RPSBLAST alignment for GI: 254780744 and conserved domain: TIGR01194

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555
 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 11/198 (5%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103
           +DL +  G+IV ++G NG GK+T   +  GL     G I +DG  ++       A     
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS-------ADSRDD 413

Query: 104 YLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE--FNITKWRHVLAPLLSG 161
           Y    ++IF    + ++++   E          + L  L       I          LS 
Sbjct: 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473

Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRDLASRGIGILITDHNVHE 220
           GQ++RL +  + +     +L DE  A  DP      +  L+ DL  +G  I+I  H+  +
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD-DQ 532

Query: 221 ILTLIDRAYIIHAGGVLA 238
              L D+   + AG ++ 
Sbjct: 533 YFELADQIIKLAAGCIVK 550