RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(262 letters)
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 264 bits (676), Expect = 2e-71
Identities = 122/238 (51%), Positives = 173/238 (72%), Gaps = 1/238 (0%)
Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
+ L+A +L K Y VV+ V L V GEIVGLLGPNGAGKTT FYM+ G++ D+G+I
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61
Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSL 142
ID DI+ +P++ RAR GI YLPQEASIFR L+V +N++AVL++ + ++R ++ + L
Sbjct: 62 IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL 121
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
++EF+I R + LSGG+RRR+EIAR+L + P +ILLDEPFAGVDP+++ DI +I
Sbjct: 122 MEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGDRF 260
L G+G+LITDHNV E L + +RAYI+ G ++AHGT EI+ ++ V+R+YLG+ F
Sbjct: 182 HLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDF 239
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 176 bits (448), Expect = 6e-45
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 10/219 (4%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+++GV L V GE+ +LG NG GKTT + GL+ SGSI++DG DITK+P + RAR
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL---LKEFNITKWRHVLA 156
GI+Y+PQ IF LTVEEN+L L + +K +++ L LKE
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEM-----LGRRG 129
Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITD 215
LSGGQ+++L IAR+LV+ P +LLDEP G+ P I DI +IR L + G+ IL+ +
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189
Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL 254
+ L DR Y++ G V+A G E +D VRR
Sbjct: 190 QYLDFARELADRYYVMERGRVVASGAGDE-LDEDKVRRY 227
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 167 bits (426), Expect = 2e-42
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 2/213 (0%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
K Y V GV+ V+ GE+ G LGPNGAGKTT M+T L+ SG+ ++ G D+ +
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
P R +GI +PQ AS+ LT EN+ + +Y K + E+ + LL+ F + +
Sbjct: 61 PRKVRRSIGI--VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
SGG RRRL+IA SL+ P + LDEP G+DP I IR L G+ IL
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+T H + E L DR II G ++A GT +E+
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 148 bits (377), Expect = 9e-37
Identities = 86/250 (34%), Positives = 138/250 (55%), Gaps = 16/250 (6%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
LLS L ++ + V V+L V+ EIV L+GPNGAGKTT F +TG G+I +
Sbjct: 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD------------K 132
G I +P ++ AR+G+ Q +FR +TV EN+L K +
Sbjct: 65 RGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFR 124
Query: 133 KKRHEKLDSL---LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
+ E LD L+ + + + A L+ GQ+RRLEIAR +V+ P ++LDEP AG+
Sbjct: 125 RAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184
Query: 190 DPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+P ++ LI +L + + +L+ +H++ ++ + DR Y+++ G LA+GT +EI +N
Sbjct: 185 NPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNN 244
Query: 249 QDVRRLYLGD 258
DV + YLG+
Sbjct: 245 PDVIKAYLGE 254
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 148 bits (376), Expect = 1e-36
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 4/231 (1%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L L+ Y + + V V+PGE V LLGPNGAGK+T F ++T L A G I +
Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G+D+ + P ARLG+ + Q+ ++ L+V +N+ ++ + + E++ +LL
Sbjct: 62 GHDLRRAPRAALARLGVVF--QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLAR 119
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ + L+GG RRR+EIAR+L+ P+ +LLDEP G+DP + + I +R L
Sbjct: 120 LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179
Query: 206 -SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
+G+ +L H V EI DR ++H G VLA G E+ L
Sbjct: 180 RDQGLSVLWATHLVDEI-EADDRLVVLHRGRVLADGAAAELRGALGGADLE 229
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 148 bits (375), Expect = 2e-36
Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 17/246 (6%)
Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
+L L+ ++ + + LYV PGE+ ++GPNGAGKTT ++TG D GS+
Sbjct: 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60
Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEV-YEKDK--------KK 134
G D+T +P ++ AR GI Q+ ++F LTV EN LE+ +DK +
Sbjct: 61 FGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFEN----LELALPRDKSVFASLFFRL 116
Query: 135 RHE---KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
E +++ +L+ + LA LLS GQ++ LEI L+ P +LLDEP AG+
Sbjct: 117 SAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTD 176
Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
L++ LA +++ +H++ + ++ D+ ++H G VLA G++ ++ + V
Sbjct: 177 EETEKTAELLKSLA-GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADPRV 235
Query: 252 RRLYLG 257
+YLG
Sbjct: 236 IEVYLG 241
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 138 bits (349), Expect = 1e-33
Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 3/234 (1%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+LS ++ Y + + V L++ GEIV L+G NGAGKTT + G A SG I
Sbjct: 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
DG DIT + R ++ +P+ +F +TVEEN+ + + ++ + E++ + +
Sbjct: 65 DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL--AMGGFFAERDQFQERIKWVYE 122
Query: 145 EF-NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
F + + R A +SGG+++ L I R+L+S P +LLDEP G+ P+ I I I
Sbjct: 123 LFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182
Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
L +G+ I + + N ++ L L DR Y++ G V+ T ++ N+ VR YLG
Sbjct: 183 LREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 136 bits (345), Expect = 5e-33
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 4/234 (1%)
Query: 16 QENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI 75
Q + + LL A S++K+Y+ V V+KG+D + GE+ LLG NGAGK+T ++ G++
Sbjct: 2 QTSDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61
Query: 76 CADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135
DSG+++I GN ++ + +LGI +PQE +F L+V+ENIL L + +
Sbjct: 62 PPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQ-- 119
Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
K+ LL A L R+ +EI R L+ ++LDEP A + P
Sbjct: 120 --KMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
+ IR+L ++G+GI+ H + EI L DR ++ G + G ++ +
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231
Score = 102 bits (257), Expect = 8e-23
Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 10/223 (4%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103
+ L V+ GEI+GL G GAG+T + GL A G I ++G +I + +R G+
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 104 YLP---QEASIFRGLTVEENILAVLE---VYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
YLP Q + ++ + N+ A+ + + + L+ + NI K+ H
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-KFNHAEQA 400
Query: 158 L--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215
LSGG ++++ IA+ L + P +++DEP GVD A +DI+ LIR +A++ + +L
Sbjct: 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460
Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGD 258
++ EI + DR ++H G ++ I+ + RL G+
Sbjct: 461 SDLEEIEQMADRVLVMH-QGEISGALTGAAINVDTIMRLAFGE 502
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 133 bits (337), Expect = 4e-32
Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 4/219 (1%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
++K++ S + V+L V G +V LLGP+G+GK+T ++ GL DSG I+++G D T
Sbjct: 6 ISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT 65
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
++ R I ++ Q ++F+ LTV +NI LE+ + K K +++ LL+ +
Sbjct: 66 RVHARDR---KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG 122
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GI 209
LSGGQR+R+ +AR+L P +LLDEPF +D ++ +R L +
Sbjct: 123 LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ H+ E + + DR ++ G + G+ E+ D+
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 133 bits (335), Expect = 6e-32
Identities = 83/235 (35%), Positives = 120/235 (51%), Gaps = 11/235 (4%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
++K Y VV G+ V GE GLLGPNGAGK+T M+ G+ D+G I + G
Sbjct: 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG--- 102
Query: 90 TKMPMYRRARL---GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
+P+ RARL I +PQ ++ TV EN+L + ++ + SLL+
Sbjct: 103 --VPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA 160
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
+ LSGG +RRL +AR+L++ P ++LDEP G+DP A I +R L +
Sbjct: 161 RLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 220
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGD 258
RG IL+T H + E L DR ++ AG +A G +ID V +Y GD
Sbjct: 221 RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGD 275
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 131 bits (332), Expect = 1e-31
Identities = 82/234 (35%), Positives = 121/234 (51%), Gaps = 5/234 (2%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
+ K+Y VV G+ +V+ GE GLLGPNGAGKTT M+ GL D+GSI + G +
Sbjct: 13 VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
+ R R+G+ +PQ ++ TV EN+L + + LL+ +
Sbjct: 73 SRARHARQRVGV--VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN 130
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
LSGG +RRL +AR+LV+ P ++LDEP G+DP A + +R L +RG
Sbjct: 131 KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKT 190
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGDRFA 261
IL+T H + E L DR +I G +A G +I+++ DV +Y D A
Sbjct: 191 ILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVA 244
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 127 bits (322), Expect = 2e-30
Identities = 65/216 (30%), Positives = 118/216 (54%), Gaps = 3/216 (1%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
SLTK Y + + V + G IVG LGPNGAGK+T ++TG + DSGS+++ G D+
Sbjct: 7 SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
+ P + I YLP+ ++ + V E + + +Y + ++++ +++ +
Sbjct: 67 LQNPK--EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR 124
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
+H LS G R+R+ +A++L+ P ++LDEP G+DP + +I +I+++
Sbjct: 125 PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
IL T H + E+ + DR II+ G ++A + E+
Sbjct: 185 IILST-HIMQEVEAICDRVIIINKGKIVADKKLDEL 219
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 127 bits (320), Expect = 4e-30
Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 4/220 (1%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
KK V DL + GEI ++G +G+GK+T M+ LI +G I IDG +I K
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 93 P---MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
+ R I + Q+ ++F +T+ +N E+ +++R EK LLK +
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRG 208
++ H LSGG ++R+ +AR+L + P +L+DE F+ +DP+ + ++ L A+
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
I+ H++ E + + DR I+ AG ++ GT EI+ N
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 123 bits (310), Expect = 4e-29
Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 5/231 (2%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
++K Y VV + + GE GLLGPNGAGK+T M+ G+I D G I + G +
Sbjct: 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
R +G+ +PQ ++ TV EN+L + ++ + SLL+ +
Sbjct: 70 SRARLARVAIGV--VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES 127
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
V LLSGG +RRL +AR+L++ P ++LDEP G+DP A I +R L +RG
Sbjct: 128 KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGD 258
IL+T H + E L DR ++ +G +A G +ID Q +V +Y GD
Sbjct: 188 ILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGD 238
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 122 bits (307), Expect = 9e-29
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 11/224 (4%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGN 87
L Y + V+ + L ++ GE++ L+G +G GKTT + G + A +G I I
Sbjct: 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69
Query: 88 DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN 147
D+T P ++R G++ L Q ++F L VE+N+ L + K E++ LK
Sbjct: 70 DLTHAPPHKR---GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVG 126
Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP----VAISDIHVLIRD 203
+ L LSGG ++R+ IAR++ P +LLDEP + +D +I L +
Sbjct: 127 LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186
Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
L + IL H+ + LTL D+A I+ G + AHG Q + D
Sbjct: 187 LPE--LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 122 bits (308), Expect = 9e-29
Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 19/240 (7%)
Query: 31 LTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
L+K Y + +K ++L + PGE V ++GP+GAGK+T + L+ SGSI ++G DI
Sbjct: 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI 66
Query: 90 TKM--PMYRRARLGISYLPQEASIFRGLTVEENIL-----------AVLEVYEKDKKKRH 136
TK+ R+ R I + Q ++ LTV EN+L ++L + ++ K+R
Sbjct: 67 TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERA 126
Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
S L+ + + A LSGGQ++R+ IAR+L P IL DEP A +DP
Sbjct: 127 L---SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 197 IHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
+ ++ + GI ++I H V DR + AG ++ G E +D++ +R +Y
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE-LDDEVLRHIY 242
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 122 bits (307), Expect = 1e-28
Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
LS ++ K++ + +K + L VK GE V LLGP+G GKTT ++ GL +G+I
Sbjct: 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G DIT++P +R GI + Q ++F LTV +NI L+ + + E++ LL
Sbjct: 65 GRDITRLPPQKRD-YGIVF--QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDL 121
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ LSGGQ++R+ +AR+L + P +LLDEP + +D + IR L
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181
Query: 206 SR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
R G+ ++ H+ E L++ DR +++ G + GT QEI +
Sbjct: 182 RRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 120 bits (304), Expect = 2e-28
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 12/225 (5%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
L+K++ V + L V + GLLGPNGAGK+T M+TG++ SG I DG+
Sbjct: 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH--- 62
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
P R+ I L + ++ LT EN+ + ++D +L ++T
Sbjct: 63 --PWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVDLTN 116
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
A S G ++RL IA +L++ P ++LDEP G+DP+ I ++ LIR +GI
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
++++ H + E+ L D II GVL G +I ++++ +L+
Sbjct: 177 VILSSHILSEVQQLADHIGIIS-EGVL--GYQGKINKSENLEKLF 218
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 120 bits (303), Expect = 4e-28
Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 11/236 (4%)
Query: 25 LLSACSLTKKYNSVYVV-KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
+L L Y KG++ + GE+V LLGPNGAGK+T F G++ SG +
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 84 IDGNDIT---KMPMYRRARLGISYLPQEASIFRGLTVEENIL---AVLEVYEKDKKKRHE 137
I G I K + R +GI + + +F TVEE++ L + +++ +KR
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKR-- 117
Query: 138 KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
+ LK + + + LSGGQ++R+ IA L P I+LDEP +G+DP+ S I
Sbjct: 118 -VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQI 176
Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
L+ DL GI I+I+ H+V + D+ Y++ G ++ GT +E+ + + R
Sbjct: 177 MKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIR 232
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 116 bits (291), Expect = 7e-27
Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 20/221 (9%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR--RARLG 101
+ L V G+I ++GP+G GKTT ++ G I D G I DG +I M R R
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 102 ISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL-DSLLKEFNITKWRHV------ 154
+S L Q ++F + V +N+ L + H +L LL + K V
Sbjct: 86 MSMLFQSGALFTDMNVFDNVAYPL--------REHTQLPAPLLHSTVMMKLEAVGLRGAA 137
Query: 155 -LAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211
L P LSGG RR +AR++ P I+ DEPF G DP+ + + LI +L S G+
Sbjct: 138 KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTC 197
Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252
++ H+V E+L++ D AYI+ ++AHG+ Q + N D R
Sbjct: 198 VVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPR 238
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 115 bits (290), Expect = 1e-26
Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 4/193 (2%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
DL V GEIV ++GP+GAGK+T ++ G I SGSIK++ T + Y+R +S
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRP---VSM 74
Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164
L QE ++F LTV +NI L K ++ EK+ ++ I + L LSGGQR
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQR 134
Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RGIGILITDHNVHEILT 223
+R+ +AR LV +LLDEPF+ +DP+ ++ L++ L S R +L+ H++ +
Sbjct: 135 QRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194
Query: 224 LIDRAYIIHAGGV 236
+ + ++ G +
Sbjct: 195 IASQIAVVSQGKI 207
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 113 bits (285), Expect = 4e-26
Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 5/234 (2%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L ++ +V GVD+ PG + GLLGPNG+GK+T ++ G + D+G++ +
Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKDKKKRHEKLDS 141
G D+ + RAR ++ + Q++ LTV + + ++ D +D
Sbjct: 62 GVDLHGLSRRARARR-VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120
Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
L ++ LSGG+R+R+ +AR+L P +LLDEP +D A + L+
Sbjct: 121 ALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV 180
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
R+LA+ G+ ++ H+++ + D ++ G V+A G +E++ +R +Y
Sbjct: 181 RELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVY 234
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 113 bits (285), Expect = 4e-26
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 8/240 (3%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+S + K + V+ +K V+L V PGEI LLG NGAGK+T +++G+ G+I I
Sbjct: 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL-------AVLEVYEKDKKKRHE 137
+ + K+ A+LGI + QE S+ LTV EN+ V V D ++
Sbjct: 65 NNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV 124
Query: 138 KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
+ +L + LS ++ LEIA++L+ I++DEP + + + +
Sbjct: 125 RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184
Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
+++ L G I+ H + EI + DR ++ G + G V + + N D+ RL +G
Sbjct: 185 FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD-VSNDDIVRLMVG 243
Score = 82.9 bits (205), Expect = 8e-17
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 37/232 (15%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
V+ + V GEI+G G G+G+T + G+ G I+++G DI+ +
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 101 GISYLPQ---EASIFRGLTVEENILAVLE-------------VYEKDKKKRHEKLDSLLK 144
G++Y+ + + F ++ +N+ A+ +E D+++ E LL
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNM-AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 145 ------EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
NIT+ LSGG ++++ I++ L P I+ DEP G+D A ++I+
Sbjct: 398 LKCHSVNQNITE--------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY 449
Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
++R LA G IL+ + EI+T+ DR I V G + +I+ N+D
Sbjct: 450 KVMRQLADDGKVILMVSSELPEIITVCDR--IA----VFCEGRLTQILTNRD 495
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 113 bits (284), Expect = 5e-26
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 13/210 (6%)
Query: 46 LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYL 105
L GE++GLLGPNGAGKTT + GLI G++K+ G + I Y+
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS------PGKGWRHIGYV 54
