RPSBLAST alignment for GI: 254780744 and conserved domain: TIGR03796
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710
Score = 79.6 bits (197), Expect = 8e-16
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 43/223 (19%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+++ L ++PG+ V L+G +G+GK+T ++ GL SG I DG ++P R
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP---REV 550
Query: 100 L--GISYLPQEASIFRGLTVEENIL--------AVLEVYEKDK------KKRHEKLDSLL 143
L ++ + Q+ +F G TV +N+ A L KD R D+ L
Sbjct: 551 LANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL 609
Query: 144 KE--FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
E N LSGGQR+RLEIAR+LV PS ++LDE + +DP I
Sbjct: 610 AEGGAN-----------LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII---D 655
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
+L RG +I H + T+ D II VL G V +
Sbjct: 656 DNLRRRGCTCIIV---AHRLSTIRDCDEII----VLERGKVVQ 691