RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780743|ref|YP_003065156.1| putative uracil-DNA
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
         (261 letters)



>d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus
           thermophilus [TaxId: 274]}
          Length = 192

 Score = 78.3 bits (192), Expect = 6e-16
 Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 11/192 (5%)

Query: 76  SLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNM 135
           +L  L++  ++   C L       +         LMI+G  P + ++ +G+PF GK G +
Sbjct: 1   TLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQL 60

Query: 136 LDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICR-PIIMRQIELISPKILLFIG 194
           L+++L++  I R +++I+ I    PP NR     E +IC    +++QIELI+P+I++ +G
Sbjct: 61  LNRILEAAGIPREEVYITNIVKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLG 120

Query: 195 NKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQYP-----LIKKNTWH 249
                FF       T    GKW         I      HP  L++ P       K  TW 
Sbjct: 121 AVAAEFFLGEKVSITKVR-GKWYEWHG----IKVFPMFHPAYLLRNPSRAPGSPKHLTWL 175

Query: 250 ALITLKKALKNL 261
            +  +K+AL  L
Sbjct: 176 DIQEVKRALDAL 187


>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 191

 Score = 74.6 bits (182), Expect = 7e-15
 Identities = 35/190 (18%), Positives = 79/190 (41%), Gaps = 5/190 (2%)

Query: 73  KACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKT 132
           +   +  +   ++    C L     + +         ++ +G  P + ++ +G+PF G+ 
Sbjct: 4   REELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRA 63

Query: 133 GNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLF 192
           G +L ++L+   I R  ++I  +    PP NR  +  E   C   ++ QIE+I+P +++ 
Sbjct: 64  GMLLTELLRESGIRREDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVA 123

Query: 193 IGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQYP--LIKKNTWHA 250
           +G    +FF +       +  G   +          + T HP  L++     +++     
Sbjct: 124 LGATALSFFVDGKKVSITKVRGNPIDW---LGGKKVIPTFHPSYLLRNRSNELRRIVLED 180

Query: 251 LITLKKALKN 260
           +   K  +K 
Sbjct: 181 IEKAKSFIKK 190


>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug
           {Escherichia coli [TaxId: 562]}
          Length = 165

 Score = 72.0 bits (176), Expect = 4e-14
 Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 25/168 (14%)

Query: 105 TEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEI-------------MRTQIH 151
             G  ++  G  P  S   +G PF+    N   K++                  +  +  
Sbjct: 7   APGLRVVFCGINPGLSSAGTGFPFAHP-ANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCG 65

Query: 152 ISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQ 211
           ++ +          +S  E+      ++ +IE   P+ L  +G +     F+    +  +
Sbjct: 66  VTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGK 125

Query: 212 NLGKWSNLCTPHSIIPTLATVHPQELIQYPL-IKKNTWHALITLKKAL 258
                 +              +P  L +  L      +     L +AL
Sbjct: 126 QTLTIGS-------TQIWVLPNPSGLSRVSLEKLVEAYRE---LDQAL 163


>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 196

 Score = 25.8 bits (56), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 50  IQPITNIRHIHSPLVQQADSIAQKACSLHELKSLLRSFHDCHL 92
           I+ I ++  +  PL    +    +A  L E  S+LRS + CHL
Sbjct: 91  IRVIPDVYGVAVPLTPAVNPSTNRAVDLTE--SILRSAYHCHL 131


>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 192

 Score = 25.4 bits (55), Expect = 4.6
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 50  IQPITNIRHIHSPLVQQADSIAQKACSLHELKSLLRSFHDCHL 92
           I+ I ++ +    +    +    ++  L    S+LRS    H 
Sbjct: 91  IRLIADVAYTPMRVFPALNPETNESFDLSY--SVLRSVSPIHC 131


>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase
           {Ralstonia eutropha [TaxId: 106590]}
          Length = 280

 Score = 25.6 bits (55), Expect = 4.8
 Identities = 13/134 (9%), Positives = 32/134 (23%), Gaps = 7/134 (5%)

Query: 48  SAIQPITNIRHIHSPLVQQADSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEG 107
           +  +    I   + P        A         +     +H       + +         
Sbjct: 123 TVAEVQRRINRYYRPYHA-----ALTEAVEGAYQRFGAVWHLNLHSMPNNAYERLKIQSP 177

Query: 108 QDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLS 167
           + L        D D  + +P          +                +           +
Sbjct: 178 RPLADFVL--GDRDGTTCEPGLVDLVERELREKGYTVARNDPYKGVQLIAQIGRPAERRN 235

Query: 168 NIEMEICRPIIMRQ 181
           ++++EI RP+ M +
Sbjct: 236 SLQIEIRRPLYMEE 249


>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 296

 Score = 25.2 bits (54), Expect = 5.5
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 76  SLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNM 135
               +++ L++    +   T L +I  +  +G++L ++       ++  G P      NM
Sbjct: 7   RQEGMEAFLKTVAQNYSSVTHLHSIGKS-VKGRNLWVLVVGRFPKEHRIGIPEFKYVANM 65

Query: 136 LDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPII 178
                   E++   I   + S    P   NL N       P +
Sbjct: 66  HGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSM 108


>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 354

 Score = 24.7 bits (53), Expect = 7.2
 Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 111 MIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQ-IHISMISPWHPPGNRNLSNI 169
           +      +   ++ G+P            ++ ++      +    ++  + P    LS  
Sbjct: 108 LKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGY 167

Query: 170 EMEICRPIIMRQIELI 185
             +        Q + I
Sbjct: 168 PFQCLGFTPEHQRDFI 183


>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 245

 Score = 24.7 bits (53), Expect = 8.1
 Identities = 7/40 (17%), Positives = 11/40 (27%)

Query: 191 LFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLA 230
           + +   T+       A K Y  L           II  + 
Sbjct: 87  VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMK 126


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 943,106
Number of extensions: 41073
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 16
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)