Query: 106 PQ--EASIFRGLTVEENILA----VLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159
PQ E + ++V +++ + + + L+ +T+ L
Sbjct: 55 PQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGEL 114
Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
SGGQR+R+ +AR+L + PS +LLDEPF G+D + L +LA G IL+T H++
Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174
Query: 220 EILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
+ + DR +++ G V+A GT Q++ D
Sbjct: 175 QAMATCDRVVLLN-GRVIADGTPQQLQDPA 203
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 111 bits (281), Expect = 1e-25
Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
DL V+ GE V +LGP+GAGK+T ++ G + SGS+ ++G D T P RR +S
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP---VSM 75
Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164
L QE ++F LTV +NI L K + EKL ++ ++ I L LSGGQR
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQR 135
Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILT 223
+R+ +AR LV +LLDEPF+ +DP ++ L+ + R + +L+ H++ +
Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAAR 195
Query: 224 LIDRAYIIHAGGVLAHGTVQEIID 247
+ R+ ++ G + G E++
Sbjct: 196 IAPRSLVVADGRIAWDGPTDELLS 219
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 110 bits (277), Expect = 4e-25
Identities = 72/245 (29%), Positives = 127/245 (51%), Gaps = 22/245 (8%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+L A +L+ + ++ V L ++PGE+V +LGPNGAGK+T ++G + DSG +++
Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 85 DGNDITKMPMYRRA-RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
+G + A R + LPQ +S+ TVEE + + + + + + L
Sbjct: 62 NGRPLADWSPAELARRRAV--LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLV------SFPSYILLDEPFAGVDPVAISDI 197
+ ++ P LSGG+++R+++AR L P ++LLDEP + +D
Sbjct: 120 AQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA--HQH 177
Query: 198 HVL--IRDLA-SRGIGILITDHNVHEILTLI----DRAYIIHAGGVLAHGTVQEIIDNQD 250
HVL R LA RG+ +++ H+ L L DR ++H G ++A GT E++ +
Sbjct: 178 HVLRLARQLAHERGLAVIVVLHD----LNLAARYADRIVLLHQGRLVADGTPAEVLTPET 233
Query: 251 VRRLY 255
+RR+Y
Sbjct: 234 LRRVY 238
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 109 bits (275), Expect = 6e-25
Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 10/232 (4%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
LL +LTK ++ + V V L + GEI LLG +G GK+T M+ G +G I +
Sbjct: 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE---KLDS 141
DG D++ +P Y+R I+ + Q ++F +TVE+NI L ++DK + E +++
Sbjct: 79 DGVDLSHVPPYQRP---INMMFQSYALFPHMTVEQNIAFGL---KQDKLPKAEIASRVNE 132
Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
+L ++ ++ LSGGQR+R+ +ARSL P +LLDEP +D + + +
Sbjct: 133 MLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 202 RDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252
D+ R G+ ++ H+ E +T+ R I++ G + G +EI ++ R
Sbjct: 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTR 244
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 108 bits (271), Expect = 2e-24
Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 9/211 (4%)
Query: 31 LTKKYN-SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
++K Y V + V L+++ GE + L GP+GAGKTT ++ G + G ++I G D+
Sbjct: 7 VSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV 66
Query: 90 TKM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
++ P+ RR R+G+ + Q+ + TV EN+ LEV K +++ ++ + L+
Sbjct: 67 NRLRGRQLPLLRR-RIGVVF--QDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR 123
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+ + LSGG+++R+ IAR++V+ P +L DEP +DP I L++ L
Sbjct: 124 QVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGG 235
RG +++ H++ + + R I+ G
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 108 bits (271), Expect = 2e-24
Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 22/220 (10%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
++G+ ++ GE + ++GP+G+GK+T ++ G+ SGS+++DG D+ + + R
Sbjct: 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ---WDRE 388
Query: 99 RLG--ISYLPQEASIFRGLTVEENILAVLEVYEKDK-------KKRHEKLDSLLKEFNIT 149
G I YLPQ+ +F G TV ENI E + +K HE + L ++
Sbjct: 389 TFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDT- 446
Query: 150 KWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
V+ P LSGGQR+R+ +AR+L P ++LDEP + +D + I+ L +
Sbjct: 447 ----VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA 502
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
RGI +++ H +L +D+ ++ G + G E++
Sbjct: 503 RGITVVVITHRP-SLLGCVDKILVLQDGRIARFGERDEVL 541
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 107 bits (270), Expect = 2e-24
Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 4/191 (2%)
Query: 56 LLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGL 115
LLGP+G GKTT ++ G DSGSI +DG D+T +P + R I+ + Q ++F +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR---HINMVFQSYALFPHM 57
Query: 116 TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVS 175
TVEEN+ L++ + + + ++ L+ + ++ LSGGQ++R+ +AR+LV
Sbjct: 58 TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117
Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAG 234
P +LLDEP + +D + + ++ + + GI + H+ E +T+ DR I+ G
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177
Query: 235 GVLAHGTVQEI 245
+ GT +EI
Sbjct: 178 KIAQIGTPEEI 188
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 107 bits (268), Expect = 4e-24
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRR-- 97
V+ ++L + PGEIV L GP+G+GKTT ++ GL GS+K+ G ++
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKEFNITKWRHVLA 156
R I Y+ Q ++ LT +N+ LE+ ++ E+ ++L+ +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITD 215
LSGGQ++R+ IAR+LV P +L DEP A +D + D+ L++ LA +G ILI
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199
Query: 216 HNVHEILTLIDRAYIIH 232
H+ + IL + DR I+H
Sbjct: 200 HD-NRILDVADR--IVH 213
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 106 bits (267), Expect = 4e-24
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 3/215 (1%)
Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM--PM 94
++ + V L+V G+I G++G +GAGK+T + L SGS+ +DG D+T +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154
+AR I + Q ++ TV N+ LE+ K + K+ LL +
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS 136
Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILI 213
LSGGQ++R+ IAR+L S P +L DE + +DP I L++++ R G+ IL+
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196
Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
H + + + D +I G ++ GTV EI +
Sbjct: 197 ITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 105 bits (263), Expect = 1e-23
Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%)
Query: 25 LLSACSLTKKYN-SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
L+ L Y+ S + ++ + ++GPNGAGK+T F G++ SGS+
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 84 IDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
I G ITK + R +G+ + + IF TVE++I D++ ++ S
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
L + + R + LSGG+++R+ IA + P ++LDEP AG+DP + ++ +
Sbjct: 122 LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 203 DLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
DL G+ ++ + H + + + D Y++ G ++A+GTV+EI D+
Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLA 233
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 104 bits (262), Expect = 2e-23
Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 24/245 (9%)
Query: 12 MPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71
+ + +S L+ ++K ++ V+ +DL + GE + LLGP+G GKTT ++
Sbjct: 1 SKKLNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI 60
Query: 72 TGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVY 128
G DSG I +DG DIT +P R ++ + Q ++F +TV EN+ L + +
Sbjct: 61 AGFETPDSGRIMLDGQDITHVPAENRH---VNTVFQSYALFPHMTVFENVAFGLRMQKTP 117
Query: 129 EKDKKKRHEKLDSL----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDE 184
+ R +++L L+EF K LSGGQ++R+ IAR++V+ P +LLDE
Sbjct: 118 AAEITPR--VMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLLDE 170
Query: 185 PFAGVD----PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
+ +D +++ L R L GI + H+ E LT+ DR ++ G + G
Sbjct: 171 SLSALDYKLRKQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
Query: 241 TVQEI 245
T +EI
Sbjct: 228 TPREI 232
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 104 bits (261), Expect = 3e-23
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 29/237 (12%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
S + V L ++PGE V ++G G+GK+T ++ GL GS+ +D
Sbjct: 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL---------AVLEVYEK----DK 132
G DI ++ R I Y+PQ+ +F G T+ +NI +L E +
Sbjct: 526 GVDIRQIDPADL-RRNIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEF 583
Query: 133 KKRHEK-LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
+RH LD + E + LSGGQR+ + +AR+L+ P +LLDEP + +D
Sbjct: 584 VRRHPDGLDMQIGERGRS---------LSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634
Query: 192 VAISD-IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+ L R LA + + +L+T H +L L+DR ++ G ++A G ++++
Sbjct: 635 RSEERFKDRLKRWLAGKTL-VLVT-HRTS-LLDLVDRIIVMDNGRIVADGPKDQVLE 688
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 104 bits (260), Expect = 3e-23
Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 15/243 (6%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+L KK++ V+ G+DL VKPGE+V ++GP+G+GKTT + L ++G+I++ DI
Sbjct: 8 NLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV--GDI 65
Query: 90 T---------KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLD 140
T + + R+ R + ++ Q ++F TV ENI+ + + + K+
Sbjct: 66 TIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA 125
Query: 141 -SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
LL + + LSGGQ++R+ IAR+L P IL DEP + +DP + ++
Sbjct: 126 RELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN 185
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLG 257
IR LA ++I H + + DRA + G ++ G + + + Q R +L
Sbjct: 186 TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFL- 244
Query: 258 DRF 260
++F
Sbjct: 245 EKF 247
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 103 bits (259), Expect = 4e-23
Identities = 65/236 (27%), Positives = 122/236 (51%), Gaps = 6/236 (2%)
Query: 23 DSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81
D +L L Y + + +KG+++ +K GE+ +LG NGAGK+T F + G++ SG
Sbjct: 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR 62
Query: 82 IKIDGNDI---TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138
I DG I K M R +G+ + + +F ++ + + + + + ++
Sbjct: 63 ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKR 121
Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
+D+ LK I + LS GQ++R+ IA LV P ++LDEP AG+DP+ +S+I
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 199 VLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
L+ ++ G+ I+I H++ + D +++ G V+ G +E+ +++ R
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLR 237
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 102 bits (256), Expect = 1e-22
Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 8/192 (4%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L+A +L + +G+ + GE + + GPNG GKTT ++ GL+ DSG ++ +
Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60
Query: 86 GNDITKM-PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
G + + R I YL + L+ EN L + ++ L
Sbjct: 61 GTALAEQRDEPHR---NILYLGHLPGLKPELSALEN----LHFWAAIHGGAQRTIEDALA 113
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+T + + A LS GQ+RRL +AR +S +LDEP +D ++ + L+R
Sbjct: 114 AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
Query: 205 ASRGIGILITDH 216
+RG +L+T H
Sbjct: 174 LARGGIVLLTTH 185
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 101 bits (254), Expect = 2e-22
Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 4/186 (2%)
Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT---KM 92
V+KG++ + GE++ LLG NGAGK+T + GL+ SG++ IDG + K
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
+ RR R+G+ + + +F V++++ + + ++ L + R
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
LSGG+++R+ IA ++ P +LLDEP AG+DP + ++R L + G+ ++
Sbjct: 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVV 181
Query: 213 ITDHNV 218
I+ H+V
Sbjct: 182 ISTHDV 187
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 101 bits (253), Expect = 2e-22
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 18/212 (8%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRR 97
D + + + G +G+GKTT ++ GL D G I ++G D K +P +R
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
I Y+ QEA +F L+V N+ + +R + +++ I H+L
Sbjct: 76 R---IGYVFQEARLFPHLSVRGNL--RYGMKRARPSERRISFERVIELLGIG---HLLGR 127
Query: 158 L---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILI 213
L LSGG+++R+ I R+L+S P +L+DEP A +D +I + L A GI IL
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
H++ E+L L DR ++ G V A G + E+
Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 101 bits (253), Expect = 2e-22
Identities = 79/254 (31%), Positives = 127/254 (50%), Gaps = 22/254 (8%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADS 79
LLSA + Y VK V+L V+ G + L+GP+G GKTTF + + +
Sbjct: 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63
Query: 80 GSIKIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKR 135
G I +DG DI P+ R R+G+ + Q+ + F ++V +N++A L++ +D+
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVF--QKPNPFPTMSVFDNVVAGLKLAGIRDRDHL 121
Query: 136 HEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
E + L+ W V L LSGGQ++RL IAR+L P +L+DEP + +
Sbjct: 122 MEVAERSLR--GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSAL 179
Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN- 248
DP + + I L+ DL + I+I HN+H+ + D G ++ HG ++ N
Sbjct: 180 DPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
Query: 249 QDVR-RLYLGDRFA 261
+D R Y+ RF
Sbjct: 239 RDERTEAYVSGRFG 252
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 101 bits (253), Expect = 2e-22
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+ GV L + PGE V +LGP+G+GK+T ++TGL+ G + +DG ++ + R R
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRR 409
Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKK--RHEKLDSLLKEF--NITKWRHV 154
IS Q+A +F TV +N+ L + +++ L L+ +
Sbjct: 410 --ISVFAQDAHLF-DTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGE 466
Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILIT 214
LSGG+R+RL +AR+L++ +LLDEP +D S++ + S ++IT
Sbjct: 467 GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526
Query: 215 DH 216
H
Sbjct: 527 HH 528
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 99.7 bits (249), Expect = 7e-22
Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 12/203 (5%)
Query: 25 LLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
LL +L K+Y V+KGV L + GEIV ++G +G+GK+T +++ GL SG
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 81 SIKIDGNDITKMPMYRRARL-----GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135
+ +G ++K+ RA+L G Y Q + T EN+ L + +K K+
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIY--QFHHLLPDFTALENVAMPLLIGKKSVKEA 118
Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
E+ +L++ + + LSGG+R+R+ IAR+LV+ PS +L DEP +D
Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178
Query: 196 DIHVLIRDLAS-RGIGILITDHN 217
I L+ +L L+ H+
Sbjct: 179 IIFDLMLELNRELNTSFLVVTHD 201
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 98.9 bits (246), Expect = 1e-21
Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 23/244 (9%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS---IKIDGN 87
L K +N + VDL + GE+V LLGP+G+GK+T ++GLI D + I++ G
Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69
Query: 88 DITKMPMY----RRARLGISYLPQEASIFRGLTVEENIL-----------AVLEVYEKDK 132
+ + R++R Y+ Q+ ++ L+V EN+L + +++
Sbjct: 70 TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ 129
Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
K+R + L + + H LSGGQ++R+ IAR+L+ IL DEP A +DP
Sbjct: 130 KQRALQ---ALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186
Query: 193 AISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
+ + +RD+ + GI +++T H V L +R + G V G+ Q+ DN+
Sbjct: 187 SARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ-FDNERF 245
Query: 252 RRLY 255
LY
Sbjct: 246 DHLY 249
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 98.5 bits (245), Expect = 2e-21
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 10/227 (4%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+L+ L +Y V+KG++L + GL+G NG GK+T F ++GL+ G++
Sbjct: 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60
Query: 85 DGN--DITKMPMYR-RARLGISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEK 138
G D +K + R ++ + E IF ++ +I L L V E + +R
Sbjct: 61 QGKPLDYSKRGLLALRQQVATVFQDPEQQIFY-TDIDSDIAFSLRNLGVPEAEITRR--- 116
Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
+D L + +RH LS GQ++R+ IA +LV Y+LLDEP AG+DP + +
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+IR + ++G ++I+ H++ I + D Y++ G +L HG E+
Sbjct: 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 98.5 bits (246), Expect = 2e-21
Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 8/226 (3%)
Query: 31 LTKKYN--SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
++ Y +K V + GE V +LG NG+GK+T ++TGL+ SG IKIDG
Sbjct: 13 VSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT 72
Query: 89 ITKMPM-YRRARLGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
I+K + R ++GI + Q + F G TVE++I LE + KK + +D L K+
Sbjct: 73 ISKENLKEIRKKIGIIF--QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV 130
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
+ + LSGGQ++R+ IA L P I+ DE + +DP +I ++ DL
Sbjct: 131 GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK 190
Query: 207 RGIGILIT-DHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
LI+ H++ E + L D+ + G ++A G +EI++N+++
Sbjct: 191 TRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEI 235
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 98.2 bits (244), Expect = 2e-21
Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 52 EIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASI 111
+I LG NGAGKTT ++TGL+ SG++ + G DI R LG+ PQ +
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC--PQHNIL 1014
Query: 112 FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIAR 171
F LTV E+IL ++ + ++ +++++L++ + R+ A LSGG +R+L +A
Sbjct: 1015 FHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAI 1074
Query: 172 SLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYII 231
+ V ++LDEP +GVDP + I L+ S G I+++ H++ E L DR II
Sbjct: 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAII 1133
Query: 232 HAGGVLAHGT 241
G + GT
Sbjct: 1134 SQGRLYCSGT 1143
Score = 96.2 bits (239), Expect = 7e-21
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 12/232 (5%)
Query: 20 ASKDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77
+K +L LTK Y S V + + V+PGE GLLG NGAGKTT F M+TG
Sbjct: 1932 GNKTDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV 1991
Query: 78 DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137
SG + G I + + Y PQ +I LT E+ L +Y + + E
Sbjct: 1992 TSGDATVAGKSI--LTNISDVHQNMGYCPQFDAIDDLLTGREH----LYLYARLRGVPAE 2045
Query: 138 KLDSL----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
+++ + ++ ++ + LA SGG +R+L A +L+ P +LLDEP G+DP A
Sbjct: 2046 EIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105
Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ I + G +++T H++ E L R I+ G GT+Q +
Sbjct: 2106 RRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 98.1 bits (245), Expect = 2e-21
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 31/208 (14%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
++ V V PGE V L+GP+GAGK+T ++ G + GSI ++G + R
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW-R 395
Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEK--LDSLLKEFNITKWRHVLA 156
I+++PQ +F G T+ ENI LA + + + ++ E+ LD +
Sbjct: 396 DQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIRRALERAGLDEFVAA----------L 444
Query: 157 PL------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
