEEECSCCCSTTTCCSSTTCCCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCTHHHHHTTEEEEESSCCEETTB-
T ss_pred HHCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCEEEECCC-
T ss_conf 5746999952687667851003310368855684199999999876356878886613544207768886516787540-
Q ss_pred CCCHHHHHHHHHHHH---HHHHH-CCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHC
Q ss_conf 677889999999999---98632-2976799525599999844653310110650576642897378999708038833
Q gi|254780743|r 165 NLSNIEMEICRPIIM---RQIEL-ISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQ 239 (261)
Q Consensus 165 ~p~~~ei~~c~p~L~---~ei~l-i~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr 239 (261)
|..-.-....+|.. +.|.- -++-+.++.|+.|.+. .. .|...+ ..++-+.|||.|-.
T Consensus 133 -~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLWG~~A~~~-~~----~i~~~~------------h~il~~~HPSPls~ 193 (223)
T d2hxma1 133 -ANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKK-GS----AIDRKR------------HHVLQTAHPSPLSV 193 (223)
T ss_dssp -TTTTTTSSHHHHHHHHHHHHHHHCCSCEEEEESHHHHHH-TT----TSCTTT------------SEEEEECCCSTTTG
T ss_pred -CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHH-HH----HHCCCC------------CEEEEECCCCCCCC
T ss_conf -247402689999999999986546783998732327899-88----625689------------87998279972110
No 11
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]}
Probab=38.85 E-value=11 Score=15.68 Aligned_cols=10 Identities=10% Similarity=0.634 Sum_probs=7.9
Q ss_pred CCCEEEEECH
Q ss_conf 9767995255
Q gi|254780743|r 186 SPKILLFIGN 195 (261)
Q Consensus 186 ~Pk~ii~lG~ 195 (261)
+..++|.+|.
T Consensus 180 ~~DlllviGT 189 (245)
T d1yc5a1 180 RASLMIVLGS 189 (245)
T ss_dssp HCSEEEEESC
T ss_pred CCCEEEEECC
T ss_conf 3988999799
No 12
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Probab=36.68 E-value=12 Score=15.48 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=41.3
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 84899857898300112001207004899999986098622210000000122566667788999999999998632297
Q gi|254780743|r 108 QDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISP 187 (261)
Q Consensus 108 a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyitn~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li~P 187 (261)
.-|+.||+..|..+| .+|.+|..+|...|..-.+..+ + ..+.+++. .-+......-+.
T Consensus 11 vaiitvsD~~g~~~D--------~nGp~L~~~l~~~G~~v~~~~i---v--------~Dd~~~~~---~~l~~~~~~~~~ 68 (170)
T d1mkza_ 11 IAILTVSNRRGEEDD--------TSGHYLRDSAQEAGHHVVDKAI---V--------KENRYAIR---AQVSAWIASDDV 68 (170)
T ss_dssp EEEEEECSSCCGGGC--------HHHHHHHHHHHHTTCEEEEEEE---E--------CSCHHHHH---HHHHHHHHSSSC
T ss_pred EEEEEECCCCCCCCC--------CHHHHHHHHHHHCCCEEEEEEE---E--------CCCHHHHH---HHHHHHHHCCCC
T ss_conf 999997288986777--------7699999999987997877555---1--------78779999---999765530564
Q ss_pred CEEEEECHHH
Q ss_conf 6799525599
Q gi|254780743|r 188 KILLFIGNKT 197 (261)
Q Consensus 188 k~ii~lG~~a 197 (261)
.+||+-|.+.
T Consensus 69 dlIiTtGGtg 78 (170)
T d1mkza_ 69 QVVLITGGTG 78 (170)
T ss_dssp CEEEEESCCS
T ss_pred EEEEEEEEEC
T ss_conf 4888840003
Done!