RPSBLAST alignment for GI: 254780744 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 41.0 bits (96), Expect = 3e-04
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 29/185 (15%)
Query: 58 GPNGAGKTTFF----YMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFR 113
G NGAGKTT Y +TG + +S D I + L E + +
Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE-----GEVRAQVKLAFENANGK 83
Query: 114 GLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRR------RL 167
T+ + L + E + + L + + SGG++ RL
Sbjct: 84 KYTITRS----LAILENVIFCHQGESNWPLLD---------MRGRCSGGEKVLASLIIRL 130
Query: 168 EIARSLVSFPSYILLDEPFAGVDPVAISD-IHVLIRDLASRGIGILITDHNVHEILTLID 226
+A + S + LDEP +D I + + +I + S+ LI + E++ D
Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190
Query: 227 RAYII 231
Y +
Sbjct: 191 HIYRV 195