RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (262 letters) >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 359 bits (924), Expect = e-100 Identities = 150/243 (61%), Positives = 181/243 (74%), Gaps = 2/243 (0%) Query: 22 KDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81 S L A +L K Y VV V L V GEIVGLLGPNGAGKTT FYM+ GL+ DSG Sbjct: 1 DMSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60 Query: 82 IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK--L 139 I +D DITK+PM++RARLGI YLPQEASIFR LTVE+NI+AVLE+ EKD KK K L Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEEL 120 Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 D+LL+EF+IT R A LSGG+RRR+EIAR+L + P +ILLDEPFAGVDP+A+ DI Sbjct: 121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR 180 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGDR 259 +I+ L RGIG+LITDHNV E L + DRAYII G VLA G+ +EI++N+DVRR+YLG+ Sbjct: 181 IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYLGEN 240 Query: 260 FAF 262 F Sbjct: 241 FKL 243 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 354 bits (911), Expect = 1e-98 Identities = 149/232 (64%), Positives = 181/232 (78%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L A +L+K+Y VV GV L VK GEIVGLLGPNGAGKTT FYM+ GL+ DSG I +D Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G DITK+PM++RARLGI YLPQEASIFR LTVEENILAVLE+ KK+R EKL+ LL+E Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEE 120 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 F+IT R A LSGG+RRR+EIAR+L + P ++LLDEPFAGVDP+A+ DI +I+ L Sbjct: 121 FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257 RGIG+LITDHNV E L++ DRAYII+ G VLA GT +EI N+ VR++YLG Sbjct: 181 DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 214 bits (548), Expect = 2e-56 Identities = 90/236 (38%), Positives = 138/236 (58%), Gaps = 10/236 (4%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L LTK++ + + V V+PGEI GL+GPNGAGKTT F +++G + SGS+ D Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL----------AVLEVYEKDKKKR 135 G DIT +P + ARLGI Q +F LTV EN++ +L +++++ Sbjct: 61 GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA 120 Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 E+ + LL+ + A LS GQ+RRLEIAR+L + P +LLDEP AG++P Sbjct: 121 RERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180 Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 ++ LIR+L RGI +L+ +H++ +++L DR ++ G V+A GT E+ +N V Sbjct: 181 ELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPRV 236 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 211 bits (539), Expect = 2e-55 Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 13/248 (5%) Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82 LL L+K++ + V V L V+PGEIVGL+GPNGAGKTT F ++TG SG++ Sbjct: 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61 Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAV------------LEVYEK 130 G DIT +P +R ARLGI+ Q +F GLTV EN+ K Sbjct: 62 IFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121 Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 ++++ E+ LL+ + + A LS GQ+RRLEIAR+L + P +LLDEP AG++ Sbjct: 122 EEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181 Query: 191 PVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 P ++ LIR+L R G+ IL+ +H++ ++ L DR +++ G V+A GT +E+ +N Sbjct: 182 PEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241 Query: 250 DVRRLYLG 257 V YLG Sbjct: 242 RVIEAYLG 249 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 203 bits (518), Expect = 4e-53 Identities = 92/237 (38%), Positives = 137/237 (57%), Gaps = 3/237 (1%) Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82 +L +L+ Y + ++GV L V+ GEIV LLG NGAGKTT + GL+ SG I Sbjct: 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60 Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 DG DIT +P + RARLGI+Y+P+ IF LTVEEN+L + + L+ + Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE-RDLEEV 119 Query: 143 LKEF-NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 + F + + R+ A LSGG+++ L IAR+L+S P +LLDEP G+ P + +I I Sbjct: 120 YELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 179 Query: 202 RDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257 ++L G+ IL+ + N L + DR Y++ G ++ GT E++ + DVR YLG Sbjct: 180 KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYLG 236 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 201 bits (512), Expect = 2e-52 Identities = 88/226 (38%), Positives = 135/226 (59%), Gaps = 4/226 (1%) Query: 24 SLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82 ++ +LTKKY + GV V+PGEI GLLGPNGAGKTT ++ GL+ SG I Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62 Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 + G D+ K P R R+G Y+PQE S++ LTV EN+ +Y K++ E+++ L Sbjct: 63 LVLGYDVVKEPAKVRRRIG--YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120 Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 L+ F + + LSGG ++RL IA +L+ P ++LDEP +G+DP + +I L+R Sbjct: 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180 Query: 203 DLASRG-IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 +LA G + IL++ H + E L DR I++ G ++A GT +E+ + Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 200 bits (510), Expect = 4e-52 Identities = 95/224 (42%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L +L Y ++ GV L V GEIV LLG NGAGKTT + GL+ SGSI+ D Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G DIT +P + RAR GI Y+P+ IF LTVEEN+L L Y + + KR +L+ + + Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLL--LGAYARRRAKRKARLERVYEL 118 Query: 146 FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 F K R LA LSGG+++ L IAR+L+S P +LLDEP G+ P + +I IR+L Sbjct: 119 FPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178 Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 G+ IL+ + N L + DRAY++ G V+ GT E++ + Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 176 bits (449), Expect = 4e-45 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 26 LSACSLTKKYNS--VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 L +LTK Y V + L V GEI GLLG NGAGKTT M+TG + SG+ Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143 I+G I + AR + Y PQ ++F LTV E++ + K + E+++ LL Sbjct: 61 INGYSIRTDR--KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 + +T + A LSGG +R+L +A +L+ PS +LLDEP +G+DP + I LI + Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178 Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + +G I++T H++ E L DR I+ G + G+ QE+ Sbjct: 179 V-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 170 bits (432), Expect = 4e-43 Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 38/211 (18%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 + +L+K+Y + + L V+ GEI GLLGPNGAGKTT ++ GL+ DSG IK+ Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G DI K P + R+G YLP+E S++ LTV EN+ Sbjct: 61 GKDIKKEPEEVKRRIG--YLPEEPSLYENLTVRENL------------------------ 94 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 LSGG ++RL +A++L+ P ++LDEP +G+DP + + L+R+L Sbjct: 95 ------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGV 236 G IL++ H + E L DR I++ G + Sbjct: 143 KEGKTILLSSHILEEAERLCDRVAILNNGRI 173 >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 168 bits (426), Expect = 2e-42 Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 11/231 (4%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 LT Y + V++ + L V+ GEI L+GPNGAGK+T + GL+ SG IKI G + Sbjct: 10 LTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR 69 Query: 91 KMPMYRRARLGISYLPQEASIFRG--LTVEENILAVLE----VYEKDKKKRHEKLDSLLK 144 K RR RL I Y+PQ++S+ R +TV++ +L + + KK EK+D L+ Sbjct: 70 K----RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALE 125 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 + R LSGGQ++R+ +AR+L P +LLDEPF GVD +I+ L+++L Sbjct: 126 RVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL 185 Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 G +L+ H++ ++ DR I ++A G +E++ +++ + + Sbjct: 186 RQEGKTVLMVTHDLGLVMAYFDR-VICLNRHLIASGPPEEVLTEENLEKAF 235 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 165 bits (419), Expect = 1e-41 Identities = 87/216 (40%), Positives = 116/216 (53%), Gaps = 3/216 (1%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 L KKY V+GV V+ GEI GLLGPNGAGKTT M+T L+ SG + G+D+ Sbjct: 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV 65 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 + P R R I + Q+ S+ LT EN+ +Y +R E++D LL + + Sbjct: 66 REP--REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE 123 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGI 209 L SGG RRRLEIARSLV P + LDEP G+DP + + I L G+ Sbjct: 124 AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183 Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 IL+T H + E L DR II G ++A GT +E+ Sbjct: 184 TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 163 bits (414), Expect = 4e-41 Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 L+K Y SV + + L V+PGE + LLGP+G GKTT ++ GL DSG I IDG D+T Sbjct: 6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT 65 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 +P RR I + Q+ ++F LTV ENI L++ K + ++ LL+ + Sbjct: 66 GVPPERR---NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG 122 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGI 209 + LSGGQ++R+ +AR+L PS +LLDEP + +D ++ +++L GI Sbjct: 123 LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182 Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 + H+ E L L DR +++ G ++ G Sbjct: 183 TTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 161 bits (410), Expect = 1e-40 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 LTK + V+KGVDL V+ GEI+ ++GP+G+GK+T ++ GL+ DSG + IDG DI+ Sbjct: 6 LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS 65 Query: 91 KM--PMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEFN 147 + R R + L Q ++F LTV EN+ + E +++ E + L+ Sbjct: 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVG 125 Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-AS 206 + + LSGG ++R+ +AR+L P +L DEP AG+DP+A I LIR L Sbjct: 126 LRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 G+ ++ H++ + DR +++ G ++A GT +E+ + D Sbjct: 186 LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD 229 >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 159 bits (405), Expect = 5e-40 Identities = 82/249 (32%), Positives = 137/249 (55%), Gaps = 11/249 (4%) Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79 AS + L+ +TK + ++ GVDL V GEI+ +LG +G+GK+T ++ GL+ D Sbjct: 3 ASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK 62 Query: 80 GSIKIDGNDITKMPMYRR--ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137 G I IDG DI ++ R + L Q+ ++F LTV EN+ + E K Sbjct: 63 GEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV--AFPLREHTKLPESL 120 Query: 138 KLDSLLKEFNITKWRHVLAPL----LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 + +L + + R A L LSGG R+R+ +AR++ P + LDEP +G+DP++ Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180 Query: 194 ISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD-- 250 I LIR+L + G+ +++ H++ +LT+ DR ++ G V+A GT +E++ + D Sbjct: 181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPW 240 Query: 251 VRRLYLGDR 259 VR+ + G R Sbjct: 241 VRQFFNGIR 249 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 157 bits (399), Expect = 3e-39 Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 2/197 (1%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98 + + L +K GE V ++GPNG+GK+T ++ GL+ SG + +DG D+TK+ + Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELR 74 Query: 99 RLGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157 R + + Q F G TVEE + LE +++ E+++ L+ + R Sbjct: 75 RK-VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF 133 Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217 LSGGQ++R+ IA L P +LLDEP AG+DP ++ L++ L + G I+I H+ Sbjct: 134 TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD 193 Query: 218 VHEILTLIDRAYIIHAG 234 + +L L DR ++ G Sbjct: 194 LDLLLELADRVIVLEDG 210 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 156 bits (395), Expect = 7e-39 Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 +TK + V + V PGEI GLLGPNGAGKTT F M+ GL+ G I +G + Sbjct: 7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL 66 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 + + + I YLP+E ++ +TVE+ + + E+ K + +KL + L+ I Sbjct: 67 S-----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV 121 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209 + LS G +++++ +++ P ++LDEPF+G+DPV + + I +L G Sbjct: 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181 Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYL 256 I+ + H + + L DR ++ G + +GTV++I + +RL + Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVI 228 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 155 bits (392), Expect = 1e-38 Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 ++ K + S V+K V+L ++ GE V LLGP+G GK+T M+ GL SG I IDG D+ Sbjct: 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 T +P +R GI+ + Q +++ +TV ENI L++ K + +++ + K + Sbjct: 68 TDLPPEKR---GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE 124 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV-AISDIHVLIRDLASRG 208 + LSGGQR+R+ +AR+LV P LLDEP + +D + + + G Sbjct: 125 HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG 184 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + H+ E +TL DR +++ G + GT E+ + Sbjct: 185 TTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 154 bits (391), Expect = 2e-38 Identities = 78/216 (36%), Positives = 119/216 (55%), Gaps = 13/216 (6%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 LT Y V++ V VKPGE + ++GPNGAGK+T + GL+ SGSI++ G + Sbjct: 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE 64 Query: 91 KMPMYRRARLGISYLPQEASIFRG--LTVEENILAVL----EVYEKDKKKRHEKLDSLLK 144 K R I Y+PQ SI R ++V + +L L ++ + K K+D L+ Sbjct: 65 KE------RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALE 118 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 +++ LSGGQ++R+ +AR+LV P +LLDEPFAGVDP DI+ L+R+L Sbjct: 119 RVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 G+ IL+ H++ +L DR ++ V+A G Sbjct: 179 RREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 153 bits (389), Expect = 4e-38 Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 5/227 (2%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 L +++K + V + L +K GE V LLGP+G GKTT M+ G SG Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60 Query: 81 SIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK-RHEKL 139 I +DG DIT +P +R I + Q ++F +TVEEN+ L+V +K KK ++ Sbjct: 61 EILLDGEDITDVPPEKR---PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117 Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 + L+ + + LSGGQ++R+ +AR+LV P +LLDEP + +D + Sbjct: 118 EEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRK 177 Query: 200 LIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 +++L GI + H+ E L + DR +++ G + GT +EI Sbjct: 178 ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 151 bits (383), Expect = 2e-37 Identities = 68/237 (28%), Positives = 125/237 (52%), Gaps = 6/237 (2%) Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 +L +L+ Y ++ + + GEI G+LGPNG+GK+T + GL+ SG + Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKDKKKRHEKL 139 +DG DI + A+ ++Y+PQ S GLTV E +L L ++ + K+ E + Sbjct: 61 LDGKDIASLSPKELAKK-LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119 Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 + L+ + LSGG+R+R+ IAR+L +LLDEP + +D ++ Sbjct: 120 EEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179 Query: 200 LIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 L+RDL +G+ +++ H+++ D ++ G ++A GT +E++ +++R +Y Sbjct: 180 LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVY 236 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 150 bits (380), Expect = 3e-37 Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 1/229 (0%) Query: 18 NRASKDSLLSACSLTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLIC 76 R+S S L +L+K Y V+G+ V PGE GLLG NGAGKTT F M+TG Sbjct: 557 FRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK 616 Query: 77 ADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRH 136 SG I G+DIT +++ R + Y PQ +++ LT E++ + + Sbjct: 617 PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIG 676 Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196 ++ LL+ + + + SGG +RRL A +L+ PS ILLDEP G+DP A Sbjct: 677 SAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRH 736 Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + +I L G I++T H++ E L R I+ G + G+ QE+ Sbjct: 737 LWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL 785 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 150 bits (380), Expect = 3e-37 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 3/222 (1%) Query: 25 LLSACSLTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 +L LTK Y S V V+ V + GEI GLLG NGAGKTT M+ L+ DSG + Sbjct: 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60 Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143 IDG D + P + R ++G+ L E ++ LT EN+ + +K+ ++ L Sbjct: 61 IDGVDTVRDPSFVRRKIGV--LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 K + ++ S G ++++ IAR+LV PS ++LDEP +G+D H I+ Sbjct: 119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178 Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 L + G ++ + H + E+ L DR ++H G V+ G+++ + Sbjct: 179 LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 150 bits (380), Expect = 5e-37 Identities = 75/210 (35%), Positives = 108/210 (51%), Gaps = 7/210 (3%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 LTK Y V+ + L+VK GEI G LGPNGAGKTT ++ GLI DSG I DG Sbjct: 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 K + R+G L + + LT EN L + + R +++D +L + Sbjct: 66 K-NIEALRRIGA--LIEAPGFYPNLTAREN----LRLLARLLGIRKKRIDEVLDVVGLKD 118 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 S G ++RL IA +L+ P ++LDEP G+DP I ++ LI L +GI Sbjct: 119 SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 +LI+ H + EI + DR II+ G ++ G Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208 >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 149 bits (378), Expect = 8e-37 Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 7/213 (3%) Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82 +LL ++K + V V++ ++L V+ GE V +LGP+G GK+T ++ GL SG + Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60 Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 +DG +T I Y+ QE ++ LTV +N+ LE+ K K + E+ L Sbjct: 61 LLDGRPVT------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL 114 Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 L+ + + LSGG R+R+ IAR+L + P +LLDEPF +D + ++ + Sbjct: 115 LELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174 Query: 203 DLASR-GIGILITDHNVHEILTLIDRAYIIHAG 234 L +L+ H+V E + L DR ++ Sbjct: 175 RLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 148 bits (376), Expect = 1e-36 Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 1/232 (0%) Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 ++ +L+K + V+KG+ L V+ GE+V ++GP+G+GK+T + GL DSGSI Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60 Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSL 142 +DG D+ + R + + Q+ ++F LTV EN+ LA ++V + K + EK L Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120 Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 L++ + LSGGQ++R+ IAR+L P +L DEP + +DP + ++ +++ Sbjct: 121 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180 Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL 254 DLA G+ ++I H + + DR + G ++ G +E DN R Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERT 232 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 147 bits (372), Expect = 4e-36 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 ++K+Y + V V+L ++ GE + L+GP+G+GKTT M+ LI SG I IDG DI+ Sbjct: 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS 66 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI-- 148 + R I Y+ Q+ +F LTV ENI V ++ DK++ ++ D LL + Sbjct: 67 DLDPV-ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDP 125 Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR- 207 +++ LSGGQ++R+ +AR+L + P +L+DEPF +DP+ + I++L Sbjct: 126 SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL 185 Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 G I+ H++ E L L DR ++ AG ++ + T EI+ N Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 146 bits (370), Expect = 5e-36 Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 5/233 (2%) Query: 23 DSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81 ++ A +L+ +Y +K V L ++ GE V L+GPNG+GK+T ++ GL+ SG Sbjct: 1 LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60 Query: 82 IKIDGNDITKMPMYRRARLGISYLPQ--EASIFRGLTVEENILAVLEVYEKDKKKRHEKL 139 + +DG D + R + + Q + +F G TVE+ + LE +++ E++ Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERV 119 Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 L+ + + LSGGQ++R+ IA L P +LLDEP AG+DP ++ Sbjct: 120 AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179 Query: 200 LIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 L++ L G I+I H++ +L DR ++ G +LA G EI ++ ++ Sbjct: 180 LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAEL 232 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 145 bits (368), Expect = 9e-36 Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 4/242 (1%) Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79 S LL ++K + V + GV L V+PGE+ LLG NGAGK+T +++G+ DS Sbjct: 3 MSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS 62 Query: 80 GSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK----DKKKR 135 G I IDG + GI+ + QE S+ L+V ENI E + D+K Sbjct: 63 GEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122 Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 + LL + L LS QR+ +EIAR+L ++LDEP A + Sbjct: 123 RRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE 182 Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 + LIR L ++G+ I+ H + E+ + DR ++ G V+ ++ RL Sbjct: 183 RLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLM 242 Query: 256 LG 257 +G Sbjct: 243 VG 244 Score = 120 bits (302), Expect = 5e-28 Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 9/208 (4%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+ V V+ GEI+G+ G GAG+T + G A SG I +DG + + Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333 Query: 100 LGISYLP---QEASIFRGLTVEENI-LAVLEVYEK----DKKKRHEKLDSLLKEFNI-TK 150 GI+Y+P + + +++ ENI LA L + + D++K + ++ I T Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP 393 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 LSGG ++++ +AR L + P ++LDEP G+D A ++I+ LIR+LA+ G Sbjct: 394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLA 238 IL+ + E+L L DR ++ G ++ Sbjct: 454 ILMISSELPELLGLSDRILVMREGRIVG 481 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 145 bits (367), Expect = 1e-35 Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 14/248 (5%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 +L ++ + + + V PGE+ L+GPNGAGKTT ++TG G Sbjct: 1 MNPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG 60 Query: 81 SIKIDGN-DITKMPMYRRARLGISYLPQEASIFRGLTVEEN----------ILAVLEVYE 129 + DG+ D+TK+P +R AR GI Q+ ++F LTV EN + A L Sbjct: 61 EVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL 120 Query: 130 KDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 + +++R ++D LL + R LA LLS GQ++ LEI L P +LLDEP AG+ Sbjct: 121 RAEERR--RIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178 Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 L++ LA IL+ +H++ + + D+ ++H G VLA G++ E+ ++ Sbjct: 179 TDAETEKTAELLKSLA-GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237 Query: 250 DVRRLYLG 257 V +YLG Sbjct: 238 KVIEVYLG 245 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 145 bits (366), Expect = 2e-35 Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 25 LLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 +++A +LTK++ +V V GV VKPGE+ GLLGPNGAGKTT M+ GL+ D+G Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 Query: 81 SIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLD 140 +DG D+ K P R RLG + ++ LT EN+ +Y + +L+ Sbjct: 61 FATVDGFDVVKEPAEARRRLGF--VSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE 118 Query: 141 SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200 L + + S G R+++ IAR+LV P +LLDEP G+D +A + Sbjct: 119 ELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178 Query: 201 IRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 IR L + G IL + H + E+ L DR ++H G V+ G Sbjct: 179 IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 142 bits (361), Expect = 6e-35 Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 8/217 (3%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L +LTK+Y + GV L + PG + GLLGPNGAGKTT ++ L SG+I+ID Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEE--NILAVLEVYEKDKKKRHEKLDSLL 143 G D+ K P R R+G YLPQE ++ TV E + +A L K+ ++D +L Sbjct: 60 GQDVLKQPQKLRRRIG--YLPQEFGVYPNFTVREFLDYIAWL--KGIPSKEVKARVDEVL 115 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 + N+ LSGG RRR+ IA++LV PS +++DEP AG+DP L+ + Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175 Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 L I IL T H V ++ +L ++ +++ G ++ G Sbjct: 176 LGEDRIVILST-HIVEDVESLCNQVAVLNKGKLVFEG 211 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 143 bits (361), Expect = 7e-35 Identities = 64/215 (29%), Positives = 122/215 (56%), Gaps = 5/215 (2%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L ++TK++ V + + V+ GEI GLLGPNGAGKTT M+ G+I DSG + D Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G P+ AR I YLP+E ++ + V + ++ + ++ K++ ++D L+ Sbjct: 61 GK-----PLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLER 115 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 ++++ + LS G +++++ +++ P ++LDEPF+G+DPV + + +IR+LA Sbjct: 116 LELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 G ++++ H + + L DR +++ G + +G Sbjct: 176 RAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 142 bits (359), Expect = 1e-34 Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 15/228 (6%) Query: 26 LSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81 L +++K Y +V ++ + L V+ GE V L+GP+G GK+T ++ GL SG Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60 Query: 82 IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS 141 + +DG +T Y+ Q+ ++ LTV +N+ LE+ K + E+ + Sbjct: 61 VLVDGEPVT------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114 Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 LL+ ++ + + LSGG R+R+ +AR+L P +LLDEPF+ +D + + + Sbjct: 115 LLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174 Query: 202 RDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 D+ G +L+ H++ E + L DR ++ A G + ++ Sbjct: 175 LDIWRETGKTVLLVTHDIDEAVFLADRVVVLSAR----PGRIVAEVEV 218 >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 141 bits (358), Expect = 2e-34 Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 9/217 (4%) Query: 26 LSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81 + +L+K Y V +KGV L ++ GE V ++GP+G+GK+T ++ GL SG Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60 Query: 82 IKIDGNDITKMPMYRRARL---GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138 +++DG DI+K+ A I ++ Q ++ LT EN+ L + KK+R E+ Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120 Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 + LL+ + + LSGGQ++R+ IAR+L + P IL DEP +D ++ Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180 Query: 199 VLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAG 234 L+R+L G I++ H+ E+ DR + G Sbjct: 181 ELLRELNKEAGTTIVVVTHD-PELAEYADRIIELRDG 216 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 140 bits (355), Expect = 3e-34 Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 3/217 (1%) Query: 32 TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK 91 +V + V L + GEI G++G +GAGK+T ++ L SGS+ +DG D+T Sbjct: 13 QTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA 72 Query: 92 MPMY--RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 + R+ R I + Q ++ TV EN+ LE+ K + +++ LL+ ++ Sbjct: 73 LSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS 132 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRG 208 LSGGQ++R+ IAR+L + P +L DE + +DP I L++D+ G Sbjct: 133 DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELG 192 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + I++ H + + + DR ++ G ++ GTV E+ Sbjct: 193 LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 139 bits (352), Expect = 8e-34 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 4/220 (1%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 +++K Y + GV L +K GE LLGP+G GKTT ++ G SG I +DG DI Sbjct: 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 T +P ++R ++ + Q ++F LTV ENI L + + K + E++ L + Sbjct: 65 TNLPPHKR---PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE 121 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208 + + LSGGQ++R+ IAR+LV+ P +LLDEP +D D+ + ++ L G Sbjct: 122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELG 181 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 I + H+ E LT+ DR +++ G + GT +EI + Sbjct: 182 ITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 139 bits (351), Expect = 1e-33 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 14/223 (6%) Query: 25 LLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 ++ +++K Y V +K V+L ++ GE V ++GP+G+GK+T ++ GL SG Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 Query: 81 SIKIDGNDITKMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135 + I+G D+TK+ RR ++G ++ Q ++ LTV EN+ L + K +R Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIG--FVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118 Query: 136 HEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194 + LL+ + P LSGGQ++R+ IAR+L++ P IL DEP +D Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178 Query: 195 SDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGV 236 ++ L+R+L RG I++ H+ E+ DR + G + Sbjct: 179 KEVLELLRELNKERGKTIIMVTHD-PELAKYADRVIELKDGKI 220 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 138 bits (349), Expect = 2e-33 Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 30 SLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 +++K + V +K V L V GEI G++G +GAGK+T + GL SGS+ +D Sbjct: 6 NVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65 Query: 86 GNDITKMP--MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143 G D+T + R+AR I + Q ++ TV EN+ LE+ K + E++ LL Sbjct: 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELL 125 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 + + LSGGQ++R+ IAR+L + P +L DE + +DP I L+RD Sbjct: 126 ELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRD 185 Query: 204 L-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + G+ I++ H + + + DR ++ G V+ GTV+E+ N Sbjct: 186 INRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 137 bits (347), Expect = 2e-33 Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 36/206 (17%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 ++K+Y V+ V L ++ GEIV LLGP+G+GK+T + GL DSGSI IDG D+T Sbjct: 6 VSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT 65 Query: 91 KMPMYRRA-RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 + R I + Q+ ++F LTV ENI Sbjct: 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENI---------------------------- 97 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRG 208 A LSGGQ++R+ +AR+L P +LLDEP + +DP+ ++ L++ L A G Sbjct: 98 ------ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151 Query: 209 IGILITDHNVHEILTLIDRAYIIHAG 234 I +++ H++ E L DR ++ G Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 135 bits (341), Expect = 1e-32 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 19/229 (8%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKI 84 L Y + +K + L + GEI L+GP+G GK+T ++ L D G + + Sbjct: 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 Query: 85 DGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLD 140 DG DI + + R R+G+ + Q+ + F G ++ +N+ L ++ K K++ E+++ Sbjct: 65 DGKDIYDLDVDVLELRRRVGMVF--QKPNPFPG-SIYDNVAYGLRLHGIKLKEELDERVE 121 Query: 141 SLLKEFNITKWRHVLAPL----LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196 L++ + W V L LSGGQ++RL +AR+L + P +LLDEP + +DP++ + Sbjct: 122 EALRKAAL--WDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179 Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 I LI +L I+I HN+ + + DR + G ++ G ++I Sbjct: 180 IEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 135 bits (341), Expect = 1e-32 Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 5/220 (2%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 +L+K + + +K V L V+ G+ +LGP G+GK+ + G I DSG I ++G DI Sbjct: 5 NLSKDWKE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 T +P +R ISY+PQ ++F +TV +NI L+ + DKK+ K+ + + I Sbjct: 64 TNLPPEKR---DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID 120 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208 + LSGG+++R+ IAR+LV P +LLDEPF+ +D + ++ + G Sbjct: 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + +L H+ E L D+ I+ G ++ G +E+ Sbjct: 181 VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 132 bits (334), Expect = 9e-32 Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 30 SLTKKYNSVY-VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88 ++TK+Y V ++L + GE + L+GP+G+GKTT M+ LI SG I IDG D Sbjct: 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED 64 Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148 I + R I Y+ Q+ +F +TVEENI V ++ + K+K E+ D LL + Sbjct: 65 IREQDPVELRR-KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL 123 Query: 149 --TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 ++ LSGGQ++R+ +AR+L + P +L+DEPF +DP+ + + L Sbjct: 124 DPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ 183 Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 G I+ H++ E L DR I+ G ++ GT EI+ + Sbjct: 184 ELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 132 bits (332), Expect = 1e-31 Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---N 87 + K++ + + + L +K GE+V LLGP+GAGK+T ++ GL D+G I+++G Sbjct: 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF 67 Query: 88 DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLLKE 145 D++ + + R + ++ Q ++F +TV +NI L+V ++ + + +++ LL+ Sbjct: 68 DVSNLAVRDR---KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL 124 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + LSGGQR+R+ +AR+L P +LLDEPF +D ++ +R L Sbjct: 125 VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH 184 Query: 206 SR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 R G+ + H+ E L L DR +++ G + G E+ D+ Sbjct: 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 131 bits (331), Expect = 2e-31 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 3/241 (1%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 L +TK++ V V L VK GEI LLG NGAGK+T ++ GL DSG I++ Sbjct: 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE---KDKKKRHEKLDS 141 DG ++ RLGI + Q + LTV ENI+ LE + D+++ ++ Sbjct: 64 DGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKE 123 Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 L + + + LS G+++R+EI ++L ++LDEP A + P ++ ++ Sbjct: 124 LSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEIL 183 Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGDRFA 261 R LA+ G I+ H + E++ + DR ++ G V+ +++ L +G Sbjct: 184 RRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVV 243 Query: 262 F 262 Sbjct: 244 L 244 Score = 109 bits (274), Expect = 8e-25 Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 19/252 (7%) Query: 10 IEMPEFQENRASKDSLLSACSLT-KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFF 68 + + + + +L L+ K V VK V V+ GEIVG+ G G G++ Sbjct: 242 VVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301 Query: 69 