>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221

Score = 99.7 bits (249), Expect = 7e-22 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 12/203 (5%) Query: 25 LLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 LL +L K+Y V+KGV L + GEIV ++G +G+GK+T +++ GL SG Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 Query: 81 SIKIDGNDITKMPMYRRARL-----GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135 + +G ++K+ RA+L G Y Q + T EN+ L + +K K+ Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIY--QFHHLLPDFTALENVAMPLLIGKKSVKEA 118 Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 E+ +L++ + + LSGG+R+R+ IAR+LV+ PS +L DEP +D Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 Query: 196 DIHVLIRDLAS-RGIGILITDHN 217 I L+ +L L+ H+ Sbjct: 179 IIFDLMLELNRELNTSFLVVTHD 201

RPSBLAST alignment for GI: 254780744 and conserved domain: TIGR02211