P LSGGQ +RL +AR+ + +LLDEP A +D + + +R L
Sbjct: 445 PQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRAL 504
Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIH 232
A +L+T H + I+
Sbjct: 505 AQGRTVLLVT----HRLALAERADRIVV 528
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 96.8 bits (241), Expect = 5e-21
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 26/243 (10%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89
Y S ++ ++L + E+ +GP+G GK+TF F M + C G + IDG D+
Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74
Query: 90 TKMPM---YRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
+ RA++G+ + P SI+ + L K+KKK E ++ L
Sbjct: 75 YSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK----LHGLAKNKKKLDEIVEKSL 130
Query: 144 KEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
+ W + L LSGGQ++RL IAR++ P+ +L+DEP + +DPVA + I
Sbjct: 131 TSVGL--WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188
Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLY 255
LI++L I++T H++ + + DR +G ++ + T QEI N + Y
Sbjct: 189 ENLIQELKKNFTIIVVT-HSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKRY 247
Query: 256 LGD 258
+ D
Sbjct: 248 IVD 250
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 96.6 bits (241), Expect = 6e-21
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 8/231 (3%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
LL + K + V + G L V PG ++ L+G NGAGK+T ++TG+ D+GSI
Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63
Query: 85 DGNDIT-KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK----DKKKRHEKL 139
G ++T P + GI + QE ++ LT+ ENI E + D KK + +
Sbjct: 64 LGKEVTFNGPKSSQEA-GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA 122
Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPS-YILLDEPFAGVDPVAISDIH 198
D LL N+ L LS G+++ +EIA+ L SF S I++DEP + +
Sbjct: 123 DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL-SFESKVIIMDEPTDALTDTETESLF 181
Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
+IR+L S+G GI+ H + EI + D + G +A V ++ ++
Sbjct: 182 RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDS 232
Score = 78.9 bits (195), Expect = 1e-15
Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
V V ++ GEI+G+ G GAG+T ++ G + SG + +DG+++
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 101 GISYLPQEAS---IFRGLTVEENI-LAVLEVYEK-----DKKKRHEKLDSLLKEFNI-TK 150
GI Y+ ++ + G++V+EN+ L L + + + + ++ FNI T
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
LLSGG ++++ IAR L++ P ++LDEP GVD A +I+ LI + G+
Sbjct: 388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLS 447
Query: 211 ILITDHNVHEILTLIDRAYIIHAG 234
I++ + E+L + DR ++H G
Sbjct: 448 IILVSSEMPEVLGMSDRILVMHEG 471
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 95.8 bits (239), Expect = 9e-21
Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 28/237 (11%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG----LICADSGS 81
L L ++KGV+L VK GEI ++GPNG+GK+T + G + SG+
Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT--SGT 58
Query: 82 IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS 141
I G D+ ++ RAR G+ Q G++ E + + L + + L
Sbjct: 59 ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD 118
Query: 142 LLKEFNITKWRHVLAPL--------------LSGGQRRRLEIARSLVSFPSYILLDEPFA 187
LK + LA L SGG+++R EI + + P +LDE +
Sbjct: 119 FLKLL-----KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173
Query: 188 GVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHGTV 242
G+D A+ + I L LI H +L I D +++ G ++ G V
Sbjct: 174 GLDIDALKIVAEGINRLREPDRSFLIITHY-QRLLNYIKPDYVHVLLDGRIVKSGDV 229
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 95.8 bits (239), Expect = 1e-20
Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 17/231 (7%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKID 85
L Y +K ++L + ++ L+GP+G GK+T M L+ G + D
Sbjct: 7 LNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFD 66
Query: 86 GNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDS 141
G DI + R R+G+ + Q+ + F +++ +NI ++ KDKK+ E ++
Sbjct: 67 GQDIYDKKIDVVELRRRVGMVF--QKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEE 123
Query: 142 LLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
LK+ ++ K R H A LSGGQ++RL IAR+L P +LLDEP + +DP+A I
Sbjct: 124 SLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI 183
Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
LI++L + I+I HN+ + + DR + G ++ +G ++I N
Sbjct: 184 EELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 94.3 bits (235), Expect = 3e-20
Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 42 KGVDLYVKPGEIVGLLGPNGAGKTTF-----FYMMTGLICADSGSIKIDGNDITKMPMYR 96
K V KPGE++ ++G +GAGKTT F G+ SGS+ ++G I M
Sbjct: 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKG--SGSVLLNGMPIDAKEMRA 99
Query: 97 RARLGISYLPQEASIFRGLTVEE--NILAVLEVYEK-DKKKRHEKLDSLLKEFNITKWRH 153
+ +Y+ Q+ LTV E A L + + KK++ E++D +L+ + K +
Sbjct: 100 IS----AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN 155
Query: 154 VL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLAS 206
LSGG+R+RL A L++ P + DEP +G+D +A S + VL + LA
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL-KGLAQ 214
Query: 207 RGIGILITDHN-VHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+G I+ T H E+ L D+ ++ G V G+ + +
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 93.4 bits (233), Expect = 5e-20
Identities = 53/192 (27%), Positives = 103/192 (53%), Gaps = 7/192 (3%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
++KK+ ++ ++L ++ G++ ++G +G+GK+T ++ L DSG + ++G +
Sbjct: 4 ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63
Query: 91 KMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
+ +RR +LG YL Q ++ TVEEN+ L+ + KK++ EK L++
Sbjct: 64 PLNSKKASKFRREKLG--YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEK 121
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ LSGG+++R+ +AR+++ P IL DEP +DP ++ L+ +L
Sbjct: 122 VGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 206 SRGIGILITDHN 217
G I+I H+
Sbjct: 182 DEGKTIIIVTHD 193
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 93.3 bits (232), Expect = 6e-20
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 3/212 (1%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RAR 99
+KG+ L + G LLGPNGAGK+T + G+ G +K+ G ++ R++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159
+G+ + + +F TV +++ DK + +++ LK + +R L
Sbjct: 81 VGLVFQDPDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139
Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
S GQ++R+ IA L P I+LDEP A +DP + ++ L ++G +++ H+V
Sbjct: 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199
Query: 220 EILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
D+ ++ G VLA G ++ ++D+
Sbjct: 200 LAAEWADQVIVLKEGRVLAEGDK-SLLTDEDI 230
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 92.0 bits (228), Expect = 1e-19
Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 19/241 (7%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICAD--SGSIKIDGNDI 89
Y + +KG+ + ++ +V +GP+G GK+TF F M LI A G I+IDG +I
Sbjct: 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72
Query: 90 -TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFN 147
K R + + Q + F ++ EN+ L V KD ++++ LK
Sbjct: 73 YDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKG-- 129
Query: 148 ITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
W V L LSGGQ++RL IAR++ PS +L+DEP + +DP++ + + LI
Sbjct: 130 AALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLGDR 259
+L + I+I HN+ + + D+ + G ++ + ++I N ++ + Y+ R
Sbjct: 190 HEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNYITGR 248
Query: 260 F 260
F
Sbjct: 249 F 249
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 91.8 bits (228), Expect = 2e-19
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 11/219 (5%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-CAD-SGSI 82
LL + K + V + G+DL V+PGE VGL G NGAGK+T +++G+ G I
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK-------KR 135
G+ + + R GI + QE ++ L+V ENI E+ + R
Sbjct: 61 YWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR 120
Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
+ L L+ R V GGQ++ +EIA++L ++LDEP + +
Sbjct: 121 AKNLLRELQLDADNVTRPVGD--YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178
Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234
+ +IRDL + G+ + H ++E+ + D +I G
Sbjct: 179 ILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217
Score = 79.5 bits (196), Expect = 8e-16
Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA----DSGSIKIDGNDITKMPMYR 96
V V ++ GEI+G+ G GAG+T ++ L A G++ I+G + +
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTE---LVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332
Query: 97 RARLGISYLPQEAS---IFRGLTVEENI-LAVLEVYEK----DKKKRHEKLDSLLKEFNI 148
R GI+ +P++ I L V +NI L+VL+ + D + + S ++ +
Sbjct: 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV 392
Query: 149 TKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
K P+ LSGG +++ +A+ L++ P ++LDEP GVD A +I+ LI LA
Sbjct: 393 -KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLA----HGTVQEII 246
G+ I++ + E+L L DR +I G + H QE +
Sbjct: 452 EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQEQV 495
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 91.7 bits (228), Expect = 2e-19
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 19/219 (8%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT----KMPMYRRAR 99
V++ ++ GE VGL+G G+GK+T + GL+ SG I IDG DIT K+ R+ +
Sbjct: 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK-K 84
Query: 100 LGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153
+G+ + E +F T+E++I L + E +++ KR + L E K
Sbjct: 85 VGLVFQYPEYQLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK--- 140
Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211
+P LSGGQ+RR+ IA + P ++LDEP AG+DP +I I++L + I
Sbjct: 141 --SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI 198
Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
++ H++ ++ L DR +++ G GT +E+ +
Sbjct: 199 ILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 91.9 bits (228), Expect = 2e-19
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 13/217 (5%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLG-ISYLP 106
V G I L+G NG+GK+T F + G + SG I I G P + + ++Y+P
Sbjct: 30 VPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG-----QPTRQALQKNLVAYVP 84
Query: 107 QEASIFRGLTVEENILAVLEVY------EKDKKKRHEKLDSLLKEFNITKWRHVLAPLLS 160
Q + V + ++ Y + KK+ + + + L ++ ++RH LS
Sbjct: 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELS 144
Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220
GGQ++R+ +AR++ ILLDEPF GVD + I L+R+L G +L++ HN+
Sbjct: 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204
Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
+ D ++ G VLA G + +++ + G
Sbjct: 205 VTEFCDYTVMVK-GTVLASGPTETTFTAENLELAFSG 240
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 91.6 bits (227), Expect = 2e-19
Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 4/212 (1%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP---MYRR 97
VK L ++ GEI ++G +G+GK+T ++ LI G + IDG DI K+ +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
R I+ + Q ++ +TV +N +E+ + ++R EK L++ + + H
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163
Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGILITDH 216
LSGG R+R+ +AR+L P +L+DE F+ +DP+ +++ L++ A I+ H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 217 NVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
++ E + + DR I+ G V+ GT EI++N
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 91.7 bits (228), Expect = 2e-19
Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 2/227 (0%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+++K + V+ +DL + GE+V ++GP+G+GK+T + L SG + +DG +
Sbjct: 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV 65
Query: 90 TKMPMYRRA-RLGISYLPQEASIFRGLTVEENIL-AVLEVYEKDKKKRHEKLDSLLKEFN 147
+ R R + Q+ +F LT EN++ L V K++ ++ LL +
Sbjct: 66 NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVG 125
Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207
+ + H LSGGQ++R+ IAR+L P +L DEP + +DP ++ +++DLA
Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185
Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL 254
G+ ++I H + + R I G + G Q +I N +RL
Sbjct: 186 GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRL 232
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 91.3 bits (227), Expect = 2e-19
Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 4/226 (1%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
++ + + ++TK++ S V+ ++L +K G +V LLGP+G GKTT ++ GL G
Sbjct: 2 TQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61
Query: 81 SIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLD 140
I IDG D+T + +R I + Q ++F +++ EN+ L++ K++R +++
Sbjct: 62 QIFIDGEDVTHRSIQQR---DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVK 118
Query: 141 SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
L+ ++ + +SGGQ++R+ +AR+L+ P +L DEP + +D +
Sbjct: 119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK 178
Query: 201 IRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
IR+L + I L H+ E + D +++ G ++ G+ QE+
Sbjct: 179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 91.5 bits (228), Expect = 2e-19
Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 8/192 (4%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L L + G+ + GE + L GPNG+GKTT ++ GL+ +G+IK+D
Sbjct: 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD 62
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G DI YL ++ LTV EN LE + + + L+
Sbjct: 63 GGDID----DPDVAEACHYLGHRNAMKPALTVAEN----LEFWAAFLGGEELDIAAALEA 114
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ H+ LS GQ+RR+ +AR LVS +LDEP A +D A++ LIR
Sbjct: 115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
Query: 206 SRGIGILITDHN 217
++G ++ H
Sbjct: 175 AQGGIVIAATHI 186
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 90.9 bits (226), Expect = 3e-19
Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 31/223 (13%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRA 98
+ G++L V+PGE V L+GP+GAGK+T F ++ SG I +DG D+ ++ P RA
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 99 RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKR-HEKL-------DSLLK 144
R+ + +PQ+ +F +V ENI EV + HE + D+ L
Sbjct: 415 RMAL--VPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRD 203
E +T LSGGQR+R+ IAR+++ +LLDE + +D A S+ V +
Sbjct: 472 ERGVT---------LSGGQRQRIAIARAILKDAPILLLDEATSALD--AESEQLVQQALE 520
Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+G LI H + +L DR ++ G ++A GT E+I
Sbjct: 521 TLMKGRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAELI 562
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 91.0 bits (227), Expect = 3e-19
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 15/227 (6%)
Query: 30 SLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
+++K + +++ + V L++ GEI G++G +GAGK+T + L SG + +D
Sbjct: 6 NISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVD 65
Query: 86 GNDITKM--PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
G D+T + R+AR I + Q ++ TV +N+ LE+ K + ++ LL
Sbjct: 66 GQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELL 125
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
+ ++ LSGGQ++R+ IAR+L S P +L DE + +DP I L++D
Sbjct: 126 ELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 204 LASR-GIGI-LITDHNVHE---ILTLIDRAYIIHAGGVLAHGTVQEI 245
+ G+ I LIT HE + + DR +I AG ++ GTV E+
Sbjct: 186 INRELGLTIVLIT----HEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 91.0 bits (226), Expect = 3e-19
Identities = 53/197 (26%), Positives = 104/197 (52%), Gaps = 8/197 (4%)
Query: 31 LTKKYNSVY--VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
++K Y + + ++ ++ GE+V L+G +GAGK+TF ++ G+ G I+ +G D
Sbjct: 7 VSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQD 66
Query: 89 ITKMPMYR----RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
+T++ R +G+ + Q+ + TV +N+ L + + +E++ + L+
Sbjct: 67 LTRLRGREIPFLRRHIGMVF--QDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALE 124
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+ + H L LSGG+++R+ IAR++V P +L DEP +DP DI L +
Sbjct: 125 KVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEF 184
Query: 205 ASRGIGILITDHNVHEI 221
RG +L+ H+++ +
Sbjct: 185 NRRGTTVLVATHDINLV 201
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 90.5 bits (225), Expect = 3e-19
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
+ K + V+ + L + G++V LLGP+G+GKTT ++ GL SG I+ G D++
Sbjct: 8 IKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS 67
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVYEK-DKKKRHEKLDSLLKEF 146
++ R ++G + Q ++FR +TV +NI L VL E+ + K+ LL+
Sbjct: 68 RLHARDR-KVGFVF--QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV 124
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
+ LSGGQ++R+ +AR+L P +LLDEPF +D ++ +R L
Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184
Query: 207 --RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ + +T H+ E + + DR ++ G + GT ++
Sbjct: 185 ELKFTSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 89.8 bits (223), Expect = 6e-19
Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMY 95
+KGV+L ++ GE + L+G +G GK+T +++GL SG + ++G IT +M ++
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 96 RRARLGISYLPQEASIFRGLTVEENI-LAVLEV-YEKDKKKRHEKLDSLLKEFNITKWRH 153
Q S+ LTV ENI LAV V + K +R ++ + +T+
Sbjct: 61 -----------QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD 109
Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGIL 212
LSGG ++R+ IAR+L P +LLDEPF +D + ++ L++ + +L
Sbjct: 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ H+V E L L DR ++ G G + E+
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 88.9 bits (221), Expect = 1e-18
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 6/195 (3%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-- 87
+ Y + + + L GE + LLGP+GAGK++ ++ L SG++ I GN
Sbjct: 7 GINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66
Query: 88 DITKMP---MYRRARLGISYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLL 143
D +K P R R + + Q+ +++ LTV++N I A V K + + + LL
Sbjct: 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLL 126
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
+ + + LSGGQ++R+ IAR+L+ P +L DEP A +DP + I +IR+
Sbjct: 127 ERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186
Query: 204 LASRGIGILITDHNV 218
LA GI +I H V
Sbjct: 187 LAETGITQVIVTHEV 201
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 89.0 bits (221), Expect = 1e-18
Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 23/243 (9%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89
Y +K ++L ++ ++ L+GP+G GK+TF M LI G + +DG DI
Sbjct: 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72
Query: 90 TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145
K + R R+G+ + Q+ + F +++ +N+ + KDKKK E ++ LK
Sbjct: 73 YKSDIDVNQLRKRVGMVF--QQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG 129
Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
+ W V L LSGGQ++RL IAR+L P +L+DEP + +DP++ I
Sbjct: 130 AAL--WDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE 187
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257
LI++L + I+I HN+ + + D+ G ++ G ++ N +R Y+
Sbjct: 188 LIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKRTEDYIT 246
Query: 258 DRF 260
RF
Sbjct: 247 GRF 249
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 88.1 bits (218), Expect = 2e-18
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 18/245 (7%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L+ L K+Y V+KGV L G+++ ++G +G+GK+TF + L GSI ++
Sbjct: 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65
Query: 86 GNDIT--------------KMPMYRRARLGISYLPQEASIFRGLTVEENIL-AVLEVYEK 130
G I R RL + + Q +++ +TV EN++ A ++V
Sbjct: 66 GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF--QHFNLWSHMTVLENVMEAPIQVLGL 123
Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
K++ E+ L + I + P+ LSGGQ++R+ IAR+L P +L DEP + +
