RPSBLAST alignment for GI: 254780744 and conserved domain: cd03294
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269
Score = 121 bits (306), Expect = 1e-28
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 14/242 (5%)
Query: 13 PEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT 72
+ SK+ +L KK V V L V+ GEI ++G +G+GK+T +
Sbjct: 18 FKLLAKGKSKEEIL------KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN 71
Query: 73 GLICADSGSIKIDGNDITKMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEV 127
LI SG + IDG DI M RR ++ + + Q ++ TV EN+ LEV
Sbjct: 72 RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVF--QSFALLPHRTVLENVAFGLEV 129
Query: 128 YEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187
+ +R E+ L+ + W H LSGG ++R+ +AR+L P +L+DE F+
Sbjct: 130 QGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189
Query: 188 GVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+DP+ ++ + L A I+ H++ E L L DR I+ G ++ GT +EI+
Sbjct: 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
Query: 247 DN 248
N
Sbjct: 250 TN 251