BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780743|ref|YP_003065156.1| putative uracil-DNA
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
(261 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 261
Score = 541 bits (1394), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MTSKRILSQEQILTIALFYADSGVYWVFDEPNNEATYESQRKEKSIDSAIQPITNIRHIH 60
MTSKRILSQEQILTIALFYADSGVYWVFDEPNNEATYESQRKEKSIDSAIQPITNIRHIH
Sbjct: 1 MTSKRILSQEQILTIALFYADSGVYWVFDEPNNEATYESQRKEKSIDSAIQPITNIRHIH 60
Query: 61 SPLVQQADSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDS 120
SPLVQQADSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDS
Sbjct: 61 SPLVQQADSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDS 120
Query: 121 DNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMR 180
DNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMR
Sbjct: 121 DNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMR 180
Query: 181 QIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY 240
QIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY
Sbjct: 181 QIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY 240
Query: 241 PLIKKNTWHALITLKKALKNL 261
PLIKKNTWHALITLKKALKNL
Sbjct: 241 PLIKKNTWHALITLKKALKNL 261
>gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 263
Score = 26.6 bits (57), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 74 ACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMII 113
A S+ +L +LRS D + S+ S + Q EG+++ II
Sbjct: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 25.4 bits (54), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 145 IMRTQIHISMISPWHPPGNRNLS 167
++++QI I +PW PGNR ++
Sbjct: 231 LIKSQIVIWTTTPWTIPGNRAIA 253
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 24.6 bits (52), Expect = 1.6, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 27 VFDEPNNEATYESQRKEKSIDSAIQPITN 55
+F EP++ ATY Q +E ++ A+ I++
Sbjct: 114 LFSEPDSHATYFLQEQEMTLYDAVNFISH 142
>gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 232
Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 177 IIMRQIELISP-KILLFIGNKTKNFFFNN 204
II+ Q L +P K L+++G K +NF F +
Sbjct: 105 IIVEQKVLFTPQKPLIYLGGKPRNFHFED 133
>gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 207
Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 7 LSQEQILTI--ALFYADSGVYWVFDEPNNEATYESQ 40
L +E +L I A F SG W+ D +NE T +++
Sbjct: 172 LEKEHMLQIHGAWFDISSGKLWILDPTSNEFTCDTR 207
>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
asiaticus str. psy62]
Length = 480
Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 33 NEATYESQRKEKSIDSAIQ-PITNIRHIHSPLVQQADSIAQKACSLHELKSLL 84
N + E Q+ D I+ I+N+R S L D+I K S H+ L
Sbjct: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191
>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 562
Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 93 CSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHI 152
CS+++ T+ + +G +++G+ D + + GN++ +R +I++
Sbjct: 66 CSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNII--------AVRDKINL 117
Query: 153 SMISPWHPPGNRNLSNIEMEICRPIIMRQIEL 184
S +H + I PI+ R I L
Sbjct: 118 PNYSEFH----EKRTFISGYSNDPIVFRDIRL 145
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 23.5 bits (49), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 185 ISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLAT 231
+S + I NK +NF ++ ++K + + LCT +I L T
Sbjct: 1 MSENMSFIISNKNENFLLSDWSKKKMKIVAGLILLCTVFAITLALGT 47
>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 622
Score = 23.1 bits (48), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 26 WVFDEPNNEATYESQRKEKSIDSAIQPIT 54
W+ D P YE +EK ID A P T
Sbjct: 436 WIMDFP----FYEWNEEEKKIDFAHNPFT 460
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,946
Number of Sequences: 1233
Number of extensions: 6775
Number of successful extensions: 26
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 13
length of query: 261
length of database: 328,796
effective HSP length: 72
effective length of query: 189
effective length of database: 240,020
effective search space: 45363780
effective search space used: 45363780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)