Sbjct: 124 SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183
Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
DP + ++ +++ LA G +++ H + + +H G + G +++ N
Sbjct: 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNP 243
Query: 250 DVRRL 254
RL
Sbjct: 244 QSPRL 248
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 88.0 bits (218), Expect = 2e-18
Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 25/235 (10%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
+ L+ ++ V+ GVDL V+ G +VGL+GPNGAGKTT + G + +G++ +
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS---- 141
G+D+ + +R ++ +PQ+ S+ V V+E+ + R +
Sbjct: 64 GDDVEALSARAASRR-VASVPQDTSLSFEFDVR----QVVEMGRTPHRSRFDTWTETDRA 118
Query: 142 ----LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
++ + ++ LSGG+R+R+ +AR+L +LLDEP A + DI
Sbjct: 119 AVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASL------DI 172
Query: 198 H------VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+ L+R L G + H++ D ++ G V A G +++
Sbjct: 173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 87.9 bits (218), Expect = 3e-18
Identities = 61/223 (27%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-R 97
++K + + + G I ++GP+GAGK+T ++ LI GSI IDG DI + + R
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK-WRHVLA 156
++G+ + Q+ +F G TV++NI E K +++ ++ L + K +
Sbjct: 77 RKIGMVF--QQPHLFEG-TVKDNI----EYGPMLKGEKNVDVEYYLSIVGLNKEYATRDV 129
Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITD 215
LSGG+ +R+ IAR+L + P +LLDEP + +DP + I LI L ++ + ++
Sbjct: 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT 189
Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYL 256
HN+ + + D ++ G ++ + + N +V +L++
Sbjct: 190 HNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFI 232
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 87.6 bits (218), Expect = 3e-18
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 18/192 (9%)
Query: 43 GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRARLG 101
G+ + GE+V + GPNGAGKT+ ++ GL D+G + G I + Y + L
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL- 77
Query: 102 ISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158
YL + I LT EN+ + + + L L + + + V
Sbjct: 78 --YLGHQPGIKTELTALENLRFYQRLHGPGDDE------ALWEALAQVGLAGFEDVPVRQ 129
Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHN 217
LS GQ+RR+ +AR ++ +LDEPF +D ++ + L+ A + G+ IL T
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT--- 186
Query: 218 VHEILTLIDRAY 229
H+ L +
Sbjct: 187 -HQDLPVASDKV 197
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 87.4 bits (217), Expect = 3e-18
Identities = 64/246 (26%), Positives = 129/246 (52%), Gaps = 7/246 (2%)
Query: 22 KDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79
K+ ++ ++ +Y + Y +K V V GE V ++G NG+GK+T ++ GL+ ++
Sbjct: 2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61
Query: 80 GSIKIDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138
G+I + G +++ ++ R ++G+ + + F G TV++++ LE +++ E+
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNPDNQ-FVGATVQDDVAFGLENIGVPREEMVER 120
Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
+D L++ + + + LSGGQ++R+ IA L P I+LDE + +DP ++
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180
Query: 199 VLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID-NQDVRRLYL 256
+R L +GI +L H++ E DR +++ G +L GT +EI ++ + L
Sbjct: 181 ETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGL 239
Query: 257 GDRFAF 262
F+
Sbjct: 240 DVPFSV 245
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 87.2 bits (216), Expect = 4e-18
Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 29/261 (11%)
Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI- 75
+ + +LS +L Y + + + + + + L+GP+G GK+T F M LI
Sbjct: 1 MTMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP 60
Query: 76 -CADSGSIKIDGNDITKM---PMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVY 128
C +G I +G +I + R ++G+ + P SI+ EN+ ++
Sbjct: 61 GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIY------ENVAYGPRIH 114
Query: 129 -EKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYIL 181
EK+KK ++ LK + W V L LSGGQ++RL IAR+L P IL
Sbjct: 115 GEKNKKTLDTIVEKSLKGAAL--WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL 172
Query: 182 LDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
+DEP + +DP+A + I LI DL I++T HN+ + + D ++ G ++
Sbjct: 173 MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT-HNMQQAARVSDYTGFMYLGKLIEFDK 231
Query: 242 VQEIIDN--QDVRRLYLGDRF 260
+I +N +++ Y+ RF
Sbjct: 232 TTQIFENPHEELTENYITGRF 252
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 86.4 bits (215), Expect = 6e-18
Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 26/224 (11%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+KG+ L +K GE V LLG G GK+T ++T G I ++G I Y A
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD---YSEAA 411
Query: 100 L--GISYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA 156
L IS + Q +F T+ +N +LA E L +L++ + K
Sbjct: 412 LRQAISVVSQRVHLFSA-TLRDNLLLA-------APNASDEALIEVLQQVGLEKLLEDDK 463
Query: 157 PL----------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
L LSGG++RRL IAR+L+ +LLDEP G+D I L+ + A
Sbjct: 464 GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ 523
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
++IT H + L DR ++ G ++ GT QE++ Q
Sbjct: 524 NKTVLMIT-HRLTG-LEQFDRICVMDNGQIIEQGTHQELLAQQG 565
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 86.4 bits (214), Expect = 7e-18
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 7/192 (3%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
LL+A +L N V +D +V GE + + G NGAGKTT ++ GL+ +SG I+I
Sbjct: 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
DG T+ R+R ++YL + L+ EN+ + ++ + K+ S L
Sbjct: 71 DGKTATRG---DRSRF-MAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP---GSALA 123
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+ + L LS GQ++RL +AR +S LLDEP+A +D I+ ++ +I
Sbjct: 124 IVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183
Query: 205 ASRGIGILITDH 216
G L+T H
Sbjct: 184 LRGGGAALVTTH 195
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 86.4 bits (214), Expect = 7e-18
Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 8/216 (3%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI-DGN---DITKMP--M 94
V L ++ GEI L+G +G+GK++ + GL GS+ + DG+ D+
Sbjct: 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAAT 99
Query: 95 YRRARLG-ISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153
RR R +S + Q+ ++ LTVEEN+ LE+ + +R +++D L+ + +W
Sbjct: 100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD 159
Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGIL 212
LSGG ++R+ +AR+ +L+DEPF+ +DP+ + + L+ A I+
Sbjct: 160 KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTII 219
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
H++ E L + +R I+ G ++ HGT +EI+ N
Sbjct: 220 FVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 86.4 bits (214), Expect = 7e-18
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 12/209 (5%)
Query: 21 SKDSLLSACSLTKKYN----SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLIC 76
LL +L K+Y V+ V + GE++ ++G +G+GK+T +++ GL
Sbjct: 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60
Query: 77 ADSGSIKIDGNDITKMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131
SG + +G ++K+ R +LG Y Q + T EN+ L + +K
Sbjct: 61 PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIY--QFHHLLPDFTALENVAMPLLIGKKK 118
Query: 132 KKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
+ + + +L + + LSGG+R+R+ IAR+LV+ P +L DEP +D
Sbjct: 119 PAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
Query: 192 VAISDIHVLIRDLASR-GIGILITDHNVH 219
I L+ +L G L+ H++
Sbjct: 179 RNADSIFQLLGELNRLQGTAFLVVTHDLQ 207
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 86.4 bits (214), Expect = 7e-18
Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 14/238 (5%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+TK++ + V+ G++ V GE V L+GP+G+GK+T ++ L D G I+++G +
Sbjct: 5 DVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQL 64
Query: 90 TKMPM------------YRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRH 136
MP R+ R I + Q ++F TV +N+ A + V + +
Sbjct: 65 YHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE 124
Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
++ LL + + LSGGQ++R+ IAR+L P +L DE + +DP + +
Sbjct: 125 KRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 197 IHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
+ +IR LAS + +L+ H + DR G ++ G EI R
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEER 242
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 86.1 bits (213), Expect = 9e-18
Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 19/239 (7%)
Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CAD 78
+ + L + V V+ GV+L + I L+GP+G+GK+T + LI
Sbjct: 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 79 SGSIKIDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE--KDKKKR 135
SG + +DG DI KM + R R+ + + Q + L++ EN+ L++ K KK+
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVF--QIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119
Query: 136 HEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
E++ L++ + W V L LSGGQ++RL IAR+L P +L DEP A +
Sbjct: 120 QERVRWALEKAQL--WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
DP + I L +L + + I++ H + + D ++ G ++ G +E+ N
Sbjct: 178 DPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 86.0 bits (213), Expect = 1e-17
Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 24/265 (9%)
Query: 13 PEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY--- 69
P +S ++++ A L Y + V + + ++ ++GP+G GK+TF
Sbjct: 27 PSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN 86
Query: 70 MMTGLI--CADSGSIKIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAV 124
M LI G + G ++ P+ R R+G+ + Q+ + F ++ +N+
Sbjct: 87 RMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVF--QKPNPFPK-SIYDNVAYG 143
Query: 125 LEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPS 178
L++ D E+++ L+ + W V L LSGGQ++RL IAR++ P
Sbjct: 144 LKIQGYDGDI-DERVEESLRRAAL--WDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPE 200
Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
IL+DEP + +DPVA S I LI +LA +++T HN+ + + D+ + GG L
Sbjct: 201 VILMDEPASALDPVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTGGELV 259
Query: 239 H-GTVQEIIDNQDVRRL--YLGDRF 260
+I +N + +R+ Y+ +F
Sbjct: 260 EFDDTDKIFENPESQRVEDYITGKF 284
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 85.9 bits (212), Expect = 1e-17
Identities = 68/256 (26%), Positives = 131/256 (51%), Gaps = 23/256 (8%)
Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CA 77
++++SA + Y + + G+ L + E+ L+GP+G GK+TF + +
Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 78 DSGSIKIDGNDI--TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKK 133
+G IK +G +I +KM + R +G+ + Q+ + F +V +N+ L++ KDK+
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVF--QQPTPFP-FSVYDNVAYGLKIAGVKDKE 118
Query: 134 KRHEKLDSLLKEFNITKWRHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187
++++ LK+ I W+ A SGGQ++R+ IAR+L P +LLDEP +
Sbjct: 119 LIDQRVEESLKQAAI--WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176
Query: 188 GVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+DP++ S+I + +L + I++T HN+ + + D+ + G ++ G +E+
Sbjct: 177 ALDPISSSEIEETLMELKHQYTFIMVT-HNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235
Query: 248 N--QDVRRLYLGDRFA 261
+ + YL RF
Sbjct: 236 APKKQITSDYLNGRFG 251
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 85.1 bits (210), Expect = 1e-17
Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 19/220 (8%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN------DITKMP 93
++K + + + I G++GP+G+GK+T ++ LI IK+DG DI ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 94 MYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKW 151
+ R +G+ + Q+ + F L++ +NI L+ + K+K++ + ++ L++ + W
Sbjct: 85 AIKLRKEVGMVF--QQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL--W 140
Query: 152 RHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ V A LSGGQ++RL IAR+L P +L+DEP + +D V I LI +L
Sbjct: 141 KEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ I I+I HN ++ + D ++ G ++ G+ EI
Sbjct: 201 NE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 85.1 bits (211), Expect = 2e-17
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 5/217 (2%)
Query: 32 TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK 91
++ + V+L VK GE + +LG NG+GK+T M L+ G + +DG D +
Sbjct: 17 NEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD 76
Query: 92 MPMYR--RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
R + G+ + + I + VEE++ E ++ E++D LK+ +
Sbjct: 77 EENLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFGPENLGIPPEEIRERVDESLKKVGMY 135
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208
++R LLSGGQ++R+ IA L P I+ DEP A +DP ++ I++L + G
Sbjct: 136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG 195
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
I I++ H + E + DR ++ +G V+ GT +EI
Sbjct: 196 ITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 85.2 bits (211), Expect = 2e-17
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 38/251 (15%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89
Y + VDL + + +GP+G GK+TF M I C +G I +DG DI
Sbjct: 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88
Query: 90 TKM---PMYRRARLGISYL---PQEASIFRGLTVEENI--------LAVLEVYEKDKKKR 135
+ RAR+G+ + P SI+ EN+ LA + K +
Sbjct: 89 YDPRLDVVELRARVGMVFQKPNPFPKSIY------ENVAYGPRIHGLA------RSKAEL 136
Query: 136 HEKLDSLLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
E +++ L++ + K R H LSGGQ++RL IAR++ P IL+DEP + +DP
Sbjct: 137 DEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP 196
Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
+A + + LI +L I+I H++ + + R H G ++ G +++ N D
Sbjct: 197 IATAKVEELIDELRQN-YTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDD 255
Query: 252 RRL--YLGDRF 260
R Y+ RF
Sbjct: 256 PRTQDYITGRF 266
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 84.9 bits (210), Expect = 2e-17
Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 21/230 (9%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGNDI 89
Y S +V+KGVDL + + L+GP+G GK+T L+ + G +++ G +I
Sbjct: 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73
Query: 90 TKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE--KDKKKRHEKLDSLLK 144
P+ R +G+ + Q + F LT+ +N+ +++ K KK+ E+++ LK
Sbjct: 74 YSPDVDPIEVRREVGMVF--QYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALK 131
Query: 145 EFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
+ W V L LSGGQR+RL IAR+L P +L+DEP A +DPV + I
Sbjct: 132 K--AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189
Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
L+ +L +L+T H+ + + D ++ G ++ G +++ +N
Sbjct: 190 ELLFELKKEYTIVLVT-HSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 84.5 bits (209), Expect = 2e-17
Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 16/254 (6%)
Query: 9 GIEMPEFQENRASKDSLLSACSLTKKYNSV-----YVVKGVDLYVKPGEIVGLLGPNGAG 63
G+ E + + ++ +++K+Y SV V V L VK GEI G++G +GAG
Sbjct: 263 GVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAG 322
Query: 64 KTTFFYMMTGLICADSGSIKI----DGNDITKM-PMYR-RARLGISYLPQEASIFRGLTV 117
KTT ++ G++ SG + + + D+TK P R RA+ I L QE ++ TV
Sbjct: 323 KTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382
Query: 118 EENILAVLEVYEKDKKKRHEKLDSL-LKEFNITKWRHVLAPL---LSGGQRRRLEIARSL 173
+N+ + + D+ R + + +L + F+ K +L LS G+R R+ +A+ L
Sbjct: 383 LDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVL 442
Query: 174 VSFPSYILLDEPFAGVDPVAISDI-HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIH 232
+ P ++LDEP +DP+ D+ H +++ +I H++ +L + DRA ++
Sbjct: 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502
Query: 233 AGGVLAHGTVQEII 246
G ++ G +EI+
Sbjct: 503 DGKIVKIGDPEEIV 516
Score = 81.8 bits (202), Expect = 2e-16
Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 36/252 (14%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL---------------I 75
LTKK++ V+K + ++ GE++G+LG +GAGK+ +++ G+ +
Sbjct: 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVAL 65
Query: 76 CADSGSIKID----------GNDITKM---------PMYRRARLGISYLPQEA-SIFRGL 115
C G ++ G + + RR R I+ + Q +++
Sbjct: 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD 125
Query: 116 TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVS 175
TV +N+L LE + K+ + L++ ++ +A LSGG+++R+ +AR L
Sbjct: 126 TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAK 185
Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAG 234
P L DEP +DP +H + + + GI +++T H I L D+A + G
Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245
Query: 235 GVLAHGTVQEII 246
+ GT E++
Sbjct: 246 EIKEEGTPDEVV 257
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 84.1 bits (208), Expect = 3e-17
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 44/281 (15%)
Query: 14 EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY---M 70
E+ + D+ LS L Y + +KGV + + + L+GP+G GK+TF
Sbjct: 34 EWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93
Query: 71 MTGLICAD--SGSIKIDGNDI-------------------TKMPMYRRARLGISYLPQE- 108
M I A GS+++DG DI + P + R ISY P++
Sbjct: 94 MNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKH 153
Query: 109 ASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGG 162
I GL LA L + DK E ++ L++ + W V L LSGG
Sbjct: 154 GDINTGL------LARL-LGRDDKDAEDELVERSLRQAAL--WDEVNDRLDDNALGLSGG 204
Query: 163 QRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEIL 222
Q++RL IAR L P IL+DEP + +DP+A S I LI +LA +++T HN+ +
Sbjct: 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVT-HNMQQAA 263
Query: 223 TLIDRAYIIHAGGVLA-HGTVQEIIDNQDVRRL--YLGDRF 260
+ D+ + GG L + +I +N + +R+ Y+ +F
Sbjct: 264 RISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYITGKF 304
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 84.1 bits (208), Expect = 3e-17
Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 25/247 (10%)
Query: 24 SLLSACSLTKKYNS---------VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
SLL +T Y + V+ V L ++ GE VGLLG +G GK+T ++ GL
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 75 ICADSGSIKIDGNDITKM-PMYRRA-RLGISYLPQEA--SIFRGLTVEENILAVLEVYEK 130
G++ G D+ ++ RRA R + + Q++ ++ +TV + I L
Sbjct: 61 EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS 120
Query: 131 -DKKKRHEKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAG 188
D+ ++ ++ LL + ++ L LSGGQ +R+ IAR+L P I+LDE +
Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
Query: 189 VDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+D V + I L+R L G L H++ + + R ++ G +I++
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG---------QIVE 231
Query: 248 NQDVRRL 254
DV +L
Sbjct: 232 ECDVAQL 238
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 83.5 bits (206), Expect = 5e-17
Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 20/232 (8%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICADSGSIKIDGNDITKMPMYR-RAR 99
+++ ++ +I L+G +G GK+TF F M I G ++I+G D+ + R
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE--------KLDSLLKEFNITKW 151
+G+ + Q+ ++F ++ ENI +++ K K E + L +E
Sbjct: 81 VGMVF--QQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK 137
Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
++ LA LSGGQ++RL IAR+L P +LLDEP + +DP++ I L+++L S + +
Sbjct: 138 QNALA--LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSM 194
Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLGDRFA 261
++ HN+ + + D H G ++ G +E +N Q+ + YL F
Sbjct: 195 IMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYLSGAFG 246
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 83.5 bits (206), Expect = 5e-17
Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 22/243 (9%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLICAD--SGSIKIDGNDI 89
+ + VK V + + ++GP+G GK+T M L+ + +G I +D DI
Sbjct: 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73
Query: 90 TKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKE 145