YMMTGLICADSGSIKIDGNDI-TKMPMYRRARLGISYLPQEASIFRGL----TVEENILA 123 ++GL SG I ++G D+ ++ R RLG++Y+P++ GL ++ EN+ Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPED-RHGHGLVLDLSLAENL-- 358 Query: 124 VLEVYEKDKKKRHEKLD---------SLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSL 173 VL ++K R LD L++EF++ A LSGG +++L +AR L Sbjct: 359 VLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAREL 418 Query: 174 VSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHA 233 P ++ +P G+D AI IH + +L G +L+ ++ EIL L DR +I+ Sbjct: 419 ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYE 478 Query: 234 GGVLAHGTVQEI 245 G ++ +E Sbjct: 479 GRIVGIVPPEEA 490 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 131 bits (330), Expect = 3e-31 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 12/228 (5%) Query: 25 LLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 LL +L+ + SV + V +K GE +GL+G +G+GK+T + GL+ SG Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60 Query: 81 SIKIDGNDITKMPMYRRARLG--ISYLPQEA--SIFRGLTVEENILAVLEVYEKDKKKRH 136 SI DG D+ K+ R I + Q+ S+ +T+ E I L ++ K KK Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120 Query: 137 EKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 K LL + VL LSGGQR+R+ IAR+L P ++ DEP + +D Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180 Query: 194 ISDIHVLIRDLAS-RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 + I L++ L G+ +L H++ + + DR +++AG ++ G Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 129 bits (327), Expect = 5e-31 Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 8/223 (3%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 ++K++ + V L + GE+V LLGP+G+GKTT ++ GL DSG+I G D T Sbjct: 8 VSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT 67 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK----DKKKRHEKLDSLLKEF 146 +P+ R + ++ Q ++FR +TV +N+ L V + + + K+ LLK Sbjct: 68 DVPVQER---NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV 124 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 + LSGGQR+R+ +AR+L P +LLDEPF +D ++ +R L Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184 Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + + H+ E L + DR +++ G + GT E+ D+ Sbjct: 185 ELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 130 bits (327), Expect = 5e-31 Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 4/214 (1%) Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104 DL V GEIV +LGP+GAGK+T ++ G SG I I+G D T P R +S Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERP---VSM 75 Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164 L QE ++F LTV +NI L K ++ EK+++ + + + L LSGGQR Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135 Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RGIGILITDHNVHEILT 223 +R+ +AR LV +LLDEPF+ +DP +++ L+ L R + +L+ H+ + Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR 195 Query: 224 LIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257 + DR + G + A G+ QE++ + LG Sbjct: 196 IADRVVFLDNGRIAAQGSTQELLSGKASAAALLG 229 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 129 bits (326), Expect = 8e-31 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 36/211 (17%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 L+ Y V+ + L ++ GEIVG+LGPNGAGK+T + GL+ SG I +DG D+ Sbjct: 5 LSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA 64 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 + AR I+Y+PQ L+ + Sbjct: 65 SLSPKELARK-IAYVPQ----------------------------------ALELLGLAH 89 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGI 209 LSGG+R+R+ +AR+L P +LLDEP + +D ++ L+R LA RG Sbjct: 90 LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK 149 Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 +++ H+++ DR ++ G ++A G Sbjct: 150 TVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 129 bits (325), Expect = 1e-30 Identities = 60/234 (25%), Positives = 115/234 (49%), Gaps = 6/234 (2%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 SK ++ V V V ++ GE +GL+G +G+GK+T ++ GL+ SG Sbjct: 287 SKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG 346 Query: 81 SIKIDGNDITKMP---MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRH 136 SI DG D+ R R+ + + +S+ +TV + + L ++ +R Sbjct: 347 SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERR 406 Query: 137 EKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 ++ LL+ + ++ LSGGQR+R+ IAR+L P ++LDEP + +D + Sbjct: 407 ARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQA 466 Query: 196 DIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + L++DL G+ L H++ + + DR +++ G ++ G +++ +N Sbjct: 467 QVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520 Score = 127 bits (320), Expect = 3e-30 Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 17/243 (6%) Query: 23 DSLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI--- 75 LL +LT ++ + V V+ V V+PGEI+G++G +G+GK+T + GL+ Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62 Query: 76 -CADSGSIKIDGNDITKMP-MYRRARLG--ISYLPQE--ASIFRGLTVEENILAVLEV-Y 128 SG + +DG D+ + R G I+ + Q+ S+ +T+ + I L + Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122 Query: 129 EKDKKKRHEKLDSLLKEFNI--TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPF 186 + + + ++ LL++ + + R LSGG R+R+ IA +L P ++ DEP Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 Query: 187 AGVDPVAISDIHVLIRDLAS-RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 +D + I L++DL G+ +L H++ + L DR +++ G ++ G +EI Sbjct: 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI 242 Query: 246 IDN 248 + N Sbjct: 243 LSN 245 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 128 bits (323), Expect = 1e-30 Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 19/245 (7%) Query: 26 LSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 + +L+K Y N +K V L + PGE V L+GP+GAGK+T + GL+ SGS+ I Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 Query: 85 DGNDITKMPMY--RRARLGISYLPQEASIFRGLTVEENIL-----------AVLEVYEKD 131 DG DI K+ R+ R I + Q+ ++ L+V EN+L ++ ++ K+ Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120 Query: 132 KKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 +K ++ + L+ + + A LSGGQ++R+ IAR+L+ P IL DEP A +DP Sbjct: 121 EK---QRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP 177 Query: 192 VAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 + + L++ + GI ++++ H V DR + G ++ G E + ++ Sbjct: 178 ASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE-LTDEV 236 Query: 251 VRRLY 255 + +Y Sbjct: 237 LDEIY 241 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 127 bits (321), Expect = 3e-30 Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 2/209 (0%) Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92 +KY V +KG+ ++ GEIVG +GPNGAGKTT +++GL+ SG +++ G K Sbjct: 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR 88 Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152 R+G+ Q+ ++ L V ++ + +Y+ + ++LD L + ++ + Sbjct: 89 RKKFLRRIGV-VFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL 147 Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGI 211 LS GQR R EIA +L+ P + LDEP G+D VA +I +++ RG + Sbjct: 148 DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207 Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHG 240 L+T H + +I L R +I G +L G Sbjct: 208 LLTSHYMKDIEALARRVLVIDKGRLLYDG 236 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 127 bits (320), Expect = 3e-30 Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 21/249 (8%) Query: 23 DSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81 + ++ +L+K Y +K V+L + GE+V ++GP+GAGK+T + GL+ SG Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60 Query: 82 IKIDGNDITKMP--MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY----------- 128 I +G ITK+ R+ R I + Q+ ++ L+V EN+L Y Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120 Query: 129 -EKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187 ++DK + + L+ + I + A LSGGQ++R+ IAR+LV P IL DEP A Sbjct: 121 SKEDKAQALDALERV----GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVA 176 Query: 188 GVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 +DP + + +++D+ GI +++ H V DR + AG ++ G E + Sbjct: 177 SLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE-L 235 Query: 247 DNQDVRRLY 255 ++ + +Y Sbjct: 236 TDEALDEIY 244 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 126 bits (319), Expect = 4e-30 Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 52/208 (25%) Query: 27 SACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG 86 +L+ +Y + V L +K GEIV L+GPNG+GK+T + GL+ SG I IDG Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 Query: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146 DI K+P R I Y+PQ Sbjct: 61 KDIAKLP-LEELRRRIGYVPQ--------------------------------------- 80 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 LSGGQR+R+ +AR+L+ P +LLDEP +G+DP + + L+R+LA Sbjct: 81 ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE 128 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAG 234 G ++I H+ DR ++ G Sbjct: 129 EGRTVIIVTHDPELAELAADRVIVLKDG 156 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 126 bits (318), Expect = 5e-30 Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 16/234 (6%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI---CADSGSI 82 L+ S K + ++KGV KPGE++ ++GP+G+GKTT + G + SG I Sbjct: 31 LTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI 90 Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL--AVLEVYEK-DKKKRHEKL 139 ++G + Y+ Q+ + LTV E + A+L + K+++ E++ Sbjct: 91 LLNGRPRDSRSFRKI----SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERV 146 Query: 140 DSLLKEFNITKWRHVLAP-----LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194 + ++ E + K L LSGG+R+R+ IA L++ PS + LDEP +G+D + Sbjct: 147 EEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSA 206 Query: 195 SDIHVLIRDLASRGIGILITDHNV-HEILTLIDRAYIIHAGGVLAHGTVQEIID 247 + L++ LA G ++ T H E+ L D+ ++ G V+ G+ +E+++ Sbjct: 207 LQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 123 bits (311), Expect = 4e-29 Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 10/210 (4%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGNDITKMPMYRR 97 ++KGV+L VK GE+ ++GPNG+GK+T Y + G + G I DG DI ++ R Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR---HEKLDSLLKEFNITK--WR 152 AR GI Q G+T + + A + + ++L + + + Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138 Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 + SGG+++R EI + L+ P +LDEP +G+D A+ + I L G G+L Sbjct: 139 RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVL 198 Query: 213 ITDHNVHEILTLI--DRAYIIHAGGVLAHG 240 I H +L I D+ ++++ G ++ G Sbjct: 199 IITHY-QRLLDYIKPDKVHVLYDGRIVKSG 227 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 122 bits (309), Expect = 6e-29 Identities = 69/208 (33%), Positives = 116/208 (55%), Gaps = 6/208 (2%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 L K + +V+KG+DL VK GE+V ++GP+G+GK+T + L DSG+I IDG +T Sbjct: 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65 Query: 91 KMP---MYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEF 146 R ++G+ + Q+ ++F LTV ENI LA ++V K + E+ LL++ Sbjct: 66 DDKKNINELRQKVGMVF--QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKV 123 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 + LSGGQ++R+ IAR+L P +L DEP + +DP + ++ +++DLA Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAG 234 G+ +++ H + + DR + G Sbjct: 184 EGMTMVVVTHEMGFAREVADRVIFMDDG 211 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 123 bits (309), Expect = 7e-29 Identities = 60/234 (25%), Positives = 116/234 (49%), Gaps = 10/234 (4%) Query: 23 DSLLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD 78 +LLS +L+ Y + + + V L ++ GE +G++G +G+GK+T ++ GL Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60 Query: 79 SGSIKIDGNDITKMPMYRRARLGISYLPQ--EASIFRGLTVEENILAVLEVYEKDKKKRH 136 SGSI +DG + + + + Q +S+ TV + L + K ++ Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQ- 119 Query: 137 EKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 ++ LL + + + LSGGQR+R+ IAR+L+ P ++LDEP + +D + Sbjct: 120 -RIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178 Query: 196 DIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 I L+ +L RG+ L H++ + + DR ++ G ++ G +E++ + Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 121 bits (306), Expect = 1e-28 Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 14/242 (5%) Query: 13 PEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT 72 + SK+ +L KK V V L V+ GEI ++G +G+GK+T + Sbjct: 18 FKLLAKGKSKEEIL------KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN 71 Query: 73 GLICADSGSIKIDGNDITKMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEV 127 LI SG + IDG DI M RR ++ + + Q ++ TV EN+ LEV Sbjct: 72 RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVF--QSFALLPHRTVLENVAFGLEV 129 Query: 128 YEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187 + +R E+ L+ + W H LSGG ++R+ +AR+L P +L+DE F+ Sbjct: 130 QGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189 Query: 188 GVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 +DP+ ++ + L A I+ H++ E L L DR I+ G ++ GT +EI+ Sbjct: 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 Query: 247 DN 248 N Sbjct: 250 TN 251 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 120 bits (304), Expect = 3e-28 Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 35/198 (17%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+ V V+ GEIVG+ G G G+T + GL SG I +DG +T+ R Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74 Query: 100 LGISYLP---QEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA 156 GI+Y+P + + L+V ENI L+ Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENI--------------------------------ALS 102 Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216 LLSGG ++++ +AR L P ++LDEP GVD A ++I+ LIR+LA G +L+ Sbjct: 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISS 162 Query: 217 NVHEILTLIDRAYIIHAG 234 + E+L L DR +++ G Sbjct: 163 ELDELLGLCDRILVMYEG 180 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 119 bits (301), Expect = 6e-28 Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 41/199 (20%) Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95 V+K V L +KPGE V ++GP+G+GK+T ++ L SG I IDG D+ + + Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE 72 Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155 + I+Y+PQ+ +F G T+ ENI Sbjct: 73 SLRKN-IAYVPQDPFLFSG-TIRENI---------------------------------- 96 Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215 LSGGQR+R+ IAR+L+ P ++LDE + +DP + I +R LA I+I Sbjct: 97 ---LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA- 152 Query: 216 HNVHEILTLIDRAYIIHAG 234 H + I DR ++ G Sbjct: 153 HRLSTIR-DADRIIVLDDG 170 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 118 bits (296), Expect = 2e-27 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 15/223 (6%) Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM-Y 95 V ++KGV L + G+ V L+GP+G+GK+T ++ SG + IDG DI + + + Sbjct: 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKW 424 Query: 96 RRARLGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKKKR--HEKLDSLLKEFNI 148 R+++G+ + QE +F T+ ENI A E E+ K H+ + L ++ Sbjct: 425 LRSQIGL--VSQEPVLF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481 Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRG 208 LSGGQ++R+ IAR+LV P +LLDE + +D + + + D AS+G Sbjct: 482 LVGER--GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKASKG 538 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 ++ H + I D+ ++ G ++ GT E+I + Sbjct: 539 RTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGGI 580 Score = 82.2 bits (203), Expect = 1e-16 Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 31/225 (13%) Query: 38 VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRR 97 V V+ + L ++ G+ V L+GP+G+GK+T ++ D+G +KIDG DI + + + Sbjct: 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNL-KW 1061 Query: 98 ARLGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKKKR-H-------EKLDSLL 143 R I + QE +F G T+ ENI + E+ E K H + D+ + Sbjct: 1062 LRKQIGLVSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRV 1120 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 E + LSGGQ++R+ IAR+++ P +LLDE + +D + + + Sbjct: 1121 GERGV---------QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDR 1171 Query: 204 LASRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEII 246 I+I H + T+ D ++ G V+ GT E++ Sbjct: 1172 AMEGRTTIVIA----HRLSTIQNADVIAVLKNGKVVEQGTHDELL 1212 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 117 bits (294), Expect = 3e-27 Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 27/238 (11%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 S + V++ + L + PGE V ++G +G+GK+T ++ GL G I +D Sbjct: 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR-------HE- 137 G D+ + + R + Y+ Q+ +F G ++ ENI ++ HE Sbjct: 534 GVDLNDIDLASLRRQ-VGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEF 591 Query: 138 ------KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 D+ + E LSGGQR+RL +AR+L+S P +LLDE + +DP Sbjct: 592 IENLPMGYDTPVGEGGAN---------LSGGQRQRLALARALLSKPKILLLDEATSALDP 642 Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 + I + + I+I + DR ++ G ++ G+ +E++ Sbjct: 643 ETEAIILQNLLQILQGRTVIIIAHR--LSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 117 bits (295), Expect = 4e-27 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 36/214 (16%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL--ICADSGSIKIDGND 88 L ++KGV+L +K GE+ L+GPNG+GK+T + G G I G D Sbjct: 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65 Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148 IT +P RARLGI Q G+ + L+ N Sbjct: 66 ITDLPPEERARLGIFLAFQYPPEIPGVKNAD----------------------FLRYVNE 103 Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRG 208 SGG+++R EI + L+ P +LDEP +G+D A+ + +I L G Sbjct: 104 G---------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEG 154 