RPSBLAST alignment for GI: 254780744 and conserved domain: TIGR02857

>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

 Score = 98.1 bits (245), Expect = 2e-21
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 31/208 (14%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
            ++ V   V PGE V L+GP+GAGK+T   ++ G +    GSI ++G  +         R
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW-R 395

Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEK--LDSLLKEFNITKWRHVLA 156
             I+++PQ   +F G T+ ENI LA  +  + + ++  E+  LD  +             
Sbjct: 396 DQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIRRALERAGLDEFVAA----------L 444

Query: 157 PL------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
           P             LSGGQ +RL +AR+ +     +LLDEP A +D    + +   +R L
Sbjct: 445 PQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRAL 504

Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIH 232
           A     +L+T    H +        I+ 
Sbjct: 505 AQGRTVLLVT----HRLALAERADRIVV 528