P+ R R+G+ + Q+ + F +++ +N++A ++ + ++ + E ++S LK
Sbjct: 74 YDRGVDPVSIRRRVGMVF--QKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKR 131
Query: 146 FNITKWRHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
+ W V A LSGGQ++RL IAR++ P IL+DEP + +DP++ I
Sbjct: 132 --VALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE 189
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257
LI +L + I+I HN+ + + D + G ++ G ++I + ++ Y+
Sbjct: 190 LIEELKEK-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTEDYIT 248
Query: 258 DRF 260
RF
Sbjct: 249 GRF 251
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 83.2 bits (206), Expect = 6e-17
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 34/196 (17%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+ V L +KPG+I+ LLGPNGAGK+T ++ GL+ D G IK R +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK------------RNGK 66
Query: 100 LGISYLPQEASI--FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL-A 156
L I Y+PQ+ + LTV + ++D +L + H++ A
Sbjct: 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED----------ILPALKRVQAGHLIDA 116
Query: 157 PL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD---PVAISD-IHVLIRDLASRGIG 210
P+ LSGG+ +R+ +AR+L++ P ++LDEP GVD VA+ D I L R+L
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL---DCA 173
Query: 211 ILITDHNVHEILTLID 226
+L+ H++H ++ D
Sbjct: 174 VLMVSHDLHLVMAKTD 189
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 83.2 bits (206), Expect = 7e-17
Identities = 61/256 (23%), Positives = 117/256 (45%), Gaps = 42/256 (16%)
Query: 31 LTKKYNS-----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
+ K +N + + V + + GE + ++G G+GKTTF + L+ D+G+I+
Sbjct: 8 IVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67
Query: 86 GND-----------------ITKMPMYR--------RARLGISYLPQEASIFRGLTVEEN 120
D + + ++ R R+G+ + E +F T+E++
Sbjct: 68 FKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKD 126
Query: 121 IL---AVLEVYEKDKKKRHEKLDSL--LKEFNITKWRHVLAPL-LSGGQRRRLEIARSLV 174
I+ + V +++ KKR K L L E + + +P LSGGQ+RR+ +A L
Sbjct: 127 IIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR-----SPFELSGGQKRRVALAGILA 181
Query: 175 SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234
P +++ DEP AG+DP + +I + +L +G I++ H++ +L R G
Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241
Query: 235 GVLAHGTVQEIIDNQD 250
++ G +I+ +
Sbjct: 242 KIIKDGDTYDILSDNK 257
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 82.8 bits (205), Expect = 8e-17
Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 19/226 (8%)
Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP-MY 95
V V+KG+ + PGE+V L+GP+G+GK+T ++ L G + +DG + + Y
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552
Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL---DSLLKEFNITKWR 152
++ + + QE +F G +V ENI L ++ K + EF
Sbjct: 553 LHRQVAL--VGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT 609
Query: 153 HV--LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
V LSGGQ++R+ IAR+LV P ++LDE + +D + R ASR +
Sbjct: 610 EVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD-AECEQLLQESRSRASRTV- 667
Query: 211 ILITDHNVHEILTLIDRA---YIIHAGGVLAHGTVQEIIDNQDVRR 253
+LI L+ ++RA ++ G V+ GT ++++++Q +
Sbjct: 668 LLIAHR-----LSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 82.3 bits (203), Expect = 1e-16
Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 27/232 (11%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS-------GSIKIDGN 87
Y VK V + + +I ++GP+G GKTT + + D G I G
Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM--NDHIPGFRVEGKIYFKGQ 70
Query: 88 DITK----MPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDSL 142
DI + YR+ ++G+ + Q+ + F +++ +N+ ++ K K K ++
Sbjct: 71 DIYDPQLDVTEYRK-KVGMVF--QKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEES 126
Query: 143 LKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
LK+ + W V + L LSGGQ++RL IAR+L P ILLDEP + +DP+A
Sbjct: 127 LKKAAL--WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQR 184
Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
I L+ +L S I+I HN+ + + + D ++ G ++ +G +EI++
Sbjct: 185 IEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 82.1 bits (203), Expect = 1e-16
Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 27/247 (10%)
Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM-----TGL 74
++ LS L Y +KG+D+ + +I L+GP+G+GK+T+ + T
Sbjct: 15 PEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTID 74
Query: 75 ICADSGSIKIDGNDITK--MPMYR-RARLGISYL---PQEASIFRGLTVEENILAVLEVY 128
I +G I G DI + + +Y R +G+ + P SI+ ENI LE
Sbjct: 75 IARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIY------ENITFALERA 128
Query: 129 -EKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYIL 181
KDKK E +++ LK+ + W V L LSGGQ++RL IAR++ P +L
Sbjct: 129 GVKDKKVLDEIVETSLKQAAL--WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILL 186
Query: 182 LDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
+DEP + +DP++ + + +L I++T HN+ + D + G ++ +
Sbjct: 187 MDEPASALDPISTMQLEETMFELKKNYTIIIVT-HNMQQAARASDYTAFFYLGDLIEYDK 245
Query: 242 VQEIIDN 248
+ I N
Sbjct: 246 TRNIFTN 252
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 82.2 bits (203), Expect = 1e-16
Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 15/198 (7%)
Query: 29 CSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS--GSIKIDG 86
T++ ++ GV PGEI+ +LGP+G+GK+T + G I ++ G+I +
Sbjct: 72 SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN 131
Query: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL---DSLL 143
TK + R ++ Q+ ++ LTV E ++ + + EK+ +S++
Sbjct: 132 RKPTKQILKR-----TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVI 186
Query: 144 KEFNITKWRHVLAPL-----LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
E +TK + + +SGG+R+R+ IA ++ PS ++LDEP +G+D A +
Sbjct: 187 SELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV 246
Query: 199 VLIRDLASRGIGILITDH 216
+ + LA +G I+ + H
Sbjct: 247 LTLGSLAQKGKTIVTSMH 264
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 82.0 bits (203), Expect = 1e-16
Identities = 66/217 (30%), Positives = 115/217 (52%), Gaps = 22/217 (10%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
++TK Y V + K ++L + GE V +GP+G GK+T M+ GL SG + I +
Sbjct: 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
+P R G+ + Q +++ L+V EN+ L++ K++ +++++ + + +
Sbjct: 68 NDVPPAER---GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE---VL 121
Query: 150 KWRHVL---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-------VAISDIHV 199
+ H+L LSGGQR+R+ I R+LV+ PS LLDEP + +D + IS +H
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH- 180
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
+ L I +T H+ E +TL D+ ++ AG V
Sbjct: 181 --KRLGR--TMIYVT-HDQVEAMTLADKIVVLDAGRV 212
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 81.9 bits (203), Expect = 1e-16
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 22/211 (10%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
V+ GEI+ L+GPNGAGK+T M GL+ SGSI+ G + AR +YL Q
Sbjct: 19 VRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHR-AYLSQ 76
Query: 108 EAS------IFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSG 161
+ + +F+ LT+ + E L+ + + + LSG
Sbjct: 77 QQTPPFAMPVFQYLTLHQPDKTRTEAVAS-------ALNEVAEALGLDDKLGRSVNQLSG 129
Query: 162 G--QRRR-----LEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILIT 214
G QR R L++ + +LLDEP +D + + L+ +L +GI ++++
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189
Query: 215 DHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
H+++ L DR +++ G +LA G E+
Sbjct: 190 SHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 81.9 bits (202), Expect = 1e-16
Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 23/243 (9%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89
Y +KG+DL EI L+GP+G GK+T+ M LI +G++ + G +I
Sbjct: 15 YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI 74
Query: 90 TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145
R ++G+ + Q+ + F ++ EN++ L + KDK E +++ LK+
Sbjct: 75 YAPNEDVVQLRKQVGMVF--QQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ 131
Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
I W V L LSGGQ++R+ IAR L P ILLDEP + +DP++ + I
Sbjct: 132 AAI--WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257
++ +L + IL+T H++H+ + D+ G ++ +++ N + Y+
Sbjct: 190 MLLELRDQYTIILVT-HSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKETEDYIT 248
Query: 258 DRF 260
RF
Sbjct: 249 GRF 251
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 81.6 bits (202), Expect = 2e-16
Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 31/281 (11%)
Query: 1 MKSIRNYLGIEMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPN 60
M S L N + + + L +L Y + + + + + +GP+
Sbjct: 1 MISHGITLMALPLLDVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPS 60
Query: 61 GAGKTTF---FYMMTGLI--CADSGSIKIDGNDI----TKMPMYRRARLGISYL---PQE 108
G GK+T F M L+ C G I++DG +I + RR R+G+ + P
Sbjct: 61 GCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR-RVGMVFQRPNPFP 119
Query: 109 ASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSG 161
SI+ EN++ L + +++ E ++ L+ + W V L LSG
Sbjct: 120 KSIY------ENVVYGLRLQGINNRRVLDEAVERSLRGAAL--WDEVKDRLHENAFGLSG 171
Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEI 221
GQ++RL IAR++ P +LLDEP + +DP++ I LI +L S+ I+I HN+ +
Sbjct: 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK-YTIVIVTHNMQQA 230
Query: 222 LTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLGDRF 260
+ D ++ G ++ +G + + ++ Y+ R+
Sbjct: 231 ARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDYITGRY 271
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 81.2 bits (200), Expect = 2e-16
Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 6/219 (2%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI---KIDGNDITKMPMYRR 97
++ ++L +K GE +G++G NG+GK+T + GL+ G + ID D +K+ R+
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
+GI + E F G TVEE++ E + +++D L E + K+RH
Sbjct: 78 L-VGIVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135
Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217
LSGGQ + + +A L P ++ DE + +DP + + I+ L +G I+ HN
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195
Query: 218 VHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYL 256
+ E L DR ++ G ++ G + ++ + ++ L L
Sbjct: 196 LEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGL 233
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 81.1 bits (201), Expect = 2e-16
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 21/223 (9%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-CAD-SGSI 82
LL ++TK + V + V L V+ GEIV L G NGAGK+T +++G+ G I
Sbjct: 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64
Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK---DKKKRHEKL 139
+G ++ + R GI+ + QE ++ + L+V ENI E+ D + +
Sbjct: 65 IFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA 124
Query: 140 DSLLKEFNI-----TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
LL + + T + L GQ++ +EIA++L ++LDEP A +
Sbjct: 125 QKLLAQLKLDINPATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTA---SLTE 176
Query: 195 SDIHVL---IRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234
S+ VL IRDL + GI + H ++E+ + D +I G
Sbjct: 177 SETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219
Score = 78.4 bits (194), Expect = 2e-15
Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 22/225 (9%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA----DSGSIKIDGNDITKMPMY 95
V V ++ GEI+G+ G GAG+T ++ L A G I IDG +
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTE---LVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333
Query: 96 RRARLGISYLPQEAS---IFRGLTVEENI-LAVLEVYEK----DKKKRHEKLDSLLKEFN 147
+ GI+ +P++ I + V +NI LA L+ + D + + ++
Sbjct: 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393
Query: 148 ITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ K + LSGG +++ +A+ L+ P ++LDEP G+D A +I+ LI L
Sbjct: 394 V-KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLA----HGTVQEII 246
+G+ I++ + E+L L DR ++H G + H QE +
Sbjct: 453 QQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQEQV 497
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 80.4 bits (198), Expect = 4e-16
Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 14/243 (5%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVD---LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77
SKD +L S T + + K ++ L K ++ ++G G+GK+T + GLI +
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 78 DSGSI-----KIDGNDITKMPMYRRAR--LGISYLPQEASIFRGLTVEENILAVLEVYEK 130
++G I N + K+ +R R +G+ + E +F+ T+E++I +
Sbjct: 64 ETGQTIVGDYAIPAN-LKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPVNLGE 121
Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
+K++ ++K+ LLK + + +P LSGGQ+RR+ +A + + ++LDEP G+
Sbjct: 122 NKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181
Query: 190 DPVAISD-IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
DP D I++ R I++ HN+ ++L + D ++H G V++ G+ EI N
Sbjct: 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241
Query: 249 QDV 251
Q++
Sbjct: 242 QEL 244
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 80.6 bits (199), Expect = 4e-16
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 23/252 (9%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSG 80
+ A L+ Y + + L + ++ L+GP+G GK+TF M LI G
Sbjct: 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG 66
Query: 81 SIKIDGNDITKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRH 136
I +DG +I + R R+G+ + Q+ + F ++ EN+ L V KDK
Sbjct: 67 EILLDGENIYDPHVDVVELRRRVGMVF--QKPNPFPK-SIFENVAYGLRVNGVKDKAYLA 123
Query: 137 EKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
E+++ L+ + W V L LSGGQ++RL IAR+L P +L+DEP + +D
Sbjct: 124 ERVERSLRHAAL--WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
Query: 191 PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
P+A I LI +L +R I+I HN+ + + D + G ++ G ++I
Sbjct: 182 PIATQKIEELIHELKAR-YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR 240
Query: 251 VRRL--YLGDRF 260
++ Y+ RF
Sbjct: 241 EKQTEDYITGRF 252
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 80.5 bits (198), Expect = 4e-16
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 27/223 (12%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-----RA 98
+DL VK G L+G G+GK+T + GL+ G + + ++ + R
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEV--------YEKDKKKRHEKLD--SLLKEFNI 148
++G+ + E+ +F EE +L + EK +K EKL+ L EF
Sbjct: 85 KVGVVFQFPESQLF-----EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF-- 137
Query: 149 TKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207
W +P LSGGQ RR+ IA L P ++LDEP AG+DP A ++ L +
Sbjct: 138 --WEK--SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193
Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
G +++ H + ++ D Y++ G +++ GT ++ D
Sbjct: 194 GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 80.4 bits (198), Expect = 4e-16
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 33/233 (14%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICAD--SGSIKIDGNDI 89
Y +K +++ V ++ L+GP+G GK+TF F M L + G I + +++
Sbjct: 26 YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85
Query: 90 TKM-----PMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKR---HEK 138
+ P+ R R+ + + P SIF EN+ L + + K+R E+
Sbjct: 86 NILSPEVDPIEVRMRISMVFQKPNPFPKSIF------ENVAYGLRI--RGVKRRSILEER 137
Query: 139 LDSLLKEFNITKWRHV------LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
+++ L+ N W V LA LSGGQ++RL IAR+L + P +L DEP + +DP+
Sbjct: 138 VENALR--NAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195
Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
A + I LI DL ++ + ILI HN+ + + D ++ G ++ G I
Sbjct: 196 ATASIEELISDLKNK-VTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 80.4 bits (198), Expect = 5e-16
Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 23/267 (8%)
Query: 11 EMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM 70
E E +K+ +L L+ Y V + + ++ + L+GP+G GK+TF
Sbjct: 7 EKIEIAPFPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRS 66
Query: 71 ---MTGLI--CADSGSIKIDGNDITKMPM-YRRARLGISYLPQEASIFRGLTVEENILAV 124
M LI G I +G +I + R I + Q+ + F ++ NI
Sbjct: 67 INRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHA 125
Query: 125 LEVYEKDKKKRHEKLDSLLKEFNITK---WR------HVLAPLLSGGQRRRLEIARSLVS 175
L+ Y +++K LD +++E ++TK W H A LSGGQ++RL IAR+L
Sbjct: 126 LK-YAGERRK--SVLDEIVEE-SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181
Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGG 235
P+ +LLDEP + +DP++ + I LI +L I+I HN+ + L + DR G
Sbjct: 182 KPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240
Query: 236 VLAHGTVQEIIDNQDVRRL--YLGDRF 260
++ + ++I + ++ Y+ RF
Sbjct: 241 LVEYDQTEQIFTSPKQQKTEDYINGRF 267
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 80.3 bits (198), Expect = 5e-16
Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 13/237 (5%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
LL L+K Y + V + PGE++G++G +G+GK+T + G + D G+
Sbjct: 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 85 DGND-----ITKMPMYRRARL-----GISYLPQEASIFRGLTVEENILA-VLEVYEKDKK 133
+ ++ R RL G + + ++ NI ++ + +
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122
Query: 134 KRHEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
L+E I R P SGG ++RL+IAR+LV+ P + +DEP G+D
Sbjct: 123 NIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182
Query: 193 AISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ + L+R L G+ ++I H++ L R ++ G V+ G +++D+
Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 80.1 bits (198), Expect = 5e-16
Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+L L Y ++ ++L ++ GE++ +LGP+G GKTT ++ G + GSI +
Sbjct: 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
DG + P R G+ + Q + V++N+ L++ +K +R E +LK
Sbjct: 61 DGKPVEG-PGAER---GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
+ + LSGGQR+R+ IAR+L + P +LLDEPF +D
Sbjct: 115 KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 79.6 bits (197), Expect = 8e-16
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 43/223 (19%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+++ L ++PG+ V L+G +G+GK+T ++ GL SG I DG ++P R
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP---REV 550
Query: 100 L--GISYLPQEASIFRGLTVEENIL--------AVLEVYEKDK------KKRHEKLDSLL 143
L ++ + Q+ +F G TV +N+ A L KD R D+ L
Sbjct: 551 LANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL 609
Query: 144 KE--FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
E N LSGGQR+RLEIAR+LV PS ++LDE + +DP I
Sbjct: 610 AEGGAN-----------LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII---D 655
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
+L RG +I H + T+ D II VL G V +
Sbjct: 656 DNLRRRGCTCIIV---AHRLSTIRDCDEII----VLERGKVVQ 691
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 79.4 bits (196), Expect = 8e-16
Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 20/232 (8%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLICAD--SGSIKID 85
L Y S + V+ V+L ++P + +GP+G GK+T M +I G + +D
Sbjct: 10 LNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69
Query: 86 GNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDS 141
G D+ P+ R +G+ + Q + F +++ +N++A L++ ++KK E ++
Sbjct: 70 GEDLYGPGVDPVAVRRTIGMVF--QRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEK 127
Query: 142 LLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
L+ N+ W V L LSGGQ++RL IAR++ P +L+DEP + +DP++
Sbjct: 128 SLRGANL--WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185
Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
I LI +L I+I HN+ + + D+ + G + EI D
Sbjct: 186 AIEDLINELKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 78.8 bits (194), Expect = 1e-15
Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89
Y VK V+ + + ++GP+G GK+TF M LI C +G++ DG DI
Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI 108
Query: 90 ----TKMPMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
T + R+ ++G+ + P SIF + + + DKK+ E ++