Query: 209 IGILITDHNVHEILTLI--DRAYIIHAGGVLAHG 240 +LI H +L I DR ++++ G ++ G Sbjct: 155 KSVLIITHY-QRLLDYIKPDRVHVLYDGRIVKSG 187 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 117 bits (294), Expect = 4e-27 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 10/217 (4%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 ++TK++ +V + ++L + GE V LLGP+G GKTT M+ GL SG I I G D+ Sbjct: 5 NVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV 64 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 T +P R I+ + Q +++ +TV +NI L++ + K + E++ + + I Sbjct: 65 TDLPPKDR---DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE 121 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208 LSGGQR+R+ + R++V P L+DEP + +D + ++ L R G Sbjct: 122 HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG 181 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + H+ E +T+ DR V+ G +Q+I Sbjct: 182 TTTIYVTHDQVEAMTMADRI------AVMNDGQIQQI 212 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 116 bits (293), Expect = 5e-27 Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 4/197 (2%) Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104 DL GEI ++GP+G+GK+T ++ G SG + I+G D+T P R +S Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP---VSM 74 Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164 L QE ++F LTVE+N+ L K + + ++ L + L LSGG+R Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGER 134 Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILT 223 +R+ +AR LV +LLDEPFA +DP +++ L+ DL A + +L+ H + Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 Query: 224 LIDRAYIIHAGGVLAHG 240 L R + G + A G Sbjct: 195 LAQRVVFLDNGRIAAQG 211 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 116 bits (292), Expect = 5e-27 Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 8/222 (3%) Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92 KK V V L V+ GEI ++G +G+GK+T ++ LI G I +DG DI K+ Sbjct: 36 KKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKL 95 Query: 93 PM-----YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN 147 RR ++ + + Q ++ TV EN+ LEV K +R E+ L+ Sbjct: 96 SAAELRELRRKKISMVF--QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVG 153 Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207 + + LSGG ++R+ +AR+L + P +L+DE F+ +DP+ +++ + +L ++ Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213 Query: 208 -GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 I+ H++ E L + DR I+ G ++ GT +EI+ N Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 115 bits (291), Expect = 1e-26 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 51/214 (23%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L +TK++ V + GV L V+ GE+ LLG NGAGK+T +++GL DSG I +D Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G +++ R GI+ + Q Sbjct: 61 GKEVSFASPRDARRAGIAMVYQ-------------------------------------- 82 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 LS G+R+ +EIAR+L ++LDEP A + P + + +IR L Sbjct: 83 -------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAH 239 ++G+ ++ H + E+ + DR ++ G V+ Sbjct: 130 AQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 115 bits (290), Expect = 1e-26 Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 12/217 (5%) Query: 32 TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD---SGSIKIDGND 88 ++ V L+V+ G+++ +LG +G+GKTT ++G + SG I +G Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73 Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENIL--AVLEVYEKDKKKRHEKL--DSLLK 144 + ++Y+ Q+ + GLTV E + A+L + K +K D LL+ Sbjct: 74 RKPDQFQKC----VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR 129 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 + +T+ L +SGG+RRR+ IA L+ P ++LDEP +G+D ++ + L Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189 Query: 205 ASRGIGILITDHNVH-EILTLIDRAYIIHAGGVLAHG 240 A R +++T H ++ L DR ++ +G ++ G Sbjct: 190 ARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 115 bits (289), Expect = 1e-26 Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 9/209 (4%) Query: 32 TKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 +K Y ++ V ++ GE V L GP+GAGK+T ++ G G I ++G+D++ Sbjct: 8 SKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS 67 Query: 91 KM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 ++ P RR ++G+ + Q+ + TV EN+ L V K ++ ++ +L Sbjct: 68 RLKGREIPFLRR-QIGVVF--QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDL 124 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + L LSGG+++R+ IAR++V+ P+ +L DEP +DP +I L ++ Sbjct: 125 VGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAG 234 G +L+ H++ + + R + G Sbjct: 185 RLGTTVLMATHDLELVNRMRHRVLALEDG 213 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 113 bits (285), Expect = 4e-26 Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 9/239 (3%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 ++ A +L+ ++ GV L ++PGE++ +LGPNGAGK+T ++G + DSG + + Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSL 142 +G + P AR + LPQ +S+ TV+E + + + ++ Sbjct: 61 NGVPLNSWPPEELARH-RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119 Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSL------VSFPSYILLDEPFAGVDPVAISD 196 L +++ LSGG+++R+++AR L V ++ LDEP + +D Sbjct: 120 LAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH 179 Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 L R LA G +L H+++ DR ++H G V+A G+ Q+++ ++ + R+Y Sbjct: 180 TLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVY 238 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 113 bits (284), Expect = 5e-26 Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 2/213 (0%) Query: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP 93 K S+ V+ + + GEIVG LG NGAGK+T M+TGL+ SG ++++G D + Sbjct: 33 KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR 92 Query: 94 MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153 +G+ + Q+ ++ L +++ + +YE + E+LD L + ++ + Sbjct: 93 EEYLRSIGLV-MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK 151 Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGIL 212 LS GQR R E+A +L+ P + LDEP G+D A ++I +++ R +L Sbjct: 152 WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 +T H +I TL DR +I G ++ GT+ ++ Sbjct: 212 LTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 113 bits (283), Expect = 7e-26 Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 7/210 (3%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 +S SL+ + ++ V L + GE+V +LGP+G GKTT ++ G + GSI+++ Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G I P R G+ + Q ++ L V +N+ L++ +K +R E +L Sbjct: 66 GRRIEG-PGAER---GVVF--QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLAL 119 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + H LSGG R+R+ IAR+L P +LLDEPF +D + + L+ DL Sbjct: 120 VGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW 179 Query: 206 SR-GIGILITDHNVHEILTLIDRAYIIHAG 234 G +L+ H++ E L L R ++ G Sbjct: 180 QETGKQVLLITHDIEEALFLATRLVVLSPG 209 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 112 bits (283), Expect = 7e-26 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 16/235 (6%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKI 84 S V V GV +K GEI+G++G +G+GK+ + GL+ G I Sbjct: 10 SFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILF 69 Query: 85 DGNDITKMPMYRRARL---GISYLPQEA--SIFRGLTVEENILAVLEVYEK--DKKKRHE 137 DG D+ + ++ I+ + Q+ S+ +T+ + I VL ++ K KK+ E Sbjct: 70 DGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE 129 Query: 138 KLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194 + LL+ I L LSGG R+R+ IA +L P ++ DEP +D Sbjct: 130 RAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189 Query: 195 SDIHVLIRDLAS-RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + I L+++L +G +++ H++ + + DR +++AG ++ G V+EI N Sbjct: 190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 111 bits (280), Expect = 1e-25 Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 12/201 (5%) Query: 47 YVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRRARL 100 + E+ G+ G +GAGK+T + GL D G+I ++G D K +P +R Sbjct: 19 FDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR--- 75 Query: 101 GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLS 160 I + Q+ ++F L V EN+ L+ + + +D LL + + LS Sbjct: 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR--ISVDELLDLLGLDHLLNRYPAQLS 133 Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVH 219 GG+++R+ +AR+L + P +LLDEPF+ +D + ++ + I ++ H++ Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 Query: 220 EILTLIDRAYIIHAGGVLAHG 240 E L DR ++ G + G Sbjct: 194 EAEYLADRIVVMEDGRLQYIG 214 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 111 bits (278), Expect = 3e-25 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 36/204 (17%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI--CADSGSIKIDGNDITKMPMYRR 97 ++K V KPGE+ ++GP+GAGK+T + G SG + I+G + K + Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157 I Y+PQ+ + LTV E ++ + L+ Sbjct: 84 ----IGYVPQDDILHPTLTVRETLMFAAK----------------LRG------------ 111 Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217 LSGG+R+R+ IA LVS PS + LDEP +G+D + + L+R LA G I+ + H Sbjct: 112 -LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 Query: 218 V-HEILTLIDRAYIIHAGGVLAHG 240 EI L D+ ++ G V+ G Sbjct: 171 PSSEIFELFDKLLLLSQGRVIYFG 194 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 110 bits (276), Expect = 4e-25 Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 9/198 (4%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 ++ + L + GEI+ L G NGAGKTT ++ GLI SGSI ++G I + Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS-- 72 Query: 100 LGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158 I Y+ Q+ +V E +L L K+ +E+ +++LK+ ++ + Sbjct: 73 --IGYVMQDVDYQLFTDSVREELLLGL----KELDAGNEQAETVLKDLDLYALKERHPLS 126 Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218 LSGGQ++RL IA +L+S ++ DEP +G+D + + LIR+LA++G +++ H+ Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY 186 Query: 219 HEILTLIDRAYIIHAGGV 236 + + DR ++ G + Sbjct: 187 EFLAKVCDRVLLLANGAI 204 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 109 bits (274), Expect = 8e-25 Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 4/228 (1%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 ++K Y + V+ V L + G I ++GPNGAGK+T MM+ L+ DSG I IDG ++T Sbjct: 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT 66 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDK--KKRHEKLDSLLKEFNI 148 P A+ +S L QE I LTV + + Y + + K+ ++ ++ ++ Sbjct: 67 STPSKELAKK-LSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL 125 Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR- 207 LSGGQR+R IA L Y+LLDEP +D I ++R LA Sbjct: 126 EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185 Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 G I++ H+++ D + G V+ G+ EII + + +Y Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 107 bits (269), Expect = 4e-24 Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 22/256 (8%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI-- 75 K + L Y + +K ++L + ++ L+GP+G GK+T M LI Sbjct: 3 MKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG 62 Query: 76 CADSGSIKIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDK 132 G + +DG +I + R R+G+ + Q+ + F +++ +N+ L ++ Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF--QKPNPF-PMSIYDNVAYGLRLHGIKD 119 Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPF 186 K+ E ++S LK+ + W V L LSGGQ++RL IAR+L P +L+DEP Sbjct: 120 KELDEIVESSLKKAAL--WDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 Query: 187 AGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 + +DP++ I LI +L + I+I HN+ + + D + G ++ G +I Sbjct: 178 SALDPISTLKIEELITELKKK-YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 Query: 247 DNQDVRRL--YLGDRF 260 N +R Y+ RF Sbjct: 237 TNPKHKRTEDYISGRF 252 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 106 bits (267), Expect = 5e-24 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L L K+Y V+KGV L G+++ ++G +G+GK+TF + L +GSI+++ Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66 Query: 86 GNDITKMP------------MYRRARLGISYLPQEASIFRGLTVEENIL-AVLEVYEKDK 132 G +I +R R + + Q +++ +TV EN++ A + V K Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126 Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 + E+ + L + I + LSGGQ++R+ IAR+L P +L DEP + +DP Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE 186 Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252 + ++ +++DLA G +++ H + + +H G + G +++ N Sbjct: 187 LVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSP 246 Query: 253 RL 254 RL Sbjct: 247 RL 248 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 105 bits (264), Expect = 1e-23 Identities = 53/193 (27%), Positives = 105/193 (54%), Gaps = 9/193 (4%) Query: 31 LTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 +TK Y N + G+++ + GE V L+GP+GAGK+T ++ SG+I+++G D+ Sbjct: 6 VTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDV 65 Query: 90 TKM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 + + P RR ++G+ + Q+ + V EN+ LEV ++ +++ + L+ Sbjct: 66 SDLRGRAIPYLRR-KIGVVF--QDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALE 122 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 ++ L LSGG+++R+ IAR++V+ P+ ++ DEP +DP +I L++ + Sbjct: 123 LVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI 182 Query: 205 ASRGIGILITDHN 217 G +++ H Sbjct: 183 NKAGTTVVVATHA 195 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 105 bits (263), Expect = 1e-23 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 9/230 (3%) Query: 22 KDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81 + L+ +++ + N ++ + V PGE ++GPNGAGKTT ++TG SG Sbjct: 28 NEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD 87 Query: 82 IKIDGNDITKMPMYR--RARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKD-KKK 134 + + G K R R+G+ TV + +L A + +Y++D + Sbjct: 88 VTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAE 147 Query: 135 RHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194 LL+ LS G++RR+ IAR+LV P ++LDEP G+D +A Sbjct: 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207 Query: 195 SDIHVLIRDLASR--GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTV 242 + + +LA+ +L H+ EI ++ G V+A G + Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 105 bits (263), Expect = 2e-23 Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 16/258 (6%) Query: 11 EMPEFQENRASKDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFF 68 E+ E A+ L +++ Y +K +L + GE V +LG +G+GK+T Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381 Query: 69 YMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEV 127 ++ G GSI ++G +I + + R IS L Q +F G T+ +N+ LA + Sbjct: 382 QLLAGAWDPQQGSITLNGVEIASLDE-QALRETISVLTQRVHLFSG-TLRDNLRLANPDA 439 Query: 128 YEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYIL 181 +++ +++ L++ + + L LSGG+RRRL +AR+L+ L Sbjct: 440 SDEELWAALQQVG--LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497 Query: 182 LDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241 LDEP G+DP+ + L+ + A G +L+ H + L +DR ++ G ++ GT Sbjct: 498 LDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG-LERMDRIIVLDNGKIIEEGT 555 Query: 242 VQEIIDNQD-VRRLYLGD 258 E++ N +RLY D Sbjct: 556 HAELLANNGRYKRLYQLD 573 >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 104 bits (262), Expect = 2e-23 Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 22/220 (10%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98 ++KG+ ++ GE +G++GP+G+GK+T ++ G+ SGS+++DG D+ + + R Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ---WDRE 406 Query: 99 RLG--ISYLPQEASIFRGLTVEENILAVLE------VYEKDKKKR-HEKLDSLLKEFNIT 149 +LG I YLPQ+ +F G T+ ENI E V E + HE + L + ++ Sbjct: 407 QLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT- 464 Query: 150 KWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 + LSGGQR+R+ +AR+L P ++LDEP + +D + + I + Sbjct: 465 ----RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA 520 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 RG +++ H L +D+ ++ G + A G +E++ Sbjct: 521 RGGTVVVIAHRP-SALASVDKILVLQDGRIAAFGPREEVL 559 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 103 bits (259), Expect = 5e-23 Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 65 TTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAV 124 +T ++TGL+ SG+I +DG D T + + R I + Q+ +F LTV EN+ Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLF-- 58 Query: 125 LEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLD 183 + K+ + + L+ + + LSGGQ++R+ IAR+L+ P +LLD Sbjct: 59 ---FGLRDKEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLLD 115 Query: 184 EPFA 187 EP A Sbjct: 116 EPTA 119 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 103 bits (258), Expect = 6e-23 Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 8/221 (3%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 + ++L +K G++ L+G +GAGK+T ++ G + G I+++G D+ + R Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP-EAWR 394 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL---- 155 IS++ Q +F G T+ ENIL ++ LL+ + Sbjct: 395 KQISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEG 453 Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215 LSGGQ +RL +AR+L+S S +LLDEP A +D I +++LA + ++IT Sbjct: 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT- 512 Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYL 256 H + + DR ++ G ++ GT +E+ + Q + L Sbjct: 513 HRLEDAADA-DRIVVLDNGRLVEQGTHEELSEKQGLYANLL 552 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 102 bits (256), Expect = 9e-23 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 47/237 (19%) Query: 22 KDSLLSACSLTKKYNS---------VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT 72 + LL +L K + V V GV +K GE +GL+G +G GK+T ++ Sbjct: 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60 Query: 73 GLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDK 132 GL SG I +G DITK+ R E +L +LE Sbjct: 61 