RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780743|ref|YP_003065156.1| putative uracil-DNA
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
         (261 letters)



>gnl|CDD|31761 COG1573, COG1573, Uracil-DNA glycosylase [DNA replication,
           recombination, and repair].
          Length = 202

 Score =  101 bits (253), Expect = 2e-22
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 8/199 (4%)

Query: 71  AQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSG 130
           A+ A  L EL+  + +   C L       +         ++I+G  P   ++ +G+PF G
Sbjct: 4   AEAAELLEELREEIEACRRCPLLKDRTPVVPGGGNPTARILIVGEAPGAGEDRTGRPFVG 63

Query: 131 KTGNMLDKMLQSIEIMRTQ-IHISMISPW-HPPGNR---NLSNIEMEICRPIIMRQIELI 185
           K G++LD++L +I  +R + ++I+ +    +PPGNR   + +  E++ CRP +  +I LI
Sbjct: 64  KAGDLLDRILGAIGGLRYEDVYITNVVKCRYPPGNRPPGDPTPEEIKACRPFLEAEIALI 123

Query: 186 SPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCT-PHSIIPTLATVHPQELIQYPL-- 242
            PK++L +G            +   +  G+W          I    T HP  L + P   
Sbjct: 124 RPKVILLLGEYAAKSLLGLKGEPITELRGRWGAYRPKGGGGIRVFPTYHPSPLNRNPGKL 183

Query: 243 IKKNTWHALITLKKALKNL 261
            K   W  L  LK  L+ L
Sbjct: 184 NKWFFWEDLKKLKALLRQL 202


>gnl|CDD|146005 pfam03167, UDG, Uracil DNA glycosylase superfamily. 
          Length = 147

 Score = 94.3 bits (235), Expect = 3e-20
 Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 109 DLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSN 168
            ++I+G  P   ++ +G PF+G+ GN+L ++L    + R  ++++ +     P  R  + 
Sbjct: 9   KVLIVGEAPGPGEDATGLPFAGRAGNLLWRILAEAGLAREGVYLTNVVKCPRPVGRKPTR 68

Query: 169 IEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPT 228
            E+  C P ++ ++ L+ PK+++ +G      F     +++    G           IP 
Sbjct: 69  SEIAACWPYLLEELALLRPKVVVLLGKTAAKAFLGLGKKESLFEGGG----------IPV 118

Query: 229 LATVHP 234
           L   HP
Sbjct: 119 LPLPHP 124


>gnl|CDD|39323 KOG4120, KOG4120, KOG4120, G/T mismatch-specific thymine DNA
           glycosylase [Replication, recombination and repair].
          Length = 426

 Score = 27.8 bits (61), Expect = 3.0
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 105 TEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQ-------------IH 151
            E  D++I+G  P  +    G  ++G  GN   K L    ++  Q             I 
Sbjct: 146 CENLDIVIVGINPGLTAAYKGHHYAGP-GNHFWKCLNKSGLLEAQFTYLNDHDLPKHGIG 204

Query: 152 ISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIG 194
            + +      G+ +L   EM+    I+  +++   P++ +F G
Sbjct: 205 FTNMVARPTSGSADLRKKEMQEGARILYEKLQRYRPQVAVFNG 247


>gnl|CDD|163644 cd07401, MPP_TMEM62_N, Homo sapiens TMEM62, N-terminal
           metallophosphatase domain.  TMEM62 (transmembrane
           protein 62) is an uncharacterized Homo sapiens
           transmembrane protein with an N-terminal
           metallophosphatase domain.  TMEM62 belongs to the
           metallophosphatase (MPP) superfamily.  MPPs are
           functionally diverse, but all share a conserved domain
           with an active site consisting of two metal ions
           (usually manganese, iron, or zinc) coordinated with
           octahedral geometry by a cage of histidine, aspartate,
           and asparagine residues. The MPP superfamily includes:
           Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
           debranching enzymes, YfcE-like phosphodiesterases,
           purple acid phosphatases (PAPs), YbbF-like
           UDP-2,3-diacylglucosamine hydrolases, and acid
           sphingomyelinases (ASMases).  The conserved domain is a
           double beta-sheet sandwich with a di-metal active site
           made up of residues located at the C-terminal side of
           the sheets. This domain is thought to allow for
           productive metal coordination.
          Length = 256

 Score = 27.3 bits (61), Expect = 4.4
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 148 TQIHISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNN 204
           + IH+S    +HPP                    I++I P ++L  G+ T N   N 
Sbjct: 6   SDIHVS---SFHPPNRAQDETFCSNF--------IDVIKPALVLATGDLTDNKTGNK 51


>gnl|CDD|38559 KOG3349, KOG3349, KOG3349, Predicted glycosyltransferase [General
           function prediction only].
          Length = 170

 Score = 27.2 bits (60), Expect = 4.7
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 220 CTPHSIIPTLATVHPQELIQYPLIKKNTWHALI 252
           CTP ++   LA +  + L  +P      +   +
Sbjct: 132 CTPSTLPAGLAKLDLESLKPFPPSDPENFSKFL 164


>gnl|CDD|36410 KOG1196, KOG1196, KOG1196, Predicted NAD-dependent oxidoreductase
           [General function prediction only].
          Length = 343

 Score = 27.1 bits (60), Expect = 4.8
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 13/71 (18%)

Query: 133 GNMLDKMLQSIEIMRTQIHI---SMISPWH---PPGNRNLSNI---EMEICRPIIMRQIE 183
           G MLD +L +   M     I    MIS ++   P G  NLS I    + I   ++   ++
Sbjct: 233 GKMLDAVLLN---MNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLD 289

Query: 184 LISPKILLFIG 194
              PK L F+ 
Sbjct: 290 KY-PKFLDFLL 299


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,081,520
Number of extensions: 152839
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 14
Length of query: 261
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,275,709
Effective search space: 722594821
Effective search space used: 722594821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)