Sbjct: 109 YGKFTDEVLLRK-KIGMVFQKPNPFPKSIFDNIAYGPRLHGI-----NDKKQLEEIVEKS 162
Query: 143 LKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
L++ + W V L LSGGQ++RL +AR+L P +LLDEP + +DP A +
Sbjct: 163 LRKAAL--WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAK 220
Query: 197 IHVLIRDLASRG-IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL- 254
I LI++L RG I+I HN+ + + D + G ++ H ++ N R
Sbjct: 221 IEDLIQEL--RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278
Query: 255 -YLGDRFA 261
Y+ RF+
Sbjct: 279 DYITGRFS 286
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 78.3 bits (193), Expect = 2e-15
Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 16/226 (7%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89
Y +K ++L + ++ L+GP+G GK+T M LI +G + +DG DI
Sbjct: 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNI 148
R+ + + Q+ + F +++ EN+ L KDKK E ++ L+ +
Sbjct: 73 YGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL 131
Query: 149 TKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
W V L LSGGQ++RL IAR++ P IL+DEP + +DP+A I L+
Sbjct: 132 --WDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME 189
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+L + I+I H++ + + DR G ++ H Q I N
Sbjct: 190 EL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 78.2 bits (192), Expect = 2e-15
Identities = 56/215 (26%), Positives = 111/215 (51%), Gaps = 4/215 (1%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
+K + V + GV + GE V ++G NG+GK+T ++ GL G +KIDG +T
Sbjct: 15 EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE 74
Query: 93 PMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW 151
++ R ++G+ + + F G TVE+++ +E +++ +++D L N+ +
Sbjct: 75 NVWNLRRKIGMVFQNPDNQ-FVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF 133
Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIG 210
+ LSGGQ++R+ +A + P I+LDE + +DP +I +I ++ + +
Sbjct: 134 KTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT 193
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+L H++ E + DR ++ AG ++ E+
Sbjct: 194 VLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 78.3 bits (193), Expect = 2e-15
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 21/242 (8%)
Query: 22 KDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--C 76
+ +L L+ YN + V L P EI L+GP+G+GK+T M L
Sbjct: 2 TEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEV 61
Query: 77 ADSGSIKIDGNDI---TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDK 132
+GSI +G++I + R +G+ + Q+ + F +++ EN++ L + KDK
Sbjct: 62 TITGSIVYNGHNIYSPRTDTVDLRKEIGMVF--QQPNPFP-MSIYENVVYGLRLKGIKDK 118
Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPF 186
+ E ++ LK +I W V L LSGGQ++R+ IAR L + P ILLDEP
Sbjct: 119 QVLDEAVEKSLKGASI--WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176
Query: 187 AGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+ +DP++ I + L +L+T ++ + + DR G ++ + +++
Sbjct: 177 SALDPISAGKIEETLLGLKDDYTMLLVT-RSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235
Query: 247 DN 248
N
Sbjct: 236 MN 237
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 77.8 bits (192), Expect = 2e-15
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 24 SLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD- 78
+LL + + Y S V V+KG+ L + GE+V ++G +G+GK+T +M L C D
Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKST---LMNILGCLDK 59
Query: 79 --SGSIKIDGNDITKM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-K 130
SG+ ++ G D+ + RR G ++ Q + LT +N+ V VY
Sbjct: 60 PTSGTYRVAGQDVATLDADALAQLRREHFG--FIFQRYHLLSHLTAAQNV-EVPAVYAGL 116
Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
++K+R + LL+ + LSGGQ++R+ IAR+L++ IL DEP +D
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 191 PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
+ ++ ++ L RG ++I H+ + +R I G ++
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VAAQAERVIEIRDGEIVR 223
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 77.6 bits (191), Expect = 3e-15
Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 37/250 (14%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM------------MTGLICADSGSI 82
Y + +K ++L + E+ ++GP+G GK+TF +TG + + +I
Sbjct: 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81
Query: 83 KIDGNDITKMPMYRRARLGISY-----LPQEASIFRGLTVEENILAVLEVY-EKDKKKRH 136
D+ ++ R +G+ + PQ SIF +N+ ++ K+KKK
Sbjct: 82 LKGKVDLVEL----RKNIGMVFQKGNPFPQ--SIF------DNVAYGPRIHGTKNKKKLQ 129
Query: 137 EKLDSLLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
E ++ LK+ ++ K R H A LSGGQ++RL IAR+L + P +L+DEP + +DPV
Sbjct: 130 EIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPV 189
Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252
+ I LI L + I+I HN+ + + D+ + G ++ ++ N D +
Sbjct: 190 STRKIEELILKLKEK-YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQ 248
Query: 253 RL--YLGDRF 260
R Y+ +F
Sbjct: 249 RTLDYITGKF 258
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 77.4 bits (190), Expect = 3e-15
Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 20/237 (8%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-D 88
+L+ Y++ +++GV + + ++ ++GP+G GK+TF + + ++++G +
Sbjct: 12 NLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM-NELESEVRVEGRVE 70
Query: 89 ITKMPMYRRARLGISYLPQEASIFRG------LTVEENI-LAVLEVYEKDKKKRHEKLDS 141
+Y R R+ ++ L ++ S+ ++V +N+ V V + K + + ++S
Sbjct: 71 FFNQNIYER-RVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVES 129
Query: 142 LLKEFN----ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
LK+ + I H A LSGGQ++RL IAR+L P +L+DEP G+DP+A +
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189
Query: 198 HVLIRDLASRG-IGILITDHNVHEILTLIDRAYIIHA-----GGVLAHGTVQEIIDN 248
LI+ L R + ++I HN+H++ L D G ++ G ++I ++
Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS 246
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 77.5 bits (191), Expect = 4e-15
Identities = 62/220 (28%), Positives = 118/220 (53%), Gaps = 7/220 (3%)
Query: 31 LTKKYNS---VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN 87
LT KY Y + V +VK GE + ++G NG+GK+T ++ GL+ A+SG I IDG+
Sbjct: 10 LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69
Query: 88 DITKMPMY-RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
+T+ ++ R ++G+ + + F G TVE+++ LE ++ E+++ L+
Sbjct: 70 LLTEENVWDIRHKIGMVFQNPDNQ-FVGATVEDDVAFGLENKGIPHEEMKERVNEALELV 128
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
+ ++ LSGGQ++R+ IA ++ P I+LDE + +DP ++ I+ +
Sbjct: 129 GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188
Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ ++ H++ E+ L DR ++ G V + T +E+
Sbjct: 189 DYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPREL 227
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 77.0 bits (190), Expect = 4e-15
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 11/183 (6%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN----DITKMPMY 95
V+K V L V GE V L GP+GAGK+T + DSG I + D+ +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 96 RRA---RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
R I Y+ Q + ++ E + L ++ + LL NI +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL 142
Query: 153 HVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRG--- 208
L P SGG+++R+ IAR ++ +LLDEP A +D + LI + +RG
Sbjct: 143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAAL 202
Query: 209 IGI 211
IGI
Sbjct: 203 IGI 205
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 76.2 bits (188), Expect = 7e-15
Identities = 56/220 (25%), Positives = 108/220 (49%), Gaps = 5/220 (2%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
LT Y + ++ + L + G+I L+GPNG GK+T L+ SG++ + I+
Sbjct: 8 LTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKDKKKRHEKLDSLLKEF 146
+ + AR ++ LPQ G+TV E + L ++ + + + +++ +++
Sbjct: 68 MLSSRQLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT 126
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
I LSGGQR+R +A L +LLDEP +D ++ L+R+L +
Sbjct: 127 RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+G ++ H++++ D ++ G V+A GT +E++
Sbjct: 187 QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 76.4 bits (188), Expect = 7e-15
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 20/226 (8%)
Query: 51 GEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMYRRARLGISYL 105
G V L+G G+GK+T L+ SG+I I G IT K R ++ + +
Sbjct: 33 GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ 92
Query: 106 PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL----LKEFNITKWRHVLAPL-LS 160
EA +F +++ + + + + L L L E I+K +P LS
Sbjct: 93 FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147
Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220
GGQ RR+ IA + P + LDEP AG+DP ++ L +D G +++ HN+ +
Sbjct: 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207
Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDNQD-VRRLYLGD----RFA 261
+ D ++ G ++ H + +EI +++ +++ YL + RFA
Sbjct: 208 VAEYADDVLVLEHGKLIKHASPKEIFSDKEWLKKHYLDEPATSRFA 253
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 76.4 bits (188), Expect = 8e-15
Identities = 63/267 (23%), Positives = 117/267 (43%), Gaps = 42/267 (15%)
Query: 17 ENRASKDSLLSACSLTKKYNS-----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71
N S D +L +L ++ + + + + +I ++G +G+GK+T
Sbjct: 13 PNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHF 72
Query: 72 TGLICADSGSIKI---------DGNDITKMPMYR--------RARLGISYLPQEASIFRG 114
GLI + G+I++ + +++ P + R R+ + + E +F+
Sbjct: 73 NGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132
Query: 115 LTVEENIL---AVLEVYEKDKKKRHEK------LDSLLKEFNITKWRHVLAPL-LSGGQR 164
T+E++I+ L V + + KK + LD E + P LSGGQ+
Sbjct: 133 -TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS---------PFGLSGGQK 182
Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTL 224
RR+ IA L P ++ DEP AG+DP ++ LI D + + + H + +L +
Sbjct: 183 RRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEV 242
Query: 225 IDRAYIIHAGGVLAHGTVQEIIDNQDV 251
D ++ G +L GT EI +Q +
Sbjct: 243 ADEVIVMDKGKILKTGTPYEIFTDQHI 269
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 75.5 bits (186), Expect = 1e-14
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 7/209 (3%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
++K + V + V+L V+P I L+G NGAGK+T + G+ DSGSI G +I
Sbjct: 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-----DKKKRHEKLDSLLKE 145
GIS + QE ++ +V +N+ L Y D+ K + ++ E
Sbjct: 64 FKSSKEALENGISMVHQELNLVLQRSVMDNMW--LGRYPTKGMFVDQDKMYRDTKAIFDE 121
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+I LS Q + +EIA++ +++DEP + + ++ + +IR L
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAG 234
RG GI+ H + EI L D I+ G
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDG 210
Score = 60.9 bits (148), Expect = 3e-10
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 22/224 (9%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
++ V + GEI+G+ G GA +T + G+ +G+I + G I
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 101 GISYLPQE---ASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW------ 151
G + + +E I+ L + N L + K L + + T+W
Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSL----ISNIRNYKNKVGLLDNSRMKSDTQWVIDSMR 379
Query: 152 -----RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
LSGG ++++ I R L++ P ++LDEP G+D A +I+ LI +LA
Sbjct: 380 VKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439
Query: 207 RGIGILITDHNVHEILTLIDRAYIIH----AGGVLAHGTVQEII 246
+ GI+I + E+L + DR ++ AG V T Q I
Sbjct: 440 KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEI 483
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 75.4 bits (185), Expect = 1e-14
Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 29/251 (11%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLIC--ADSGSIKI 84
+L ++ +++K V+L + + L+GP+G GK+TF M LI G I +
Sbjct: 8 NLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL 67
Query: 85 DGNDITKMPM---YRRARLGISYL---PQEASIFRGLTVEENILAVLEVY-EKDKKKRHE 137
DG DI + R ++G+ + P SIF +N+ L ++ E D+ E
Sbjct: 68 DGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIF------DNVAYGLRIHGEDDEDFIEE 121
Query: 138 KLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
+++ LK + W V L LSGGQ++RL IAR++ P IL+DEP + +DP
Sbjct: 122 RVEESLKAAAL--WDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP 179
Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
++ + I LI L I+I HN+ + + G ++ G +I N
Sbjct: 180 ISTTKIEDLIHKLKED-YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKD 238
Query: 252 RRL--YLGDRF 260
+R Y+ RF
Sbjct: 239 KRTEDYITGRF 249
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 75.0 bits (185), Expect = 2e-14
Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 19/241 (7%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICADS--GSIKIDGNDI 89
Y + +K ++L + ++ +GP+G GK+T F M L G I +DG +I
Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82
Query: 90 --TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKE 145
K + RA++G+ + Q+ + F +++ +NI + ++EK + + E+++ L +
Sbjct: 83 LTPKQDIALLRAKVGMVF--QKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTK 139
Query: 146 ---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
+N K + H LSGGQ++RL IAR + P +LLDEP + +DP++ I LI
Sbjct: 140 AALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELI 199
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLGDR 259
+L + ++I HN+ + D ++ G ++ G I ++ Y+ R
Sbjct: 200 TEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTEDYITGR 258
Query: 260 F 260
F
Sbjct: 259 F 259
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 75.0 bits (184), Expect = 2e-14
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 16/218 (7%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRR 97
V+ G+ +V P E VG++G GAGK++ + ++ + G I ID D+ K + RR
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE------FNITKW 151
+S +PQ +F G TV NI E + D + E+ + +K+ F +
Sbjct: 1311 V---LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALER--AHIKDVIDRNPFGLDAE 1364
Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
S GQR+ L +AR+L+ ++LDE A VD S I IR+ + +
Sbjct: 1365 VSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE-EFKSCTM 1423
Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
L+ H ++ I+ D+ ++ +G VL + + QE++
Sbjct: 1424 LVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460
Score = 56.1 bits (135), Expect = 8e-09
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 25/212 (11%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTG-LICADSGSIKIDGNDITKMPMYRRARLGI 102
++L + G +V ++G G GKT+ M G L A++ S+ I G+ +
Sbjct: 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGS--------------V 681
Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL-----AP 157
+Y+PQ + IF TV ENIL + +E ++ R + +L + ++ R +
Sbjct: 682 AYVPQVSWIFNA-TVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739
Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASRGIGILITDH 216
+SGGQ++R+ +AR++ S + D+P + +D VA ++D +L+T
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT-- 797
Query: 217 NVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
N L L+DR ++ G + GT E+ +
Sbjct: 798 NQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 74.7 bits (183), Expect = 2e-14
Identities = 69/248 (27%), Positives = 116/248 (46%), Gaps = 26/248 (10%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-DITKMP 93
YN+ ++G+ + + ++ ++GP+G GK+TF + I G +K++G D
Sbjct: 17 YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEGPVKVEGVVDFFGQN 75
Query: 94 MY------RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK-KRHEKLDSLLKEF 146
+Y R R I + Q + F +++ EN+ + + K + E ++S LK
Sbjct: 76 IYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGA 134
Query: 147 NITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
+ W+ V L LSGGQ++RL IAR+L P +L+DEP + +DP+A + L
Sbjct: 135 AL--WQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL 192
Query: 201 IRDLASRGIGILITDHNVHEILTLIDRAYIIHA-----GGVLAHGTVQEIIDNQ-DVR-R 253
I L S + I I HN+ + + D G ++ G +I N D R R
Sbjct: 193 IHSLRSE-LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRTR 251
Query: 254 LYLGDRFA 261
Y+ RF
Sbjct: 252 DYVSGRFG 259
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 74.4 bits (183), Expect = 3e-14
Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 19/220 (8%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL----ICADSGSIKIDGNDI----- 89
VVK + ++PGE +GL+G +G+GK+T TGL + G I DG +
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKST-----TGLALLRLINSQGEIWFDGQPLHNLNR 354
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD--KKKRHEKLDSLLKEFN 147
++ R R+ + + +S+ L V + I L V++ +R +++ ++++E
Sbjct: 355 RQLLPVRH-RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVG 413
Query: 148 I-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
+ + RH SGGQR+R+ IAR+L+ PS I+LDEP + +D + I L++ L
Sbjct: 414 LDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473
Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ + L H++H + L + ++ G V+ G + +
Sbjct: 474 KHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
Score = 49.7 bits (119), Expect = 7e-07
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 27/227 (11%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGNDITKM-- 92
VV V L ++ GE + L+G +G+GK+ + L+ + SG I+ G +
Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83
Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLE--VYE--------KDKKKRHEKLDSL 142
R R + A IF+ V N L LE +YE + + R E L +
Sbjct: 84 QTLRGVRGN-----KIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEIL-NC 137
Query: 143 LKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
L I + L LSGG+R+R+ IA +L++ P ++ DEP +D + I
Sbjct: 138 LDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ 197
Query: 200 LIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
L+R+L +G+L HN+ + L DR ++ G + +
Sbjct: 198 LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 74.4 bits (182), Expect = 3e-14
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 16/235 (6%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD------- 78
++A +LT + V+ V + + L+GP G+GKTTF + + D
Sbjct: 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--NDKVSGYRY 79
Query: 79 SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138
SG + + G I R + L Q + F +++ +N+LA + ++ +K
Sbjct: 80 SGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRG 138
Query: 139 L-DSLLKE---FNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
+ + L E ++ K R +P LSGGQ++ L +AR+L P +LLDEP + +DP
Sbjct: 139 VAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198
Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
I IR LA R + ++I HN+ + + DRA + G ++ G +++ +
Sbjct: 199 TEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 74.3 bits (182), Expect = 3e-14
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89
Y +K V + + + L+GP+G GK+TF M LI C G + I+G DI
Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81
Query: 90 TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE- 145
+ + R +G+ + Q+ + F +++ +N+ ++ +KK +++ L+
Sbjct: 82 YEPDVDVVELRKNVGMVF--QKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSA 138
Query: 146 --FNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
++ T R L LSGGQ++RL IAR+L P IL DEP + +DP++ + I LI
Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM 198
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+L + I+I HN+ + + D G ++ G ++I N
Sbjct: 199 NL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 73.8 bits (182), Expect = 5e-14
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 30/172 (17%)
Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82
D ++ A +L+K + ++ + + PG IVG++GPNGAGK+T F M+TG DSG+I
Sbjct: 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 83 KIDGNDITKMPMYRRARLGISYLPQE-ASIFRGLTVEENI---LAVLEVYEKDKKKRHEK 138
KI + K ++Y+ Q ++ TV E I L ++++ +++ R
Sbjct: 380 KI--GETVK----------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR--- 424
Query: 139 LDSLLKEFNIT-----KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEP 185
+ + FN K LSGG+R R+ +A++L S + +LLDEP
Sbjct: 425 --AYVGRFNFKGSDQQK----KVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470
