RPSBLAST alignment for GI: 254780744 and conserved domain: TIGR01257
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272
Score = 96.2 bits (239), Expect = 7e-21
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 12/232 (5%)
Query: 20 ASKDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77
+K +L LTK Y S V + + V+PGE GLLG NGAGKTT F M+TG
Sbjct: 1932 GNKTDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV 1991
Query: 78 DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137
SG + G I + + Y PQ +I LT E+ L +Y + + E
Sbjct: 1992 TSGDATVAGKSI--LTNISDVHQNMGYCPQFDAIDDLLTGREH----LYLYARLRGVPAE 2045
Query: 138 KLDSL----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
+++ + ++ ++ + LA SGG +R+L A +L+ P +LLDEP G+DP A
Sbjct: 2046 EIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105
Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ I + G +++T H++ E L R I+ G GT+Q +
Sbjct: 2106 RRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157