RPSBLAST alignment for GI: 254780744 and conserved domain: cd03240

>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 29/185 (15%)

Query: 58  GPNGAGKTTFF----YMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFR 113
           G NGAGKTT      Y +TG +  +S     D   I +             L  E +  +
Sbjct: 29  GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE-----GEVRAQVKLAFENANGK 83

Query: 114 GLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRR------RL 167
             T+  +    L + E        + +  L +         +    SGG++       RL
Sbjct: 84  KYTITRS----LAILENVIFCHQGESNWPLLD---------MRGRCSGGEKVLASLIIRL 130

Query: 168 EIARSLVSFPSYILLDEPFAGVDPVAISD-IHVLIRDLASRGIGILITDHNVHEILTLID 226
            +A +  S    + LDEP   +D   I + +  +I +  S+    LI   +  E++   D
Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190

Query: 227 RAYII 231
             Y +
Sbjct: 191 HIYRV 195