GLEEPTSGEILFEGKDITKLSKEER--------------------RERVLELLEKVG--- 97 Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 L E + ++ H LSGGQR+R+ IAR+L P I+ DEP + +D Sbjct: 98 ----------LPEEFLYRYPH----ELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143 Query: 193 AISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + I L++DL G+ L H++ + + DR +++ G ++ G +E+ N Sbjct: 144 VQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 102 bits (255), Expect = 1e-22 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 15/229 (6%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 L + + + V G+ L ++ G+ +GL+G +G+GK+T + LI G I+ DG DI Sbjct: 293 LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDID 351 Query: 91 -----KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLL 143 +M RR R+ + + S+ +TV + I L V+E +R +++ L Sbjct: 352 GLSRKEMRPLRR-RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410 Query: 144 KEFNI---TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200 +E + T+ R+ SGGQR+R+ IAR+L+ P ILLDEP + +D + + L Sbjct: 411 EEVGLDPATRNRY--PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL 468 Query: 201 IRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 +RDL G+ L H++ + L R ++ G ++ G + + N Sbjct: 469 LRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517 Score = 88.0 bits (218), Expect = 2e-18 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 19/248 (7%) Query: 21 SKDSLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI- 75 LLS +L+ ++ V VKG+ ++ GE + L+G +G+GK+ + GL+ Sbjct: 2 MTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP 61 Query: 76 ----CADSGSIKIDGNDITKMPMYRRARLG---ISYLPQEA--SIFRGLTVEENILAVLE 126 SGSI DG D+ + + I + QE S+ T+ + + VL Sbjct: 62 SPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR 121 Query: 127 VYEK-DKKKRHEKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILL 182 ++ + + LL+ I + L LSGGQR+R+ IA +L + P ++ Sbjct: 122 LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181 Query: 183 DEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241 DEP +D + I L+++L + G+ IL H++ + DR Y++ G ++ GT Sbjct: 182 DEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241 Query: 242 VQEIIDNQ 249 + + Sbjct: 242 TETLFAAP 249 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 102 bits (255), Expect = 1e-22 Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 27/215 (12%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 + V L ++ GE V ++G G+GK+T ++ GL SGS+ +DG DI ++ R Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP-ADLR 77 Query: 100 LGISYLPQEASIFRGLTVEENIL---------AVLEVYE----KDKKKRHEK-LDSLLKE 145 I Y+PQ+ ++F G T+ +NI +L E D +H LD + E Sbjct: 78 RNIGYVPQDVTLFYG-TLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGE 136 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 LSGGQR+ + +AR+L++ P +LLDEP + +D + + +R L Sbjct: 137 RGRG---------LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 I+IT +L L+DR ++ +G ++A G Sbjct: 188 GDKTLIIITHRPS--LLDLVDRIIVMDSGRIVADG 220 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 101 bits (254), Expect = 1e-22 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 5/192 (2%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 +L A +L+ + + + + GE + + GPNGAGKTT ++ GL+ D+G + Sbjct: 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYW 61 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 G I + + YL + I LT EN+ + + L Sbjct: 62 QGEPIQNVR--ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA---ATIWEALA 116 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 + + + LS GQ+RR+ +AR +S +LDEPF +D ++ + L+ Sbjct: 117 QVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176 Query: 205 ASRGIGILITDH 216 A++G +L+T H Sbjct: 177 AAQGGIVLLTTH 188 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 101 bits (254), Expect = 2e-22 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 44/214 (20%) Query: 26 LSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 L +++ +Y V++ V ++PGE + ++GP+G+GK+T ++ GL+ SG ++ Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 Query: 84 IDGNDITKM-PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 +DG DI++ P +G YLPQ+ +F G ++ ENI Sbjct: 61 LDGADISQWDPNELGDHVG--YLPQDDELFSG-SIAENI--------------------- 96 Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 LSGGQR+RL +AR+L P ++LDEP + +D ++ I Sbjct: 97 ----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140 Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236 L + G ++ H E L DR ++ G V Sbjct: 141 ALKAAGATRIVIAHRP-ETLASADRILVLEDGRV 173 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 101 bits (253), Expect = 2e-22 Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%) Query: 53 IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRRARLGISYLP 106 I L GP+G+GKT+ M+ GL D G I+++G D K +P +R I Y+ Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR---IGYVF 82 Query: 107 QEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRR 166 Q+A +F TV N+ + K + D L+ I LSGG+++R Sbjct: 83 QDARLFPHYTVRGNLRYGM------WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQR 136 Query: 167 LEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLI 225 + I R+L++ P +L+DEP A +D +I + L I IL H++ E+L L Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196 Query: 226 DRAYIIHAGGVLAHGTVQEIIDNQDVR 252 DR ++ G V A G ++E+ + D Sbjct: 197 DRVVVLENGKVKASGPLEEVWGSPDFP 223 >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 101 bits (253), Expect = 2e-22 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 12/227 (5%) Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95 V+K + ++PGE V ++GP+G+GK+T ++ L SG I IDG DI + Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS-L 398 Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155 R I + Q+ +F G T+ ENI ++ + KL + EF Sbjct: 399 DSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKL-ANAHEFIANLPDGYD 456 Query: 156 APL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209 + LSGGQR+RL IAR+L+ P ++LDE + +D + I ++ L Sbjct: 457 TIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRT 516 Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV-RRLY 255 ++I H + I DR ++ G ++ GT +E++ + RLY Sbjct: 517 TLIIA-HRLSTIKNA-DRIIVLDNGRIVERGTHEELLAKGGLYARLY 561 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 99.3 bits (247), Expect = 1e-21 Identities = 53/201 (26%), Positives = 102/201 (50%), Gaps = 8/201 (3%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD---SGS 81 +L +++ + ++ V+ + GEIV L+GP+G GK+T M G + +G Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61 Query: 82 IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS 141 + ++ + +P +R ++GI L Q+A +F L+V +N+L L K +R ++ Sbjct: 62 LWLNEQRLDMLPAAQR-QIGI--LFQDALLFPHLSVGQNLLFALPATLKGNARR-NAANA 117 Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 L+ + H LSGGQR R+ + R+L++ P +LLDEPF+ +D + Sbjct: 118 ALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 Query: 202 -RDLASRGIGILITDHNVHEI 221 ++ + GI + H++ ++ Sbjct: 178 FSEVRAAGIPTVQVTHDLQDV 198 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 98.3 bits (245), Expect = 2e-21 Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 23/220 (10%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+K ++ +KPGE V ++GP GAGKTT ++ G I IDG DI + R Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK-SLR 76 Query: 100 LGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKK--KRHEKLDSLLKEFNITKWR 152 I + Q+ +F G T+ ENI A E + K H+ + L ++ Sbjct: 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYD----- 130 Query: 153 HVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209 VL LS G+R+ L IAR+++ P ++LDE + +D I + L Sbjct: 131 TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRT 190 Query: 210 GILITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEIID 247 I+I H + T+ D+ ++ G ++ GT E++ Sbjct: 191 SIIIA----HRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 97.3 bits (242), Expect = 4e-21 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 28/229 (12%) Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95 N V+KG+ +KPGE VG++G GAGK++ + L+ G I IDG DI+K+ ++ Sbjct: 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLH 1210 Query: 96 R-RARLGISYLPQEASIFRGLTVEENI------------LAVLEVYEKDK-KKRHEKLDS 141 R+RL I +PQ+ +F G TV N+ A+ KD LDS Sbjct: 1211 DLRSRLSI--IPQDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDS 1267 Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 + E + S GQR+ L +AR+L+ ++LDE A VDP + I I Sbjct: 1268 EVSE-GGENF--------SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 1318 Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 R+ + +L H ++ ++ DR ++ AG V+ + E++ ++D Sbjct: 1319 RE-EFKDCTVLTIAHRLNTVMDS-DRVLVLDAGRVVEFDSPAELLSDKD 1365 Score = 93.8 bits (233), Expect = 5e-20 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 45/268 (16%) Query: 1 MKSIRNYLGIEMPEFQENRASKDSLLSAC------SLT-KKYNSVYVVKGVDLYVKPGEI 53 +K ++ +L E + S D S + + +K ++ +K G++ Sbjct: 490 LKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQL 549 Query: 54 VGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFR 113 V ++GP G+GK++ + G + SGS+ ++G ++Y+PQ+ I Sbjct: 550 VAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--------------SVAYVPQQPWIQN 595 Query: 114 GLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------------LSG 161 G TV ENIL Y++++ + K +L K+ I P LSG Sbjct: 596 G-TVRENILFGSP-YDEERYDKVIKACALKKDLEIL-------PFGDLTEIGERGINLSG 646 Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASRGIGILITDHNVHE 220 GQ++R+ +AR++ LLD+P + VD V IR L IL+T H + Sbjct: 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVT-HQLQ- 704 Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 L D+ ++ G ++ GT +E++ + Sbjct: 705 FLPHADQIIVLKDGKIVESGTYEELLKS 732 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 97.1 bits (242), Expect = 4e-21 Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 34/229 (14%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 SL + N V+K + +KPGE VG++G G+GK++ + L+ SGSI IDG DI Sbjct: 9 SLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68 Query: 90 TKMPMYR-RARLGISYLPQEASIFRGLTVEENI--------LAVLEVYEKDKKKRH---- 136 +K+ ++ R+R+ I +PQ+ +F G T+ N+ + + E+ K Sbjct: 69 SKIGLHDLRSRISI--IPQDPVLFSG-TIRSNLDPFGEYSDEELWQALERVGLKEFVESL 125 Query: 137 -EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 LD++++E LS GQR+ L +AR+L+ ++LDE A VDP + Sbjct: 126 PGGLDTVVEEGGEN---------LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244 I IR+ A + +L H + T+ID I+ VL G V E Sbjct: 177 LIQKTIRE-AFKDCTVLTIAHRLD---TIIDSDRIL----VLDKGRVVE 217 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 97.0 bits (241), Expect = 4e-21 Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 12/220 (5%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN--D 88 + Y + + + L GE + LLGP+GAGK++ ++ L SG++ I GN D Sbjct: 8 INCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD 67 Query: 89 ITKMP---MYRRARLGISYLPQEASIFRGLTVEENILA----VLEVYEKDKKKRHEKLDS 141 +K P R R + + Q+ +++ LTV+EN++ VL + + R EKL Sbjct: 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKL-- 125 Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 LK + + LSGGQ++R+ IAR+L+ P +L DEP A +DP + I +I Sbjct: 126 -LKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184 Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241 ++LA GI +I H V R + G ++ G Sbjct: 185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 96.9 bits (241), Expect = 5e-21 Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 44/225 (19%) Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 S+++ +L+ Y +++ V L + PGE +GL+G NGAGK+T ++ G + DSG + Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61 Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL--------------AVLEVYE 129 L + YL QE + TV + ++ + Sbjct: 62 RPKG------------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109 Query: 130 KDKKKRHEKLDSLLKEFNITKWRH----VLAPL-----------LSGGQRRRLEIARSLV 174 + +L++LL+E + L L LSGG RRR+ +AR+L+ Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169 Query: 175 SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219 P +LLDEP +D +I L L +++ H+ + Sbjct: 170 EEPDLLLLDEPTNHLDLESIE---WLEDYLKRYPGTVIVVSHDRY 211 Score = 91.5 bits (227), Expect = 2e-19 Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 24/237 (10%) Query: 19 RASKDSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77 + +L +++K Y ++K + + G+ + ++GPNGAGK+T ++ G + Sbjct: 315 KRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP 374 Query: 78 DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137 SG++K+ + I Y Q L ++ +L L D ++ Sbjct: 375 LSGTVKV------------GETVKIGYFDQHRD---ELDPDKTVLEELSEGFPDGDEQE- 418 Query: 138 KLDSLLKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 + + L F T P+ LSGG++ RL +A+ L+ P+ +LLDEP +D ++ Sbjct: 419 -VRAYLGRFGFTG-EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE 476 Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252 + + D +L+ H+ + + + R +++ G ++ ++ + R Sbjct: 477 ALEEALLDFEG---TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 93.8 bits (233), Expect = 4e-20 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 12/209 (5%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 + G+ L + G+ V ++G NGAGK+T + G + SG I IDG D+TK + +RA Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 Query: 100 LGISYLPQ--EASIFRGLTVEENILAVLEVYEKD------KKKRHEKLDSLLKEFNITKW 151 L ++ + Q A LT+EEN+ +K ++R L + Sbjct: 81 L-LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139 Query: 152 RHVLAP--LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASRG 208 + LLSGGQR+ L + + + P +LLDE A +DP A + + + + Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVL 237 + L+ HN+ + L +R ++H+G ++ Sbjct: 200 LTTLMVTHNMEDALDYGNRLIMLHSGKIV 228 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 92.9 bits (231), Expect = 9e-20 Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 25/228 (10%) Query: 19 RASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD 78 +S L + + +K V V GE +GL+G NGAGK+T ++ G+ D Sbjct: 16 GSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD 75 Query: 79 SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRG-LTVEENILAVLEVYEKDKKKRHE 137 SG++ + G +S L F LT ENI + +K+ E Sbjct: 76 SGTVTVRGR--------------VSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE 121 Query: 138 KLD-----SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 K+D S L +F + S G + RL A + P +L+DE A D Sbjct: 122 KIDEIIEFSELGDFIDLPVKT-----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176 Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 +R+L +G +++ H+ I L DRA ++ G + G Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 92.6 bits (230), Expect = 1e-19 Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 13/229 (5%) Query: 19 RASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD 78 + K L +K + +K + + GE VG++G NGAGK+T ++ G+ Sbjct: 21 YSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT 80 Query: 79 SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138 SG +K+ G + P+ LG + P+ LT ENI + +K+ EK Sbjct: 81 SGKVKVTG-KVA--PLI---ELGAGFDPE-------LTGRENIYLRGLILGLTRKEIDEK 127 Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 +D +++ + + S G RL + + P +LLDE A D Sbjct: 128 VDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 + +L + I++ H++ I DRA + G + G+ +E+I Sbjct: 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 91.0 bits (226), Expect = 3e-19 Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 17/217 (7%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK--MPMYRR 97 V+K V + G+ V ++GP+G+GK+T ++ SGSI IDG DI + + RR Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 Query: 98 ARLGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKKKR-HEKLDSLLKEFNITK 150 A I +PQ+ +F T+ NI EV E K + H+K+ ++ Sbjct: 76 A---IGVVPQDTVLFND-TIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 L LSGG+++R+ IAR+++ P +LLDE + +D +I +RD++ Sbjct: 132 GERGL--KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTT 189 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 I+I H + I+ D+ ++ G ++ GT +E++ Sbjct: 190 IVIA-HRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 91.0 bits (226), Expect = 3e-19 Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 13/219 (5%) Query: 38 VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRR 97 V ++KG+ L + PG+ V L+G +G GK+T ++ SG I +DG DI + + R Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL-RW 74 Query: 98 ARLGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKKKR--HEKLDSLLKEFNITK 150 R I + QE +F G T+ ENI A E E+ KK H+ + SL ++ Sbjct: 75 LRSQIGLVSQEPVLFDG-TIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 LSGGQ++R+ IAR+L+ P +LLDE + +D + + + D A +G Sbjct: 134 GER--GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL-DRAMKGRT 190 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 ++ H + I D ++ G V+ GT E++ + Sbjct: 191 TIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELMAQK 228 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 90.4 bits (224), Expect = 4e-19 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 10/192 (5%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L A LT + + + G+ + GE + + GPNG+GKTT ++ GL +G + ++ Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60 Query: 86 GN-DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 G + R G+ YL I L+V EN L + D E+++ L Sbjct: 61 GGPLDFQRDSIAR---GLLYLGHAPGIKTTLSVLEN----LRFWHADHSD--EQVEEALA 111 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 + + LS GQ+RR+ +AR L+S +LDEP +D ++ + Sbjct: 112 RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171 Query: 205 ASRGIGILITDH 216 +RG +++T H Sbjct: 172 CARGGMVVLTTH 183 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 90.3 bits (224), Expect = 5e-19 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 15/226 (6%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+KGV + GE V ++G NG+GK+T ++ SGSI IDG DI ++ + R Sbjct: 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-DYSGSILIDGQDIKEVSL-ESLR 424 