Score = 59.9 bits (146), Expect = 6e-10
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 68/201 (33%)
Query: 31 LTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
++K ++K + L PG +G+LG NGAGK+T +M G+ D + +G +
Sbjct: 10 VSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV---DK---EFNG-EA 62
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKL--------- 139
P + + YLPQE + TV EN+ V E+ KD R ++
Sbjct: 63 RPAPGIK-----VGYLPQEPQLDPTKTVRENVEEGVAEI--KDALDRFNEISAKFAEPDA 115
Query: 140 --DSLLKE---------------------------------FNITKWRHVLAPLLSGGQR 164
D+LL E ++TK LSGG+R
Sbjct: 116 DMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK--------LSGGER 167
Query: 165 RRLEIARSLVSFPSYILLDEP 185
RR+ + R L+S P +LLDEP
Sbjct: 168 RRVALCRLLLSKPDMLLLDEP 188
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 73.3 bits (180), Expect = 5e-14
Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 37/228 (16%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI-- 75
SK+ ++S ++T Y + VK V + G++ L+GP+G GK+T M LI
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
Query: 76 CADSGSIKIDGNDI---TKMPMYRRARLGISYL---PQEASIFRGLTVEENIL--AVLEV 127
C+ G + DG D+ P+ R R+G+ + P SI+ ENI A +
Sbjct: 69 CSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIY------ENIAFGARING 122
Query: 128 YEKDKKKRHEKLDSLLKEFNITK---WRHVLAPL------LSGGQRRRLEIARSLVSFPS 178
Y D +D L+ E ++ K W L LSGGQ++RL IAR++ P
Sbjct: 123 YTGD-------MDELV-ERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPE 174
Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLID 226
IL+DEP + +DP++ I + +L + I+I HN+ + + + D
Sbjct: 175 VILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSD 221
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 73.2 bits (180), Expect = 6e-14
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 14/225 (6%)
Query: 34 KYNS--VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI-----KIDG 86
+Y S + +K V + G+ ++G NG+GK+T +M G+ SG I I
Sbjct: 16 QYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD 75
Query: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
++ K+ R +GI + + F G V+ ++ LE + + H ++ LK+
Sbjct: 76 DNFEKL----RKHIGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQV 130
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-A 205
++ + LSGGQ++R+ IA L PS I+LDE + +DP A ++ L+R + +
Sbjct: 131 DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS 190
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
I I+ H++ E + D +++ G V GT EI D+ +
Sbjct: 191 EHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAE 234
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 73.2 bits (180), Expect = 6e-14
Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 27/215 (12%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-- 87
+++K+Y V+ +DL++ G+ V ++G +G GK+T ++ GL +G + + G
Sbjct: 17 AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAP 75
Query: 88 -----DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
+ T++ M++ ARL LP + V +N+ L + + + + L ++
Sbjct: 76 LAEAREDTRL-MFQDARL----LPWK-------KVIDNV--GLGLKGQWRDAALQALAAV 121
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
+W LSGGQ++R+ +AR+L+ P +LLDEP +D + ++ LI
Sbjct: 122 GLADRANEW----PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177
Query: 203 DL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
L G +L+ H+V E + + DR +I G +
Sbjct: 178 SLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 72.5 bits (178), Expect = 1e-13
Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 17/219 (7%)
Query: 43 GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-----R 97
V+L ++ G +G G+GK+T ++ GL GS+++D IT + R
Sbjct: 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE----FNITKWRH 153
++G+ + E+ +F EE +L + ++ E+ ++L +E I++
Sbjct: 85 KKVGLVFQFPESQLF-----EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
P LSGGQ RR+ IA L P ++LDEP AG+DP ++ L + L G+ I+
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
+ H + ++ D Y++ G ++ G ++I QDV
Sbjct: 200 LVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF--QDV 236
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 72.5 bits (178), Expect = 1e-13
Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 28/225 (12%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP-MYRRA 98
V+ G+ + P E VG++G GAGK++ + ++ + G I IDG DI+K M R
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313
Query: 99 RLGISYLPQEASIFRGLTV--------EENILAVLEVYE----KDKKKRHEK-LDSLLKE 145
LGI +PQ +F G TV E N + E E KD +R+ LD+ + E
Sbjct: 1314 VLGI--IPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
S GQR+ L +AR+L+ ++LDE A VD + I IR+
Sbjct: 1371 AGEN---------FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE-E 1420
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
+ +LI H ++ I+ DR ++ AG V+ T + ++ N+
Sbjct: 1421 FKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEG 1464
Score = 61.7 bits (150), Expect = 2e-10
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 43/221 (19%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS-GSIKIDGNDITKMPMYRRARLGI 102
++L V G +V ++G G GKT+ M G + S S+ I G +
Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT--------------V 681
Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL---- 158
+Y+PQ + IF TV +NIL ++ ++ +R ++T +H L L
Sbjct: 682 AYVPQVSWIFNA-TVRDNILFGSP-FDPERYER---------AIDVTALQHDLDLLPGGD 730
Query: 159 ----------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASR 207
+SGGQ++R+ +AR++ S + D+P + +D V I+D
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRG 790
Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+L+T N L+ +DR ++H G + GT +E+ +N
Sbjct: 791 KTRVLVT--NQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 72.5 bits (178), Expect = 1e-13
Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 7/224 (3%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS---IKIDG 86
S T + + + + G L+G NG+GK+T ++ GL+ D I +DG
Sbjct: 12 SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG 71
Query: 87 NDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
+T ++ R ++GI + + F G TV +++ LE + + + + +L +
Sbjct: 72 ITLTAKTVWDIREKVGIVFQNPDNQ-FVGATVGDDVAFGLENRAVPRPEMIKIVRDVLAD 130
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ + LSGGQ++R+ IA L P I+LDE + +DP I LIR L
Sbjct: 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190
Query: 206 -SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ ++ H++ E + D+ ++ G +LA G+ EI
Sbjct: 191 KKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSK 233
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 72.4 bits (177), Expect = 1e-13
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP- 93
Y + +++ + I L+GP+G GK+TF + + G IKI+GN I +
Sbjct: 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKN 75
Query: 94 --------MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDSLLK 144
+ R ++G+ + Q + F +++ +NI +++ KDKKK E ++ LK
Sbjct: 76 IYSNNFDILELRRKIGMVF--QTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLK 132
Query: 145 EFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
+ + W V L LSGGQ++RL IAR+L P+ IL+DEP + +DP++ I
Sbjct: 133 KSAL--WNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190
Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
LI +L I+I HN+ + + DR G + + E+ N
Sbjct: 191 ELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 72.3 bits (177), Expect = 1e-13
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 6/231 (2%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
LT Y V + + + + G ++GPNG GK+T ++ L+ G + +DG I
Sbjct: 12 QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENI----LAVLEVYEKDKKKRHEKLDSLLKE 145
AR I L Q A+ +TV+E + ++ + +K+ E + ++
Sbjct: 72 QHYASKEVARR-IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQA 130
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL- 204
IT LSGGQR+R IA L + +LLDEP +D D+ L+ +L
Sbjct: 131 TGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190
Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
+G + H++++ + G ++A G +EI+ + + R+Y
Sbjct: 191 REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 72.0 bits (177), Expect = 1e-13
Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 18/219 (8%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMYRRA 98
V++ + G V ++G G+GK+T + GL+ SG++ I IT K R
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 99 RLGISYLPQEASIFRGLTVEENIL---AVLEVYEKDKKKRHEKLDSL--LKEFNITKWRH 153
++GI + E +F TVE++I V E+D K++ ++ L L E + +
Sbjct: 86 KVGIVFQFPEHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR--- 141
Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGI 211
+P LSGGQ RR+ IA L P ++LDEP AG+DP ++ + L +G+
Sbjct: 142 --SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTT 199
Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
++ H++ + D+ ++H G V GT +EI + D
Sbjct: 200 VLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 71.8 bits (177), Expect = 2e-13
Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 41/223 (18%)
Query: 17 ENRASKDSLLSACSLTKKYN--SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
+ + +++L+ LTKK S+ V G + GE++G++GPNG GKTTF ++ G+
Sbjct: 332 RDESERETLVEYPDLTKKLGDFSLEVEGG---EIYEGEVIGIVGPNGIGKTTFAKLLAGV 388
Query: 75 ICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK 134
+ D G + + L ISY PQ TVE+ + ++ +
Sbjct: 389 LKPDEGEVDPE--------------LKISYKPQYIKPDYDGTVEDLLRSITDDLG-SSYY 433
Query: 135 RHE-----KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
+ E +L+ LL + N+ LSGG+ +R+ IA L LLDEP A +
Sbjct: 434 KSEIIKPLQLERLL-DKNVKD--------LSGGELQRVAIAACLSRDADLYLLDEPSAHL 484
Query: 190 D---PVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRA 228
D +A++ IR +A R L+ DH+++ I + DR
Sbjct: 485 DVEQRLAVAKA---IRRIAEEREATALVVDHDIYMIDYISDRL 524
Score = 40.6 bits (96), Expect = 4e-04
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 59/212 (27%)
Query: 39 YVVKGVDLY----VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP- 93
Y V G LY K G++ G+LGPNG GKTT + L SG + + D + P
Sbjct: 83 YGVNGFKLYGLPIPKEGKVTGILGPNGIGKTT---AVKIL----SGELIPNLGDYEEEPS 135
Query: 94 ------MYR----------------RARLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131
+R + Y+ +F+G V E +L+ + D
Sbjct: 136 WDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKG-KVRE----LLK--KVD 188
Query: 132 KKKRHEKLDSLLKEFNITKW--RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
++ KLD +++ + R + LSGG+ +R+ IA +L+ + DEP + +
Sbjct: 189 ERG---KLDEVVERLGLENILDRDISE--LSGGELQRVAIAAALLRDADFYFFDEPTSYL 243
Query: 190 D-----PVAISDIHVLIRDLASRGIGILITDH 216
D VA LIR+LA G +L+ +H
Sbjct: 244 DIRQRLNVAR-----LIRELA-EGKYVLVVEH 269
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 71.7 bits (176), Expect = 2e-13
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
++ GV+L VK GE + L+G +G+GK+T ++ GL SG + + G + +M RA+
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 100 L---GISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155
L + ++ Q + L EN+ L L E ++ R+ LL++ + K L
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKA-LLEQLGLGKRLDHL 143
Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
LSGG+++R+ +AR+ P + DEP +D
Sbjct: 144 PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 71.9 bits (176), Expect = 2e-13
Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 43/234 (18%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+K + ++ G+++ + G G+GK++ M+ G + G IK G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ 488
Query: 100 LGISYLPQEASIFRGLTVEENIL-----------AVLEV--YEKDKKKRHEKLDSLLKEF 146
IS+ PQ + I G T+++NI+ +V++ E+D EK ++L E
Sbjct: 489 --ISFSPQTSWIMPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI--HVLIRDL 204
IT LSGGQR R+ +AR++ LLD PF +D V +I L + +
Sbjct: 546 GIT---------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM 596
Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ-DVRRLYLG 257
+++ IL+T H L D+ ++H G +GT E+ + D L LG
Sbjct: 597 SNK-TRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLG 647
Score = 64.9 bits (158), Expect = 2e-11
Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 26/206 (12%)
Query: 31 LTKKYNSV--YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG-- 86
LT KY V++ + V+ G+ VGLLG G+GK+T + L+ + G I+IDG
Sbjct: 1223 LTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVS 1281
Query: 87 -NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK------L 139
N +T + +R+A G+ +PQ+ IF G T +N L+ YE+ + K L
Sbjct: 1282 WNSVT-LQTWRKA-FGV--IPQKVFIFSG-TFRKN----LDPYEQWSDEEIWKVAEEVGL 1332
Query: 140 DSLLKEFNITKWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
S++++F K VL +LS G ++ + +ARS++S +LLDEP A +DPV +
Sbjct: 1333 KSVIEQFP-DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391
Query: 197 IHVLIRDLASRGIGILITDHNVHEIL 222
I ++ S IL ++H V +L
Sbjct: 1392 IRKTLKQSFSNCTVIL-SEHRVEALL 1416
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 71.5 bits (176), Expect = 2e-13
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
LS + K + V + + + G++ L+G NGAGK+T +++G D+GSI ID
Sbjct: 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64
Query: 86 GNDITKMPMYRRAR----LGISYLPQEASIFRGLTVEENI-LAVLE-----VYEKDKKKR 135
G ++ + G++ + QE + +TV EN+ L L V +
Sbjct: 65 GQEMR----FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE 120
Query: 136 -HEKLDSLLKEFN-ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
E+L+ L + + T ++ LS GQR+ +EIA++L I DEP + +
Sbjct: 121 AREQLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175
Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDR 227
I + +IR+L + G IL H + EI L D
Sbjct: 176 IEQLFRVIRELRAEGRVILYVSHRMEEIFALCDA 209
Score = 67.2 bits (165), Expect = 4e-12
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 29/217 (13%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-KMPMYRRA-RLG 101
+ V+ GEIVGL G GAG++ ++ G +G + +DG I + P R A R G
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP--RDAIRAG 329
Query: 102 ISYLPQ---EASIFRGLTVEENI------------LAVLEVYEKDKKKRHEKLDSLLKEF 146
I P+ I +V +NI + +E + R ++
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRF------IRSL 383
Query: 147 NI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
NI T R L LSGG +++ + R L ILLDEP G+D A +I+ +I +LA
Sbjct: 384 NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA 443
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAG---GVLAH 239
++G+ +L ++ E+L + DR ++ G G LA
Sbjct: 444 AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 70.8 bits (174), Expect = 3e-13
Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 34/223 (15%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98
++ V L ++PGE V ++GP+G+GK+T ++ G +SGS+ DG D+ + + R
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527
Query: 99 RLGI---SYLPQEASIFR------GLTVEENILAVLEV-YEKDKKKRHEKLDSLLKEFNI 148
+LG+ + SIF LT++E A +D + + +++ E
Sbjct: 528 QLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG 587
Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV---LIRDLA 205
T LSGGQR+RL IAR+LV P +L DE + +D + V L R
Sbjct: 588 T---------LSGGQRQRLLIARALVRKPRILLFDEATSALD--NRTQAIVSESLERLKV 636
Query: 206 SRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEII 246
+R I+I H + T+ DR Y++ AG V+ GT E++
Sbjct: 637 TR---IVIA----HRLSTIRNADRIYVLDAGRVVQQGTYDELM 672
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 70.7 bits (173), Expect = 3e-13
Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 8/183 (4%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-----PMY 95
++GV +++PGE+ L G +GAGK+T ++ G+ +G I G+DIT++ P
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155
RR I + Q+ + TV +N+ L + ++ + L + +
Sbjct: 78 RRQ---IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF 134
Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215
LSGG+++R+ IAR++V+ P+ +L DEP +D I L + G+ +L+
Sbjct: 135 PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMAT 194
Query: 216 HNV 218
H++
Sbjct: 195 HDI 197
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 70.6 bits (173), Expect = 4e-13
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 10/213 (4%)
Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEA 109
G++ GL+G NG+GK+T M+ G I +D + AR ++YLPQ+
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-KVAYLPQQL 94
Query: 110 SIFRGLTVEENILAVLEVYE------KDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQ 163
G+TV E L + Y + EK++ + + H L LSGG+
Sbjct: 95 PAAEGMTVRE--LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGE 152
Query: 164 RRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEIL 222
R+R IA + +LLDEP + +D D+ L+ L+ RG+ ++ H+++
Sbjct: 153 RQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212
Query: 223 TLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
D + G ++A GT E++ + + ++Y
Sbjct: 213 RYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 70.5 bits (173), Expect = 4e-13
Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 27/222 (12%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
++ + L +K ++G +G+GK+T ++ G A SG I ++G + + + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 100 LGISYLPQEASIFRGLTVE------------ENILAVLEVYE--KDKKKRHEKLDSLLKE 145
I+YLPQE IF G +E + I A E+ E D + + L E
Sbjct: 549 F-INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ +SGGQ++R+ +AR+L++ ++LDE + +D + I + +L
Sbjct: 608 EGSS---------ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+ I I + H + + D+ ++ G ++ G+ E++D
Sbjct: 659 DKTI-IFVA-HRL-SVAKQSDKIIVLDHGKIIEQGSHDELLD 697
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 70.7 bits (173), Expect = 4e-13
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+L L Y+ +++ + ++ G ++ L G NGAGKTT ++ GL+ + G I
Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60
Query: 85 DGNDITK-MPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
+ I K + Y++ + ++ + I LT+ EN L Y+ + L
Sbjct: 61 ERQSIKKDLCTYQKQ---LCFVGHRSGINPYLTLRENCL-----YDIHFSPGAVGITELC 112
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
+ F++ LLS GQ+R++ + R +S LLDEP +D +++ I I++
Sbjct: 113 RLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE 172
Query: 204 LASRGIGILITDH 216
++G +L+T H
Sbjct: 173 HRAKGGAVLLTSH 185
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 70.5 bits (173), Expect = 4e-13
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 18/238 (7%)
Query: 24 SLLSACSLTKKYNSV---------YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
+LL+ L+ Y V+ V L +K GE V LLG +G GK+T ++ GL
Sbjct: 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61
Query: 75 ICADSGSIKIDGNDITKMPMYRRA--RLGISYLPQEA--SIFRGLTVEENILAVLE-VYE 129
G++ G + K+ +R R I + Q++ ++ TV E I L +
Sbjct: 62 ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS 121
Query: 130 KDKKKRHEKLDSLLKEFNITKWRHV--LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187
DK +R + +L+ ++ + P LSGGQ +R+ +AR+L P ++LDE +
Sbjct: 122 LDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180
Query: 188 GVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
+D V + + L++ L + G L H++ + R ++ G ++ V +
Sbjct: 181 NLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 70.5 bits (173), Expect = 4e-13
Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 16/217 (7%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+ + L ++PGE V L+G +G+GK+T ++ DSG I +DG+D+ + R
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL-ASLR 405
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL-DSLLKEF--NITKWRH--- 153
++ + Q+ +F T+ NI A + D+ + L + ++F +
Sbjct: 406 RQVALVSQDVVLFND-TIANNI-AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463
Query: 154 -VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
LLSGGQR+RL IAR+L+ ++LDE + +D + + + L ++
Sbjct: 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523
Query: 213 ITDHNVHEILTL--IDRAYIIHAGGVLAHGTVQEIID 247
I H + T+ DR ++ G ++ GT E++
Sbjct: 524 IA----HRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 70.5 bits (173), Expect = 5e-13
Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 18/221 (8%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP--MYRRA 98
V GV L + GE +G++G +G GK+TF + GL+ A G + G D+ M +R
Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAV 96
Query: 99 RLGISYLPQE--ASIFRGLTVEENILAVLEVY--EKDKKKRHEKLDSLLKEFN-----IT 149