Query: 100 LGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKK-KRHEKLDSLLKEFNITKWR 152 I +PQ++ +F T+ NI + EV E K+ H+ + L + Sbjct: 425 QSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGE 483 Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 L LSGG+++R+ +AR+ + +LLDE + +D +I +I D+ S I+ Sbjct: 484 RGLM--LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM 541 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII-DNQDVRRLYLG 257 I H ++L D+ ++ G V +GT E++ ++ L+ Sbjct: 542 IV-HR-LDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 90.4 bits (224), Expect = 5e-19 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 25/227 (11%) Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMY 95 V V+K + ++PGE+V L+GP+G+GK+T ++ SG I +DG I+ + Y Sbjct: 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539 Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL---DSLLKEFNITKWR 152 R + I + QE +F G ++ ENI L+ ++ + K+ + F + Sbjct: 540 LRRK--IGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFP-DGYN 595 Query: 153 HVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV---LIRDLAS 206 V+ LSGGQ++R+ IAR+L+ P ++LDE + +D A S+ V L R + Sbjct: 596 TVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALD--AESEYLVQEALDRLMQG 653 Query: 207 RGIGILITDHNVHEILTLIDRA---YIIHAGGVLAHGTVQEIIDNQD 250 R + ++I L+ + A +I G V+ GT E++ + Sbjct: 654 RTV-LVIAHR-----LSTVRHADQIVVIDKGRVVEMGTHDELLSKPN 694 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 87.8 bits (217), Expect = 3e-18 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 14/215 (6%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107 V+ GEI+ L+GPNGAGK+T M G+ SGSI+ G + AR +YL Q Sbjct: 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHR-AYLSQ 79 Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRL 167 + + + V L +++ DK R E L+ + + LSGG+ +R+ Sbjct: 80 QQTPPFAMPV----WHYLTLHQPDKT-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 134 Query: 168 EIARSLVSF-----PS--YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220 +A ++ P+ +LLDEP +D S + L+ L +G+ I+++ H+++ Sbjct: 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH 194 Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 L RA+++ G +LA G +E++ + + Y Sbjct: 195 TLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAY 229 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 87.4 bits (217), Expect = 3e-18 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 39/217 (17%) Query: 32 TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK 91 + + + + +K ++L V GE+V ++GP G+GK++ + G + SGS+ + G Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----- 66 Query: 92 MPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW 151 I+Y+ QE I G T+ ENIL + +++++ ++ K +L + I Sbjct: 67 ---------SIAYVSQEPWIQNG-TIRENIL-FGKPFDEERYEKVIKACALEPDLEIL-- 113 Query: 152 RHVLAPL------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI-- 197 P LSGGQ++R+ +AR++ S LLD+P + VD I Sbjct: 114 -----PDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168 Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234 + ++ L + IL+T H + +L D+ ++ G Sbjct: 169 NCILGLLLNNKTRILVT-HQLQ-LLPHADQIVVLDNG 203 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 87.3 bits (216), Expect = 4e-18 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 4/185 (2%) Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR 96 + ++KGV+L VK GE V ++GP+G+GK+T ++ GL SG +++ G + K+ Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA 81 Query: 97 RARL---GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153 RA L + ++ Q + LT EN+ LE+ + +LL+ + K Sbjct: 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT 141 Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGIL 212 LSGG+++R+ +AR+ P + DEP +D I L+ L RG ++ Sbjct: 142 HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201 Query: 213 ITDHN 217 + H+ Sbjct: 202 LVTHD 206 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 87.0 bits (215), Expect = 5e-18 Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 19/221 (8%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98 V+ + V+PG+ V L+GP+GAGK+T ++ +SGSI IDG DI + R+ Sbjct: 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 Query: 99 RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKR-HEKLDSLLKEFNITKW 151 +G+ +PQ+ +F T+ NI + EVY K + H+++ + +N Sbjct: 613 SIGV--VPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211 L LSGG+++R+ IAR+++ PS ILLDE + +D I + L + I Sbjct: 670 ERGLK--LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTI 727 Query: 212 LITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEIIDNQD 250 ++ H + T++ D +I G ++ G +E++ Sbjct: 728 VVA----HRLSTIVNADLILVISNGRIVERGRHEELLKRDG 764 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 86.9 bits (215), Expect = 5e-18 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 20/203 (9%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+K V VK GE +G++G GAGK+T + + A+ G I+IDG DI+ +P+ R Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL-EDLR 81 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158 ++ +PQ+ ++F G T+ N L+ + E ++ + L N Sbjct: 82 SSLTIIPQDPTLFSG-TIRSN----LDPFDEYSDEEIYGALRVSEGGLN----------- 125 Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218 LS GQR+ L +AR+L+ P ++LDE A +D + I IR+ + IL H + Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT-NSTILTIAHRL 184 Query: 219 HEILTLIDRAYIIHAGGVLAHGT 241 I+ D+ ++ AG V + Sbjct: 185 RTIIDY-DKILVMDAGEVKEYDH 206 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 86.0 bits (213), Expect = 9e-18 Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 35/226 (15%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT--KMPMYRR 97 V++ + L + GE V L+GP+G+GK+T ++ DSG I IDG+D+ + RR Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 Query: 98 ARLGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKKKRH---------EKLDSLL 143 I + Q+ +F TV ENI A E E+ + + E D+++ Sbjct: 77 Q---IGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVI 132 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 E + LSGGQR+R+ IAR+L+ P ++LDE + +D + + + Sbjct: 133 GERGVK---------LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183 Query: 204 LASRGIGILITDHNVHEILTL--IDRAYIIHAGGVLAHGTVQEIID 247 L +I H + T+ DR ++ G ++ GT +E++ Sbjct: 184 LMKNRTTFVIA----HRLSTIENADRIVVLEDGKIVERGTHEELLA 225 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 84.2 bits (208), Expect = 3e-17 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 15/207 (7%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGNDITKMPMYRR 97 ++ V KPG + L+G +GAGKTT ++ G G I I G + R Sbjct: 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARV 865 Query: 98 ARLGISYLPQEASIFRGLTVEENIL--AVL-EVYEKDKKKRHEKLDSLLKEFNITKWRHV 154 Y+ Q+ LTV E++ A L E ++++E ++ +++ + ++ Sbjct: 866 ----SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADA 921 Query: 155 LAPL----LSGGQRRRLEIARSLVSFPSYIL-LDEPFAGVDPVAISDIHVLIRDLASRGI 209 L L LS QR+RL I LV+ PS IL LDEP +G+D A + + +R LA G Sbjct: 922 LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQ 981 Query: 210 GILITDHNVH-EILTLIDRAYIIHAGG 235 IL T H +I D ++ GG Sbjct: 982 TILCTIHQPSIDIFEAFDELLLLKRGG 1008 Score = 78.4 bits (193), Expect = 2e-15 Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 26/228 (11%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG-----LICADSGSIKIDGNDITKMPM 94 ++K + +KPGE+ +LGP G+GKTT + G L SG I +G+D+ + Sbjct: 130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKS--SGEITYNGHDLKEF-- 185 Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEV----YEKDKKKRHEKL----DSLLKEF 146 + ++Y ++ F LTV E + D+ R EKL D LLK Sbjct: 186 --VPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL 243 Query: 147 NI-----TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 + T + + +SGG+R+R+ I LV S + DE G+D I + Sbjct: 244 GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKAL 303 Query: 202 RDLA--SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 R LA + ++ EI L D ++ G + G E++ Sbjct: 304 RQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 83.5 bits (206), Expect = 6e-17 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 15/226 (6%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 LL + ++ + L V+ GE + + GP+G GK+T ++ LI SG++ Sbjct: 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62 Query: 85 DGNDIT--KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 +G D++ K YR+ +SY Q ++F G TVE+N+ + ++++ L Sbjct: 63 EGEDVSTLKPEAYRQQ---VSYCAQTPALF-GDTVEDNL--IFPWQIRNRRPDRAAALDL 116 Query: 143 LKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200 L F + + + LSGG+++R+ + R+L P +LLDE + +D +I + Sbjct: 117 LARFALPD-SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175 Query: 201 I-RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 I R + + + +L H+ + + D+ + G G +QE Sbjct: 176 IHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 82.3 bits (203), Expect = 1e-16 Identities = 55/222 (24%), Positives = 112/222 (50%), Gaps = 15/222 (6%) Query: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI-TKM 92 K + ++ + L +KPGE+VG++G +G+GK+T ++ ++G + +DG+D+ Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD 70 Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDK-KKRHEKLDSLLKE 145 P + R ++G + QE +F ++ +NI +++ V E K H+ + L + Sbjct: 71 PAWLRRQVG--VVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEG 127 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 ++ LSGGQR+R+ IAR+L+ P ++ DE + +D + I + D+ Sbjct: 128 YDTIVGEQGAG--LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI- 184 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 G ++I H + + DR ++ G ++ G+ E++ Sbjct: 185 CAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLA 225 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 79.7 bits (197), Expect = 8e-16 Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 66/210 (31%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 + +L+K Y ++K + L + PG+ +GL+G NGAGK+T ++ G + D G + Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 + I Y Q Sbjct: 61 ST------------VKIGYFEQ-------------------------------------- 70 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 LSGG++ RL +A+ L+ P+ +LLDEP +D +I L L Sbjct: 71 -------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIE---ALEEALK 114 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGG 235 +++ H+ + + + + + G Sbjct: 115 EYPGTVILVSHDRYFLDQVATKIIELEDGK 144 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 78.4 bits (193), Expect = 2e-15 Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 19/240 (7%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 LLS L+K Y + V + PGE++G++G +G+GKTT ++G + D+G++ Sbjct: 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65 Query: 85 DGN-----DITKMPMYRRARL-----GISYL-PQEA---SIFRGLTVEENILAVLEVYEK 130 D+ M R RL G + P++ + G + E ++A+ + Sbjct: 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG 125 Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 + R E D L+E I R P SGG ++RL+IAR+LV+ P + +DEP G+ Sbjct: 126 NI--RAEAQD-WLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 182 Query: 190 DPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 D + + L+R L G+ ++I H++ L DR ++ G V+ G ++D+ Sbjct: 183 DVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDD 242 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 77.9 bits (192), Expect = 3e-15 Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 43/210 (20%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 S + V+K + L +K GE + LLG +G+GK+T ++TG + G I +DG + Sbjct: 7 SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV 66 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 + + + IS L Q +F T+ N Sbjct: 67 SDLEKALSSL--ISVLNQRPYLFDT-TLRNN----------------------------- 94 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209 L SGG+R+RL +AR L+ +LLDEP G+DP+ + LI ++ Sbjct: 95 -----LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT 149 Query: 210 GILITDH-----NVHEILTLIDRAYIIHAG 234 I IT H ++ +IL ++ II G Sbjct: 150 LIWITHHLTGIEHMDKIL-FLENGKIIMQG 178 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 76.5 bits (188), Expect = 6e-15 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V++ V + PGE+ L+GP+G+GK+T ++ G + +DG I Y Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI---SQYEHKY 85 Query: 100 L--GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK---LDSLLKEFNITKWRHV 154 L +S + QE +F ++++NI L+ + K + S + E V Sbjct: 86 LHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEV 144 Query: 155 --LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 LSGGQ++R+ IAR+L+ P ++LDE + +D + + + D R ++ Sbjct: 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLV 204 Query: 213 ITDHNVHEILTLIDRAYII 231 I L+ ++RA I Sbjct: 205 IAHR-----LSTVERADQI 218 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 76.4 bits (188), Expect = 7e-15 Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 43/202 (21%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM-----TGLICADSGSIKIDGNDITKMPM 94 ++ + YVKPG + L+G +GAGKTT ++ G+I +G I I+G + K Sbjct: 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKN-- 76 Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154 ++R Y+ Q+ LTV E + +LL+ Sbjct: 77 FQR---STGYVEQQDVHSPNLTVREALR----------------FSALLRG--------- 108 Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILIT 214 LS QR+RL I L + PS + LDEP +G+D A +I ++ LA G IL T Sbjct: 109 ----LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164 Query: 215 DHN-VHEILTLIDRAYIIHAGG 235 H I DR ++ GG Sbjct: 165 IHQPSASIFEKFDRLLLLKRGG 186 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 74.3 bits (182), Expect = 3e-14 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 21/234 (8%) Query: 31 LTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88 LT KY V++ + + PG+ VGLLG G+GK+T L+ + G I+IDG Sbjct: 8 LTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVS 66 Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK------LDSL 142 +P+ ++ R +PQ+ IF G T +N L+ Y K + K L S+ Sbjct: 67 WNSVPL-QKWRKAFGVIPQKVFIFSG-TFRKN----LDPYGKWSDEEIWKVAEEVGLKSV 120 Query: 143 LKEFNITKWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 +++F + VL +LS G ++ + +ARS++S +LLDEP A +DP+ I Sbjct: 121 IEQFP-GQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253 ++ A +++++H + +L R +I V + ++Q++++ + + Sbjct: 180 TLKQ-AFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNEKSHFK 231 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 73.3 bits (180), Expect = 6e-14 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 24/221 (10%) Query: 10 IEMPEFQENRAS-KDSLLSACSLTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTF 67 IE E +D+L+ L K Y V+ ++Y GE++G+LGPNG GKTTF Sbjct: 326 IEFEEKPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGEIYD--GEVIGILGPNGIGKTTF 383 Query: 68 FYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEV 127 ++ G+I D GS + L +SY PQ S TVE+ + + + Sbjct: 384 VKLLAGVIKPDEGSEE---------------DLKVSYKPQYISPDYDGTVEDLLRSAIRS 428 Query: 128 YEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187 + E ++K N+ LSGG+ +R+ IA +L LLDEP A Sbjct: 429 AFGSSYFKTE----IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484 Query: 188 GVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDR 227 +D + +IR + L+ DH+++ I + DR Sbjct: 485 YLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDR 525 Score = 56.0 bits (135), Expect = 1e-08 Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 28/213 (13%) Query: 39 YVVKGVDLY----VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM 94 Y V G LY +PG++VG+LGPNG GK+T ++ G + + G + + + Sbjct: 84 YGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKR 143 Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDK-------------KKRHE--KL 139 +R L + F+ L E + AV + D KK E K Sbjct: 144 FRGTELQ--------NYFKKL-YEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKF 194 Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 D +++ + LSGG+ +R+ IA +L+ DEP + +D + Sbjct: 195 DEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIH 232 +IR+LA G +++ +H++ + L D +I++ Sbjct: 255 VIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 72.0 bits (176), Expect = 2e-13 Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 40/224 (17%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+K ++L ++ GE++ + G G+GKT+ ++ G + G IK G Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ 99 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEV-------------YEKDKKKRHEKLDSLLKEF 146 IS+ Q + I G T++ENI+ + E+D K EK +++L E Sbjct: 100 --ISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI-HVLIRDLA 205 IT LSGGQR R+ +AR++ LLD PF +D +I + L Sbjct: 157 GIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 + IL+T H L D+ I+H G +GT E+ + Sbjct: 208 ANKTRILVTSKMEH--LKKADKILILHEGSSYFYGTFSELQSLR 249 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 71.5 bits (175), Expect = 2e-13 Identities = 51/218 (23%), Positives = 107/218 (49%), Gaps = 10/218 (4%) Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95 +V VK V ++ G+ + ++G NG+GK+T M+ G+I SG I I+ + + Sbjct: 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLE-----VYEKDKKKRHEKLDSLLKEFNITK 150 R++ I + Q+ + L I +L+ + + ++R +++ L+ + Sbjct: 84 FRSKR-IRMIFQDPNT--SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP 140 Query: 151 WRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208 P +L+ GQ++R+ +AR+L+ P I+ DE A +D S + L+ +L + G Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 I + ++ I + D+ ++H G V+ G+ +++ Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 70.8 bits (173), Expect = 4e-13 Identities = 48/206 (23%), Positives = 79/206 (38%), Gaps = 26/206 (12%) Query: 42 KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLG 101 K ++ + V L+GPNGAGK+T ++TG + G + R + Sbjct: 407 KKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS------------RHSHNK 454 Query: 102 ISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLLKEFNITKWRHVLAPL- 158 + Q + L + LE +K E++ S+L F +T + P+ Sbjct: 455 LPRYNQHLAEQLDLD-----KSSLEFMMPKFPDEKELEEMRSILGRFGLTG-DAQVVPMS 508 Query: 159 -LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI----LI 213 LS GQRRR+ AR V P +LLDEP +D I + I + + + + Sbjct: 509 QLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRL 568 Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAH 239 EI + G + + Sbjct: 569 ISQVAEEIWVCENGTVTKWDGDIEIY 594 Score = 70.4 bits (172), Expect = 5e-13 Identities = 46/181 (25%), Positives = 71/181 (39%), Gaps = 17/181 (9%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI----- 84 SL+ ++ V ++K V L + G GL+GPNG+GK+TF + G I Sbjct: 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 Query: 85 -----DGNDITKMPMYR-RARLGISYLPQEASIFR-GLTVEENILAVLEVYEKDKKKRHE 137 + + + M R + YL ++ + +E + E D Sbjct: 140 EIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEA 199 Query: 138 KLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194 K +L + LSGG R R +AR+L P +LLDEP +D AI Sbjct: 200 KAAKILHGLGFLS--EMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAI 257 Query: 195 S 195 Sbjct: 258 V 258 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 69.9 bits (171), Expect = 6e-13 Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 16/204 (7%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT--------- 90 V++ V L V GE V L GP+G+GK+T + D G I + Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 ++ RR +G Y+ Q + ++ + + L ++ K LL N+ + Sbjct: 86 EVLEVRRTTIG--YVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE 143 Query: 151 WRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209 LAP SGG+++R+ IAR + +LLDEP A +D + + LIR+ +RG Sbjct: 144 RLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGA 203 Query: 210 GIL--ITDHNVHEILTLIDRAYII 231 ++ D V E + DR + Sbjct: 204 ALVGIFHDEEVRE--AVADRLLDV 225 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 69.8 bits (171), Expect = 7e-13 Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 32/214 (14%) Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG----ND 88 K + + ++K VKPGE+V +LG G+G +T + G++ ++G N Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT---EGNVSVEGDIHYNG 71 Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148 I + I Y+ +E F LTV E + L K +E + Sbjct: 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC------KGNEFVRG------- 118 Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA--S 206 +SGG+R+R+ IA +LVS S + D G+D +I IR +A Sbjct: 119 ----------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL 168 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 + + EI L D+ +++ G + +G Sbjct: 169 KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 69.1 bits (169), Expect = 1e-12 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 19/213 (8%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98 ++ G+ + G+ V ++G +GAGK+T ++ +SGSI IDG DI + + Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI-RDVTQQSL 335 Query: 99 RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKK-KRHEKLDSLLKEFNITKW 151 R I +PQ+ +F T+ NI EV + + H+ + SL + ++ Sbjct: 336 RRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211 L LSGG+++R+ IAR+++ P ++LDE + +D I +R++++ + Sbjct: 395 ERGL--KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452 Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244 +I H + T+ID II VL +G + E Sbjct: 453 VIA----HRLSTIIDADEII----VLDNGRIVE 477 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 68.8 bits (168), Expect = 1e-12 Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 34/189 (17%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107 + E++G+LGPNG GKTTF M+ G++ D G I+I+ + +SY PQ Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT-------------VSYKPQ 68 Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRL 167 TV + + ++ + + + E + K I + P LSGG+ +R+ Sbjct: 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTE----IAKPLQIEQILDREVPELSGGELQRV 124 Query: 168 EIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI---------GILITDHNV 218 IA L LLDEP A +D V R +AS+ I + +H++ Sbjct: 125 AIAACLSKDADIYLLDEPSAYLD--------VEQRLMASKVIRRFAENNEKTAFVVEHDI 176 Query: 219 HEILTLIDR 227 I L DR Sbjct: 177 IMIDYLADR 185 >gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 257 Score = 65.1 bits (158), Expect = 2e-11 Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 34/228 (14%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98 V+K V Y+KPG+ VG+ G G+GK++ ++ G I IDG DI+K+P++ R+ Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158 RL I + Q+ +F G ++ N+ D + + D L + I + ++++ L Sbjct: 96 RLSI--ILQDPILFSG-SIRFNL---------DPECKCTD-DRLWEALEIAQLKNMVKSL 142 Query: 159 LSG--------------GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI--HVLIR 202 G GQR+ +AR+ V S +++DE A +D +A +I V++ Sbjct: 143 PGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVVMT 201 Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 A R ++ H V IL D ++ G ++ T + ++ +D Sbjct: 202 AFADR--TVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQED 246 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 61.4 bits (149), Expect = 2e-10 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 21/169 (12%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI-DGNDITKMP----M 94 ++ ++ V+PGE + + G +GAGKT+ + GL SG I + + + +P + Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYL 467 Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154 + P A F + ++AVL K L L E +W V Sbjct: 468 PQGTLREALCYPNAAPDFS----DAELVAVL------HKVGLGDLAERLDE--EDRWDRV 515 Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 L SGG+++RL AR L+ P ++ LDE + +D ++ L+++ Sbjct: 516 L----SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 61.5 bits (149), Expect = 2e-10 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 32/198 (16%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103 ++L +K GE+V L+G NG+GK+T ++TGL SG I +DG ++ Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS------------- 388 Query: 104 YLPQEASIFRGL--TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT-----KWRHVLA 156 ++ +R L V + ++ + K + ++ L+ + Sbjct: 389 --AEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN 446 Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI-HVLIRDLASRGIGILITD 215 LS GQ++RL + +L+ ++LDE A DP + VL+ L +G I Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506 Query: 216 HNVHEILTLIDRAYIIHA 233 H D Y IHA Sbjct: 507 H---------DDHYFIHA 515 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 61.3 bits (149), Expect = 2e-10 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 46/177 (25%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 ++K + +KPG+ + + GP+G GK++ F + GL SG I MP Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG--------MP----EG 63 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159 + +LPQ + G L+E I W VL Sbjct: 64 EDLLFLPQRPYLPLGT---------------------------LREQLIYPWDDVL---- 92 Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216 SGG+++RL AR L+ P ++ LDE + +D + ++ L+++ GI ++ H Sbjct: 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE---LGITVISVGH 146 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 57.3 bits (138), Expect = 4e-09 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 33/187 (17%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI--------CADSGSIKIDGNDIT 90 YV++ ++L +KPG++V ++G +GAGKTT M+ G DSG +++ N ++ Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456 Query: 91 KMPMYRRARLGISYLPQE-ASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 + +P E F +T+ E++ + ++ L + Sbjct: 457 AL------------IPGEYEPEFGEVTILEHL-------RSKTGDLNAAVEILNRAGLSD 497 Query: 150 KWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI----SDIHVLIRDL 204 + LS GQ+ R ++A+ L P+ +L+DE A +D + I L R+ Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557 Query: 205 ASRGIGI 211 I + Sbjct: 558 GITLIVV 564 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 56.2 bits (136), Expect = 9e-09 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 23/213 (10%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG-----LI 75 +L +L N ++KG++L + GEI ++GPNG+GK+T ++ G ++ Sbjct: 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL 62 Query: 76 CADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135 G I G I + RA LGI Q G++ + + K K + Sbjct: 63 ---EGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYN--SKRKFQG 117 Query: 136 HEKLDSLLKEFNITKWRHVLAPL------------LSGGQRRRLEIARSLVSFPSYILLD 183 +LD L+ I + L + SGG+++R EI + + +LD Sbjct: 118 LPELDP-LEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILD 176 Query: 184 EPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216 E +G+D A+ I I L + I++ H Sbjct: 177 ETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 54.2 bits (130), Expect = 4e-08 Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 38/225 (16%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 ++ +L + G GL+G NG GK+T + +G + + A Sbjct: 95 LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIA------NGQVSGFHVEQEVRGDDTEAL 148 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA-PL 158 S L + L E+ +LA L E D +L T + Sbjct: 149 --QSVLESDTERLDFLAEEKELLAGLT--------LEEIYDKILAGLGFTPEMQLQPTKS 198 Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218 LSGG R RL +AR+L + P +LLDEP +D VA++ L L + I LI H Sbjct: 199 LSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVA---WLENYLQTWKITSLIVSH-- 253 Query: 219 HEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR-RLYLGDRFAF 262 DR ++ +II ++++ Y G+ F Sbjct: 254 -------DRNFLNT--------VCTDIIHLENLKLDYYKGNYSQF 283 Score = 46.9 bits (111), Expect = 6e-06 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 24/214 (11%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 +S + + K + L + + +G NG GK+T ++ G + G + Sbjct: 365 ISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV--- 421 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR-HEKLDSLLK 144 R RL I Y Q F V ++ EK + E++ L Sbjct: 422 ---------GRHPRLRIKYFAQHHVDFLDKNV-----NAVDFMEKSFPGKTEEEIRRHLG 467 Query: 145 EFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 F ++ L + LSGGQ+ R+ A + P ++LDEP +D + L + Sbjct: 468 SFGLSG-ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD---RDSLGALAK 523 Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236 L + G+++ H+ I +L +++ G V Sbjct: 524 ALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKV 557 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 52.8 bits (126), Expect = 1e-07 Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 21/177 (11%) Query: 42 KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLG 101 K +D + + ++GPNG GK+T ++ G + + G ++ + RL Sbjct: 604 KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR------------KNHRLR 651 Query: 102 ISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA-PLLS 160 I + Q A+ L EE +E ++ +++ L F + H + LS Sbjct: 652 IGWFDQHAN--EALNGEE---TPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLS 706 Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217 GGQ+ R+ +A + P ++LDEP +D +I + I + G+++ H+ Sbjct: 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNG---GVIMVSHD 760 Score = 43.2 bits (101), Expect = 8e-05 Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 25/170 (14%) Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI-------KIDGNDITKMPMYRR 97 L + G GL+GPNG GKTT + A +I ++ + + + + Sbjct: 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157 A L +E + E + A + K+ ++L ++ + + R +LA Sbjct: 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERL-----KEVADELRAIGADSAEARARRILAG 398 Query: 158 L-------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194 L SGG R R+ +AR+L P+ ++LDEP +D A+ Sbjct: 399 LGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAV 448 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 52.3 bits (125), Expect = 1e-07 Identities = 55/249 (22%), Positives = 109/249 (43%), Gaps = 29/249 (11%) Query: 25 LLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 LL +LT ++ + V V V + + GEI GL+G +G+GK+ + G + D+ Sbjct: 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICG-VNKDNW 61 Query: 81 SI-----KIDGNDITKMPMYRRARL---GISYLPQEA------SIFRGLTVEENILAVLE 126 + + D D+ ++ R +L +S + QE S G + +NI A Sbjct: 62 RVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPA--W 119 Query: 127 VYEKDKKK----RHEKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSY 179 Y+ + R + LL I + ++ L+ G+ +++ IA +L + P Sbjct: 120 TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRL 179 Query: 180 ILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLA 238 ++ DEP ++P + I L+ L + IL+ H++ I D+ +++ G + Sbjct: 180 LIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239 Query: 239 HGTVQEIID 247 +E++ Sbjct: 240 SAPSEELVT 248 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 52.0 bits (124), Expect = 2e-07 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 23/206 (11%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI---KIDGNDITKMPMYRRARL 100 +++ + G++ ++G G GK++ + G + G + + ++ + R R Sbjct: 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 Query: 101 GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW--------R 152 ++Y Q+ + TVEENI + K + K SL + ++ + R Sbjct: 80 SVAYAAQKPWLLNA-TVEENIT-FGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGER 137 Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 + LSGGQR+R+ +AR+L + + LD+PF+ +D + +SD L GI Sbjct: 138 GIN---LSGGQRQRICVARALYQNTNIVFLDDPFSALD-IHLSD------HLMQEGILKF 187 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLA 238 + D +L Y+ HA ++A Sbjct: 188 LQDDKRTLVLVTHKLQYLPHADWIIA 213 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 51.9 bits (124), Expect = 2e-07 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 26/187 (13%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 +V + ++PG + + GPNG GK++ F ++ GL +G + + R Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNG----------LLSIPRPNN 546 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNI-------TKW 151 I Y+PQ + G T+ + I+ + K K + L+++L ++ W Sbjct: 547 --IFYIPQRPYMSGG-TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGW 603 Query: 152 RHVL--APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209 V +LSGG+++R+ +AR P Y LLDE + V I +D GI Sbjct: 604 DAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA---GI 660 Query: 210 GILITDH 216 +L H Sbjct: 661 SLLSITH 667 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 49.9 bits (119), Expect = 7e-07 Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 26/187 (13%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGI----- 102 + G+++GL+GPNG GK+T ++ G + + G + + +R + L Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 Query: 103 -----------SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW 151 Y+ +G V E + KK KLD L+ + + Sbjct: 83 LEGDVKVIVKPQYVDLIPKAVKG-KVGELL---------KKKDERGKLDELVDQLELRHV 132 Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211 LSGG+ +R+ IA +L + DEP + +D + LIR+LA + Sbjct: 133 LDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192 Query: 212 LITDHNV 218 L+ +H++ Sbjct: 193 LVVEHDL 199 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 48.1 bits (114), Expect = 2e-06 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 62/186 (33%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107 VK GE++G++GPNG GKTT ++ G + + + + D + Y PQ Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD-------------GITPVYKPQ 68 Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRL 167 LSGG+ +R+ Sbjct: 69 YID------------------------------------------------LSGGELQRV 80 Query: 168 EIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI-GILITDHNVHEILTLID 226 IA +L+ ++ L DEP A +D + IR L+ G L+ +H++ + L D Sbjct: 81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD 140 Query: 227 RAYIIH 232 R ++ Sbjct: 141 RIHVFE 146 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 46.8 bits (111), Expect = 7e-06 Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 26/180 (14%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 SL+ N +++ + L V G+ + + GP+G GKT+ ++ GL + G + Sbjct: 435 EFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTK 494 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 + K + +LPQ + G T+ + ++ L+ + D K + + +L+ Sbjct: 495 PTDGGPK---------DLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASD--EDILR 542 Query: 145 EFNITKWRHVLAPL--------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 + H+L LS G+++RL AR P + +LDE + V Sbjct: 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT 602 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 45.8 bits (108), Expect = 1e-05 Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 23/173 (13%) Query: 56 LLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL----GISYLPQE--- 108 L+G NGAGKTT +++G G +++ G + L +SYL E Sbjct: 45 LVGANGAGKTTLLKILSGKHMVGGGVVQVLGRS-----AFHDTSLESSGDLSYLGGEWSK 99 Query: 109 ASIFRGLTVEENILAVLEV---YEKDKKKRHEKLDSLLKEFNITKWR-HVLAPLLSGGQR 164 G + ++ + D +R EKL +L + ++ +WR H + S GQR Sbjct: 100 TVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDIL-DIDL-RWRMHKV----SDGQR 153 Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISD-IHVLIRDLASRGIGILITDH 216 RR++I L+ +LLDE +D +A +D + L + RG I+ H Sbjct: 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH 206 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 42.9 bits (101), Expect = 8e-05 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 7/82 (8%) Query: 156 APLLSGGQRRRLEIARSLVS--FPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILI 213 LSGG+ +R+++A L S + +LDEP G+ I+ + +I+ L G +++ Sbjct: 85 LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144 Query: 214 TDHNVHEILTLIDRA-YIIHAG 234 +HN L ++ A +II G Sbjct: 145 IEHN----LDVLSSADWIIDFG 162 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 42.5 bits (100), Expect = 1e-04 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 34/198 (17%) Query: 76 CADSGSIKIDGN---------DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLE 126 C G IKI+ + ++ Y R L + Y + + +TVEE LE Sbjct: 736 CQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKGKNIADVLDMTVEE----ALE 791 Query: 127 VYEKDKKKRHEKLDSLLKEFNITKWRHVL---APLLSGGQRRRLEIARSL---VSFPSYI 180 +E K KL L + + + L A LSGG+ +R+++A+ L + + Sbjct: 792 FFE-AIPKIARKLQ-TLVDVGLGYIK--LGQPATTLSGGEAQRVKLAKELSKRSTGKTLY 847 Query: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYII-------HA 233 +LDEP G+ I + ++ L +G +++ +HN+ I T +II Sbjct: 848 ILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKT---ADWIIDLGPEGGDG 904 Query: 234 GG-VLAHGTVQEIIDNQD 250 GG ++A GT +E+ + Sbjct: 905 GGEIVASGTPEEVAKVKA 922 Score = 40.5 bits (95), Expect = 4e-04 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 19/108 (17%) Query: 156 APLLSGGQRRRLEIARSLVSFPSYIL--LDEPFAGVDPVAISDIHVLI---RDLASRGIG 210 A LSGG+ +R+ +A + S + +L LDEP G+ D LI + L G Sbjct: 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQ---RDNERLIETLKRLRDLGNT 535 Query: 211 ILITDHNVHEILT---LIDRAYI-----IHAGGVLAHGTVQEIIDNQD 250 +++ +H+ I +ID I H G ++A GT +E++ N + Sbjct: 536 VIVVEHDEDTIRAADHIID---IGPGAGEHGGEIVAEGTPEELLANPE 580 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 41.8 bits (98), Expect = 2e-04 Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 42/151 (27%) Query: 52 EIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASI 111 EI+ +LG NG GKTTF M+ G + D G +I + +SY PQ+ S Sbjct: 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLN--------VSYKPQKISP 413 Query: 112 FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------------L 159 R TV + + K R + V+ PL L Sbjct: 414 KREGTVRQLLH---------TKIRDAYMHPQFVN-------DVMKPLQIENIIDQEVQGL 457 Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 SGG+ +R+ +A L L+DEP A +D Sbjct: 458 SGGELQRVALALCLGKPADVYLIDEPSAYLD 488 Score = 37.2 bits (86), Expect = 0.004 Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 26/186 (13%) Query: 49 KPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR------------ 96 +PG+++GL+G NG GK+T ++ G + G + + +R Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157 Query: 97 ----RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152 +A + Y+ Q +G TV + D+K + + + + ++ Sbjct: 158 EDNLKAIIKPQYVDQIPRAVKG-TVGSLL---------DRKDERDNKEEVCDQLDLNNLL 207 Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 LSGG+ +R IA V + DEP + +D + IR L + I+ Sbjct: 208 DREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYII 267 Query: 213 ITDHNV 218 + +H++ Sbjct: 268 VVEHDL 273 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 41.0 bits (96), Expect = 3e-04 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 29/185 (15%) Query: 58 GPNGAGKTTFF----YMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFR 113 G NGAGKTT Y +TG + +S D I + L E + + Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE-----GEVRAQVKLAFENANGK 83 Query: 114 GLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRR------RL 167 T+ + L + E + + L + + SGG++ RL Sbjct: 84 KYTITRS----LAILENVIFCHQGESNWPLLD---------MRGRCSGGEKVLASLIIRL 130 Query: 168 EIARSLVSFPSYILLDEPFAGVDPVAISD-IHVLIRDLASRGIGILITDHNVHEILTLID 226 +A + S + LDEP +D I + + +I + S+ LI + E++ D Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190 Query: 227 RAYII 231 Y + Sbjct: 191 HIYRV 195 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 38.6 bits (90), Expect = 0.002 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 18/99 (18%) Query: 156 APLLSGGQRRRLEIARSLVSFPS-----YILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 A LSGG+ +R+++A+ L S S YIL DEP G+ + + +++ L +G Sbjct: 167 ATTLSGGEAQRIKLAKEL-SKRSTGKTLYIL-DEPTTGLHFHDVKKLLEVLQRLVDKGNT 224 Query: 211 ILITDHNVHEILTLIDRAYII--------HAGGVLAHGT 241 +++ +HN+ I +II G V+A GT Sbjct: 225 VVVIEHNLDVIKCA---DWIIDLGPEGGDGGGQVVASGT 260 >gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.. Length = 162 Score = 35.3 bits (81), Expect = 0.016 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 152 RHVLAPLLSGGQRRRLEIARSL----VSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207 LSGG++ +A L + +LDE G+DP + I + + Sbjct: 71 LIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 Query: 208 GIGILITDHNVHEILTLIDRAYII 231 G +++ H E+ L D+ I Sbjct: 131 GAQVIVITHL-PELAELADKLIHI 153 >gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 908 Score = 35.0 bits (80), Expect = 0.022 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Query: 159 LSGGQRR------RLEIARSLVSFPS--YILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 LSGG+R RL ++ L + LDEPF +D + + ++ +L S G Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875 Query: 211 ILITDHNVHEILTLIDRAYIIHAGG 235 I+I H V E+ D + G Sbjct: 876 IIIISH-VEELKERADVRIRVKKDG 899 Score = 27.3 bits (60), Expect = 4.0 Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 50 PGEIVGLLGPNGAGKTTFFYMMT 72 I ++GPNGAGK++ +T Sbjct: 24 DSGIFLIVGPNGAGKSSILDAIT 46 >gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 202 Score = 33.3 bits (76), Expect = 0.071 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 9/73 (12%) Query: 45 DLYVKPGEIVGLLGPNGAGKTTF---------FYMMTGLICADSGSIKIDGNDITKMPMY 95 D+ + G ++ + GPN GK+T+ + + A+S SI + T++ Sbjct: 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAE 82 Query: 96 RRARLGISYLPQE 108 G S E Sbjct: 83 DSISDGRSTFMAE 95 >gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226 Score = 32.8 bits (75), Expect = 0.11 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 13/95 (13%) Query: 156 APLLSGGQRRRLEIARSLVSFPSYIL--LDEPFAGVDPVAISDIHVLIRDLASRGIGILI 213 AP LSGG+ +R+ +A + S + +L LDEP G+ P + ++ L G +L+ Sbjct: 135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLV 194 Query: 214 TDHNVHEILTLIDRAYII--------HAGGVLAHG 240 +H+ + + D ++I H G ++A G Sbjct: 195 VEHD-EDTIRAAD--HVIDIGPGAGVHGGEIVAQG 226 >gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion]. Length = 407 Score = 30.7 bits (69), Expect = 0.42 Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 45 DLYVKPGEIVGLLGPNGAGKTT 66 +L V+ ++ L+GP G GKTT Sbjct: 197 NLIVEQKRVIALVGPTGVGKTT 218 >gnl|CDD|133255 cd00879, Sar1, Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 190 Score = 30.3 bits (69), Expect = 0.52 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71 V+ + LY K +I+ LG + AGKTT +M+ Sbjct: 9 VLSSLGLYNKEAKIL-FLGLDNAGKTTLLHML 39 >gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop. Length = 123 Score = 30.3 bits (69), Expect = 0.60 Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 49 KPGEIVGLLGPNGAGKTTF 67 K G++V L G GAGKTTF Sbjct: 13 KAGDVVLLSGDLGAGKTTF 31 >gnl|CDD|37584 KOG2373, KOG2373, KOG2373, Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]. Length = 514 Score = 30.0 bits (67), Expect = 0.61 Identities = 12/19 (63%), Positives = 15/19 (78%) Query: 49 KPGEIVGLLGPNGAGKTTF 67 +PGE+ L GP G+GKTTF Sbjct: 271 RPGELTVLTGPTGSGKTTF 289 >gnl|CDD|73039 cd03280, ABC_MutS2, MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 200 Score = 30.2 bits (68), Expect = 0.63 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 174 VSFPSYILLDEPFAGVDPVAISDIHV-LIRDLASRGIGILITDH 216 S +LLDE +G DPV + + + ++ +L RG ++ T H Sbjct: 106 ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTH 149 >gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 203 Score = 30.0 bits (68), Expect = 0.65 Identities = 8/14 (57%), Positives = 10/14 (71%) Query: 56 LLGPNGAGKTTFFY 69 LLGP+ +GKT F Sbjct: 5 LLGPSDSGKTALFT 18 >gnl|CDD|35463 KOG0242, KOG0242, KOG0242, Kinesin-like protein [Cytoskeleton]. Length = 675 Score = 30.1 bits (67), Expect = 0.70 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 16/117 (13%) Query: 57 LGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR---LGISYLP--QEASI 111 G G+GKT Y M+G D G I + DI + R + +SYL E I Sbjct: 93 YGQTGSGKT---YTMSG-SEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNER-I 147 Query: 112 FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLE 168 L + L + E + + L E ++ +L L G + R Sbjct: 148 RDLLNPDGGDLRLRE--DSEGGIVVPGL----TEETVSSREELLELLQKGNKNRTTG 198 >gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]. Length = 149 Score = 29.1 bits (65), Expect = 1.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 47 YVKPGEIVGLLGPNGAGKTTF 67 +K G++V L G GAGKTT Sbjct: 21 ALKAGDVVLLSGDLGAGKTTL 41 >gnl|CDD|31396 COG1203, COG1203, Predicted helicases [General function prediction only]. Length = 733 Score = 28.5 bits (63), Expect = 1.7 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 19/140 (13%) Query: 49 KPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP-------MYRRAR-- 99 K +V L P G GKT ++ + + IK+ I +P MYRRA+ Sbjct: 212 KRSLLVVLEAPTGYGKTEASLILALALLDE--KIKLKSRVIYVLPFRTIIEDMYRRAKEI 269 Query: 100 ---LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA 156 + +S L +E + +L + D K+ LL +T + ++ Sbjct: 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKK-----LLLALIVVTPIQILIF 324 Query: 157 PLLSGGQRRRLEIARSLVSF 176 + + SLV Sbjct: 325 SVKGFKFEFLALLLTSLVIL 344 >gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.. Length = 273 Score = 28.7 bits (64), Expect = 1.7 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 53 IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIF 112 I+G+ G +G GK+TF +T L +D ++ I +D + R GI+ L A+ F Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTV-ICLDDYHSLDRKGRKETGITALDPRANNF 59 >gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.. Length = 271 Score = 28.3 bits (63), Expect = 2.1 Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 49 KPGEIVGLLGPNGAGKTTF 67 + GE++ L G GKTTF Sbjct: 28 RKGELIILTAGTGVGKTTF 46 >gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.. Length = 150 Score = 28.3 bits (63), Expect = 2.3 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 13/105 (12%) Query: 53 IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS--------Y 104 I+ ++G +G+GK+T + + G+ IDG+D+ + GI + Sbjct: 1 IIVVMGVSGSGKST----VGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPW 56 Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 L V+ K+ + L + Sbjct: 57 LQALTDALLAKLASAGEGVVVAC-SALKRIYRDILRGGAANPRVR 100 >gnl|CDD|147288 pfam05028, PARG_cat, Poly (ADP-ribose) glycohydrolase (PARG). Poly(ADP-ribose) glycohydrolase (PARG), is a ubiquitously expressed exo- and endoglycohydrolase which mediates oxidative and excitotoxic neuronal death. Length = 339 Score = 28.0 bits (63), Expect = 3.0 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 24/82 (29%) Query: 173 LVSF--PSYILLDEPFAGVDPVAISDIHV----LIRDLASRGIGILITDHNVHEILTLID 226 VSF S LD P + + V LI D +G G L +D Sbjct: 118 CVSFERKSLSYLDAPLWKKSTTPLCPVEVFTDGLIED---QGQGALQ-----------VD 163 Query: 227 RA--YIIHAGGVLAHGTVQEII 246 A Y+ GGVL HG VQE I Sbjct: 164 FANKYL--GGGVLGHGCVQEEI 183 >gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction only]. Length = 233 Score = 28.0 bits (62), Expect = 3.0 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Query: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYI--IHAGGV 236 +LDEP A + P ++ ++RDLA G I+I H+ IL I A I I G+ Sbjct: 151 ILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS--PILLAIPGAEIYEISESGI 206 >gnl|CDD|35300 KOG0077, KOG0077, KOG0077, Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]. Length = 193 Score = 27.6 bits (61), Expect = 3.2 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71 V++ + LY K G+++ LG + AGKTT +M+ Sbjct: 10 VLQFLGLYKKFGKLL-FLGLDNAGKTTLLHML 40 >gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 Score = 27.9 bits (63), Expect = 3.3 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Query: 54 VGLLGPNGAGKTTFFYMM---TGLI 75 + L+G +G+GKTT + TG I Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAI 26 >gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]. Length = 178 Score = 27.5 bits (61), Expect = 3.3 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 56 LLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGL 115 +LGP GAGK+T + G +D DI + + R LG + I +G Sbjct: 5 ILGPPGAGKSTL----AKKLAKKLGLPHLDTGDILRAAIAERTELGEE---IKKYIDKGE 57 Query: 116 TVEENIL 122 V + I+ Sbjct: 58 LVPDEIV 64 >gnl|CDD|133254 cd00878, Arf_Arl, Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 Score = 27.5 bits (62), Expect = 3.5 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 3/19 (15%) Query: 53 IVGLLGPNGAGKTTFFYMM 71 I+GL +GAGKTT Y + Sbjct: 4 ILGL---DGAGKTTILYKL 19 >gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213 Score = 27.5 bits (61), Expect = 3.7 Identities = 8/25 (32%), Positives = 13/25 (52%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMT 72 + + + GP GAGK+T +T Sbjct: 25 LDNNGLFLICGPTGAGKSTILDAIT 49 >gnl|CDD|143957 pfam00199, Catalase, Catalase. Length = 383 Score = 27.6 bits (62), Expect = 3.8 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Query: 206 SRGIGILITDHNVHEILTLIDRAYI----IHAGGVLAHGT 241 RG +L+ D ++ E L DR I +HA G A GT Sbjct: 19 PRG-PLLLQDFHLIEKLAHFDRERIPERVVHAKGAGAFGT 57 >gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function unknown]. Length = 374 Score = 27.3 bits (60), Expect = 3.9 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 173 LVSFPSY-ILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEI--LTLIDRAY 229 L+ Y I+++ P A + P S + L+ +LA+RG+ +++ H+ H I L LI Sbjct: 256 LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHIINGLRLIVLEG 315 Query: 230 IIHAGGVLAHGTVQEIIDNQDVRRLYLGDRFAF 262 I LA + + V+++ + Sbjct: 316 KILTRNKLAVYLFKREGNGTIVKKIKINKEGIP 348 >gnl|CDD|30201 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).. Length = 179 Score = 27.6 bits (61), Expect = 3.9 Identities = 10/15 (66%), Positives = 14/15 (93%) Query: 53 IVGLLGPNGAGKTTF 67 +VG+ GP+G+GKTTF Sbjct: 1 VVGIAGPSGSGKTTF 15 >gnl|CDD|35104 COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only]. Length = 517 Score = 27.4 bits (60), Expect = 4.2 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG 73 + DS L+ +K + V + + K ++ L GP G+ K+TF + G Sbjct: 173 ASDSTLAR-QASKCFMVGAVARVLWPGAKVDFMLVLEGPQGSHKSTFLSELFG 224 >gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]. Length = 440 Score = 27.3 bits (60), Expect = 4.4 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 45 DLYVKPGEIVGLLGPNGAGKTT 66 D+ E ++GPNG+GKTT Sbjct: 18 DITFGESETTIIVGPNGSGKTT 39 >gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]. Length = 1163 Score = 27.3 bits (60), Expect = 4.5 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Query: 158 LLSGGQRRRLEIA-----RSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 LLSGG++ +A + P Y+L DE A +D + + LI++++ I+ Sbjct: 1066 LLSGGEKSLTALALLFAIQKYRPAPFYVL-DEVDAALDDANVERVARLIKEMSKETQFIV 1124 Query: 213 IT 214 IT Sbjct: 1125 IT 1126 >gnl|CDD|144151 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins. Length = 196 Score = 27.1 bits (61), Expect = 4.7 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 10/36 (27%) Query: 53 IVGLLGPNGAGKTT------FFYMM----TGLICAD 78 ++ L+G G+GKTT + L+ AD Sbjct: 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAAD 38 >gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein [Function unknown]. Length = 491 Score = 27.4 bits (60), Expect = 4.7 Identities = 7/21 (33%), Positives = 14/21 (66%) Query: 53 IVGLLGPNGAGKTTFFYMMTG 73 ++G+LG G+GK+T ++ Sbjct: 190 VIGVLGGQGSGKSTLLSLLAA 210 >gnl|CDD|30004 cd01394, radB, RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.. Length = 218 Score = 26.4 bits (58), Expect = 7.5 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 V+ G + + GP G GKT + + A G Sbjct: 16 VERGTVTQVYGPPGTGKTN-IAIQLAVETAGQG 47 >gnl|CDD|36564 KOG1350, KOG1350, KOG1350, F0F1-type ATP synthase, beta subunit [Energy production and conversion]. Length = 521 Score = 26.5 bits (58), Expect = 8.1 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 25/91 (27%) Query: 11 EMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDL---YVKPGEIVGLLGPNGAGKTTF 67 E PEF E ++ L++ +K VDL Y K G+I GL G G GKT Sbjct: 161 EAPEFVEMSVEQEILVTG------------IKVVDLLAPYAKGGKI-GLFGGAGVGKTVL 207 Query: 68 FYMMTGLICADSGSIKI---------DGNDI 89 + I G + +GND+ Sbjct: 208 IMELINNIAKAHGGYSVFAGVGERTREGNDL 238 >gnl|CDD|30719 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]. Length = 653 Score = 26.3 bits (58), Expect = 8.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Query: 54 VGLLGPNGAGKTTFFYMMTG 73 V L+G GKTT F +TG Sbjct: 6 VALVGNPNVGKTTLFNALTG 25 >gnl|CDD|34251 COG4632, EpsL, Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Carbohydrate transport and metabolism]. Length = 320 Score = 26.1 bits (57), Expect = 9.0 Identities = 8/42 (19%), Positives = 21/42 (50%) Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNG 61 +++ +LS + K+Y +V + + G+++G +G Sbjct: 121 TAREGVLSESEMAKRYRAVAAINASGFRMSNGKVMGFQISDG 162 >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.. Length = 349 Score = 26.4 bits (59), Expect = 9.5 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 7/43 (16%) Query: 29 CSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71 L KKY ++ L+V VG+ GP+G G F + Sbjct: 155 VDLAKKYGAI-------LFVDEAHSVGVYGPHGRGVEEFGGLT 190 >gnl|CDD|176167 cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Length = 199 Score = 26.1 bits (58), Expect = 9.9 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 18/96 (18%) Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 H+LAPL++ + R +I LVS I L E D+A R IG L Sbjct: 16 HLLAPLIAKFRERYPDIELELVSNEGIIDLIERKT---------------DVAIR-IGEL 59 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLA-HGTVQEIID 247 TD +H R I+ + LA HGT Q I D Sbjct: 60 -TDSTLHARPLGKSRLRILASPDYLARHGTPQSIED 94 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.141 0.406 Gapped Lambda K H 0.267 0.0729 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,213,772 Number of extensions: 175018 Number of successful extensions: 1171 Number of sequences better than 10.0: 1 Number of HSP's gapped: 945 Number of HSP's successfully gapped: 254 Length of query: 262 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 170 Effective length of database: 4,275,709 Effective search space: 726870530 Effective search space used: 726870530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.3 bits)