R I + Q+ AS+ +T+ E I L Y + +++ +++ +++ + I
Sbjct: 97 RSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN 156
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRDL-ASR 207
++ H SGGQ +R+ IAR+L+ P I+ DEP + +D V+I V L++ L
Sbjct: 157 RYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALD-VSIQAQVVNLLQQLQREM 211
Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
G+ ++ H++ + + DR +++ G + GT E+ N
Sbjct: 212 GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 70.3 bits (173), Expect = 5e-13
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 50/217 (23%)
Query: 53 IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRRARLGISYLP 106
I + G +GAGKT+ ++GL G I ++G D K +P +R I Y+
Sbjct: 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR---RIGYVF 82
Query: 107 QEASIFRGLTVEENILAVLEVYEKDKKKRHE--------KLDSLLKEFNITKWRHVLAPL 158
Q+A +F V N+ Y K + ++ LL + +
Sbjct: 83 QDARLFPHYKVRGNLR-----YGMAKSMVAQFDKIVALLGIEPLLDRYPGS--------- 128
Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD---------LASR-G 208
LSGG+++R+ I R+L++ P +L+DEP A +D L R LA
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD---------LPRKRELLPYLERLAREIN 179
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
I IL H++ EIL L DR ++ G V A G ++E+
Sbjct: 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 69.6 bits (171), Expect = 8e-13
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 31/161 (19%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRRA 98
V+ V KPG+ V ++GP GAGK+T ++ + SG I IDG DI + RR
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410
Query: 99 RLGISYLPQEASIF-RGLTVEENIL-----AVL-EVYEKDKK--------KRHEKLDSLL 143
I+ + Q+A +F R ++E+NI A E+ ++ ++ + D+++
Sbjct: 411 ---IAVVFQDAGLFNR--SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVV 465
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDE 184
E R LSGG+R+RL IAR+L+ P ++LDE
Sbjct: 466 GE------R---GRQLSGGERQRLAIARALLKDPPILILDE 497
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 69.4 bits (170), Expect = 8e-13
Identities = 53/225 (23%), Positives = 109/225 (48%), Gaps = 9/225 (4%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI---TKMPMYR- 96
+ V+ + G+ ++G G+GK+T + L+ +G++ +D I TK R
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 97 -RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155
R R+G+ + E+ +F TVE I+ + ++ + + LL + ++
Sbjct: 83 VRKRIGMVFQFPESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQ 141
Query: 156 APL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILI 213
+P +SGGQ R++ I L P I+LDEP AG+DP + + L++ L I++
Sbjct: 142 SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201
Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII-DNQDVRRLYLG 257
H+++E+ D ++ G +++ + +E+ D + + ++G
Sbjct: 202 VSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIG 246
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 69.2 bits (169), Expect = 1e-12
Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 23/243 (9%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL-----ICADSGSIKIDGNDI 89
Y + ++L + +I L+GP+G GK+TF + + G + +DG +I
Sbjct: 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73
Query: 90 --TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145
+ + R R+G+ + Q+ + F +++ +N+ ++ KDKK+ + ++ LK+
Sbjct: 74 YDKDVDVVELRKRVGMVF--QKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK 130
Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
+ W V L LSGGQ++RL IAR++ P IL+DEP + +DP++ I
Sbjct: 131 AAL--WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257
L+ +L + I+I HN+ + + D G ++ ++I + Y+
Sbjct: 189 LMVELK-KEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETEDYIS 247
Query: 258 DRF 260
RF
Sbjct: 248 GRF 250
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 69.1 bits (169), Expect = 1e-12
Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 23/262 (8%)
Query: 16 QENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI 75
+ A K + +L Y + +K ++L + E+ ++GP+G GK+T+ + ++
Sbjct: 15 KIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74
Query: 76 -----CADSGSIKIDGNDI--TKMPMYR-RARLGISYL---PQEASIFRGLTVEENILAV 124
+G I +I + R +G+ + P SI+ +T I +
Sbjct: 75 ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGI 134
Query: 125 LEVYEKDKKKRHEKLDSLLKEFNI---TKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYI 180
KDKK E ++ L+ I K R H A LSGGQ++RL IAR L P I
Sbjct: 135 -----KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVI 189
Query: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
L+DEP + +DP++ + L+++L I+I HN+ + + D+ G V +
Sbjct: 190 LMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248
Query: 241 TVQEIIDNQDVRRL--YLGDRF 260
+I N +R Y+ RF
Sbjct: 249 DTDKIFSNPSDKRTEDYITGRF 270
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 69.0 bits (169), Expect = 1e-12
Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRA 98
V+ ++L +KPGE +G++GP+G+GK+T ++ L G + +DG D+ P + R
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531
Query: 99 RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDK-KKRHEKLDSLLKEFNITKW 151
++G+ + QE +F ++ +NI V K H+ + L + +N
Sbjct: 532 QMGV--VLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL--ASRGI 209
LSGGQR+R+ IAR+LV P ++ DE + +D S+ +++R++ RG
Sbjct: 589 EK--GANLSGGQRQRIAIARALVGNPRILIFDEATSALD--YESE-ALIMRNMREICRGR 643
Query: 210 GILITDH------NVHEILTLIDRAYIIHAGG 235
++I H I+ L ++ I +G
Sbjct: 644 TVIIIAHRLSTVRACDRIIVL-EKGQIAESGR 674
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 68.7 bits (168), Expect = 1e-12
Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 33/258 (12%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD------ 78
+L+A L +++ + L ++PG + LLG NGAGK+T + G +
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 79 --SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK--- 133
+G + ++G + + R ARL + LPQ A + E +L L Y ++
Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLARLR-AVLPQAAQPAFAFSAREIVL--LGRYPHARRAGA 117
Query: 134 -KRHEK--LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSF---------PSYIL 181
+ L T LSGG+ R++ AR L P Y+L
Sbjct: 118 LTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177
Query: 182 LDEPFAGVDPVAISDIHVL---IRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVL 237
LDEP A +D ++ H L +R LA +G+L H+ + DR ++ G ++
Sbjct: 178 LDEPTAALD---LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234
Query: 238 AHGTVQEIIDNQDVRRLY 255
AHG +++ + R Y
Sbjct: 235 AHGAPADVLTPAHIARCY 252
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 68.0 bits (167), Expect = 2e-12
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 29/249 (11%)
Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79
LLS LTK Y + V + PGE++G++G +G+GKTT ++ + D+
Sbjct: 1 MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA 60
Query: 80 GSIKIDGN-----DITKMPMYRRARLGIS---YLPQEA------SIFRGLTVEENILAVL 125
G + D+ + R RL + ++ Q + G + E ++AV
Sbjct: 61 GEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG 120
Query: 126 EVYEKDKKKRH-----EKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSY 179
RH L+ I R P SGG ++RL+IAR+LV+ P
Sbjct: 121 A--------RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRL 172
Query: 180 ILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
+ +DEP G+D + + L+R L G+ ++I H++ L R ++ G V+
Sbjct: 173 VFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
Query: 239 HGTVQEIID 247
G +++D
Sbjct: 233 SGLTDQVLD 241
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 67.8 bits (166), Expect = 3e-12
Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 13/218 (5%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD----SGSIKIDGNDITKMPMYR 96
V+ ++L +K GE++ L+G +G+GK+ + GL+ SG I +DG + +P+
Sbjct: 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSI 59
Query: 97 RARLGISYLPQEA-SIFRGL-TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154
R R I+ + Q + F L T+ + + L K K+ + L+ + V
Sbjct: 60 RGRH-IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 155 L---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RGIG 210
L LSGG +R+ IA +L+ P +++ DEP +D V + + L+R+L G G
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG 178
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
IL+ H++ + + D ++ G ++ GTV+EI N
Sbjct: 179 ILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 67.4 bits (165), Expect = 3e-12
Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 24/193 (12%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP--MYRR 97
++ + ++ GE + GP+G GK+T ++ LI SG++ +G DI+ + +YR+
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKK------RHEKLDSLLKEFNIT 149
+SY Q ++F G TV +N++ ++ + D R D++L + NI
Sbjct: 82 Q---VSYCAQTPTLF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTK-NIA 136
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RG 208
+ LSGG+++R+ + R+L P +LLDE + +D +++ +I +
Sbjct: 137 E--------LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN 188
Query: 209 IGILITDHNVHEI 221
I +L H+ EI
Sbjct: 189 IAVLWVTHDKDEI 201
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 67.2 bits (165), Expect = 4e-12
Identities = 53/226 (23%), Positives = 106/226 (46%), Gaps = 40/226 (17%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRRARLG 101
++ + G+ + L+GP+GAGKT+ + G + GS+KI+G ++ ++ +R+
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH--- 424
Query: 102 ISYLPQEASIFRGLTVEENIL------------AVLE-VYEKDKKKRHEK-LDSLLKEFN 147
+S++ Q + G T+ +N+L LE + + + LD+ + +
Sbjct: 425 LSWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483
Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL--IRDLA 205
LS GQ +RL +AR+L+ +LLDEP A +D A S+ V+ + +
Sbjct: 484 AG---------LSVGQAQRLALARALLQPCQLLLLDEPTASLD--AHSEQLVMQALNAAS 532
Query: 206 SRGIGILITDHNVHEI--LTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
R +++T H++ L D+ +++ G ++ G E+
Sbjct: 533 RRQTTLMVT----HQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG 574
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 66.3 bits (161), Expect = 7e-12
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 25/232 (10%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKIDGNDITKMP 93
+V+ ++L +K ++ +GP+G GK+TF + L + G I G +
Sbjct: 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155
Query: 94 MYR---RARLGISY---LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN 147
+ R R+G+ + P E SIF + + D+K + ++ LK
Sbjct: 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGI-----NDRKILEKIVEKSLKSAA 210
Query: 148 ITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
+ W V L LSGGQ++RL IAR++ P +L+DEP + +DP+A + I LI
Sbjct: 211 L--WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
+L + I+I H++ + + D + G + G + I + +R
Sbjct: 269 LELKKK-YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKR 319
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 66.4 bits (163), Expect = 7e-12
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 26/172 (15%)
Query: 31 LTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+ K Y V+KG+DL V GE + L+GP+G GK+T M+ GL SG I I G +
Sbjct: 9 VRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV 68
Query: 90 TKM-PMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSLLKE 145
++ P R I+ + Q +++ ++V EN+ L + + + + ++R + +L+
Sbjct: 69 NELEPADR----DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE- 123
Query: 146 FNITKWRHVLAPL-------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
L PL LSGGQR+R+ + R++V P+ L DEP + +D
Sbjct: 124 ---------LEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 66.0 bits (161), Expect = 9e-12
Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 31/223 (13%)
Query: 17 ENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTG 73
+++L +L Y S VK V L + +I +GP+G GK+T F +
Sbjct: 2 STLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61
Query: 74 LI--CADSGSIKIDGNDITKM---PMYRRARLGISYL---PQEASIFRGLTVEENIL--A 123
LI G + G ++ P+ R R+G+ + P SI+ +NI A
Sbjct: 62 LIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIY------DNIAYGA 115
Query: 124 VLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFP 177
+ Y+ D E ++ L++ + W V L LSGGQ++RL IAR++ P
Sbjct: 116 RINGYKGDMD---ELVERSLRQAAL--WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQP 170
Query: 178 SYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220
IL+DEP + +DP++ I L+ +L + I+I HN+ +
Sbjct: 171 EVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQ 212
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 65.5 bits (161), Expect = 1e-11
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 38/168 (22%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
L+K + ++ + + PG IVG++GPNGAGK+T F M+TG DSG+I
Sbjct: 330 LSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-------- 381
Query: 91 KMPMYRRARLG----ISYLPQE-ASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSL 142
++G ++Y+ Q ++ TV E I L +++V ++ R +
Sbjct: 382 --------KIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR-----AY 428
Query: 143 LKEFNIT-----KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEP 185
+ FN K +LSGG+R RL +A++L + +LLDEP
Sbjct: 429 VGRFNFKGGDQQK----KVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472
Score = 59.4 bits (145), Expect = 9e-10
Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 67/191 (35%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
++K + L PG +G+LG NGAGK+T +M G+ D + +G + P +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV---DK---EFEG-EARPAPGIK--- 71
Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKL-----------DSLLKEF- 146
+ YLPQE + TV EN+ V EV K R ++ D+L E
Sbjct: 72 --VGYLPQEPQLDPEKTVRENVEEGVAEV--KAALDRFNEIYAAYAEPDADFDALAAEQG 127
Query: 147 --------------------------------NITKWRHVLAPLLSGGQRRRLEIARSLV 174
+TK LSGG+RRR+ + R L+
Sbjct: 128 ELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTK--------LSGGERRRVALCRLLL 179
Query: 175 SFPSYILLDEP 185
P +LLDEP
Sbjct: 180 EKPDMLLLDEP 190
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 65.2 bits (159), Expect = 2e-11
Identities = 59/245 (24%), Positives = 121/245 (49%), Gaps = 29/245 (11%)
Query: 23 DSLLSACSLTKKY---------NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG 73
++LL +L+K + +V VK + ++ G+ + ++G NG+GK+T M+ G
Sbjct: 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61
Query: 74 LICADSGSIKIDGNDITKMPM-YRRARLGISYLPQEASIFRGLTVEENILAVLEV----- 127
+I SG + ID + + YR R I + Q+ S L + I +L+
Sbjct: 62 MIEPTSGELLIDDHPLHFGDYSYRSQR--IRMIFQDPS--TSLNPRQRISQILDFPLRLN 117
Query: 128 YEKDKKKRHEKLDSLLKEFNI-----TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILL 182
+ + ++R +++ L++ + + + H+LAP GQ++RL +AR+L+ P I+
Sbjct: 118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAP----GQKQRLGLARALILRPKVIIA 173
Query: 183 DEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
DE A +D S + L+ +L + GI + ++ + + D+ ++H G V+ G+
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
Query: 242 VQEII 246
+++
Sbjct: 234 TADVL 238
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 64.7 bits (157), Expect = 2e-11
Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 35/250 (14%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT------------GLICADSGSI 82
Y+ V+K +++ +I ++GP+G GK+T + G + D+ +I
Sbjct: 14 YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73
Query: 83 KIDGNDITKMPMYRRARLGISYL---PQEASIFRGLTVEENILAVL------EVYEKDKK 133
D+ + R R+G+ + P SIF + +L EV EK +
Sbjct: 74 YSPNLDVVNL----RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLR 129
Query: 134 KRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
+ +L E + LA LSGGQ++RL IAR L P IL+DEP + +DPV+
Sbjct: 130 QA-----ALWDEVKDNLHKSGLA--LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182
Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
I L+++L + I I HN+ + D + G ++ +G EI +R
Sbjct: 183 TMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKR 241
Query: 254 L--YLGDRFA 261
Y+ RF
Sbjct: 242 TEDYITGRFG 251
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 65.0 bits (158), Expect = 2e-11
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 32/258 (12%)
Query: 29 CSLTKK-YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY---MMTGLICAD--SGSI 82
C L K Y + V+ + ++ EI G +GP+G GK+T M L+ G +
Sbjct: 11 CKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV 70
Query: 83 KIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL 139
G D+ P+ R +G+ + Q+ + F +++ +N+ L + + K +++
Sbjct: 71 HFLGQDVYGKGVDPVVVRRYIGMVF--QQPNPF-SMSIFDNVAFGLRL-NRYKGDLGDRV 126
Query: 140 DSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
L+ + W V L LSGGQ++RL IAR++ + P +LLDEP + +DP+A
Sbjct: 127 KHALQGAAL--WDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184
Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYI----IHAGGVLAH----GTVQEI 245
+ L+ +L + I + HN+ + + + D I G + G +I
Sbjct: 185 TRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243
Query: 246 IDN--QDVRRLYLGDRFA 261
N + + Y+ +F+
Sbjct: 244 FQNPREQLTSDYISGKFS 261
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 63.8 bits (155), Expect = 4e-11
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95
NS V V K G+ V ++GP GAGKTT ++ + G I IDG DI +
Sbjct: 346 NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR- 404
Query: 96 RRARLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKR-HEKLDSLLKEFNI 148
R I+ + Q+A +F ++ ENI EVYE K H+ + ++
Sbjct: 405 ESLRKSIATVFQDAGLF-NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDT 463
Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
LSGG+R+RL IAR+++ ++LDE + +D
Sbjct: 464 LVGER--GNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 63.2 bits (154), Expect = 7e-11
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 36/198 (18%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM-----TGLICAD---SGSIKIDGNDITK 91
++ VD +VKPG + L+G +GAGKTT ++ TG+I +D +
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS---- 833
Query: 92 MPMYRRARLGISYLPQEASIFRGLTVEENIL--------AVLEVYEKDKKKRHEKLDSLL 143
++R+ I Y+ Q+ TV E++ + EK E ++ ++
Sbjct: 834 ---FQRS---IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKM-----EYVEEVI 882
Query: 144 KEFNITKWRHVLAPL----LSGGQRRRLEIARSLVSFPSYIL-LDEPFAGVDPVAISDIH 198
K + + + + L+ QR+RL I LV+ P +L LDEP +G+D I
Sbjct: 883 KLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942
Query: 199 VLIRDLASRGIGILITDH 216
L+R LA G IL T H
Sbjct: 943 KLMRKLADHGQAILCTIH 960
Score = 46.6 bits (111), Expect = 6e-06
Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 29/180 (16%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI----CADSGSIKIDGND 88
+ + ++K +D +KPGE+ +LG G+G +T + G I DG
Sbjct: 69 RDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG-- 126
Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148
IT + + R + Y + F LTV E + K + R + + +E
Sbjct: 127 ITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARC--KTPQNRPDGVS---REEYA 181
Query: 149 TKWRHVLAPLL------------------SGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
V SGG+R+R+ IA + + D G+D
Sbjct: 182 KHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 61.4 bits (149), Expect = 2e-10
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 17/217 (7%)
Query: 38 VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR- 96
V+ V+ V + PGE + L+G +G+GK+T + L+ + G I +G I + +
Sbjct: 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKL 396
Query: 97 -RARLGISYLPQE--ASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNIT--- 149
R I ++ Q+ AS+ TV ++I+ L V+ K ++ LL+ +
Sbjct: 397 QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH 456
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208
WR+ SGGQR+R+ IAR+L P I+ DE + +D I L+ DL G
Sbjct: 457 AWRYPHE--FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
I L H+ + +++R I H V+ G + EI
Sbjct: 515 IAYLFISHD----MAVVER--ISHRVAVMYLGQIVEI 545
Score = 55.6 bits (134), Expect = 1e-08
Identities = 53/232 (22%), Positives = 107/232 (46%), Gaps = 34/232 (14%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
V+ + ++ GE + ++G +G+GK+ + L+ G ++ D KM + RR+R
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCD-----KMLLRRRSRQ 86
Query: 101 GISYLPQEASIFRGL--------------------TVEENILAVLEVYE---KDKKKRHE 137
I Q A+ R + TV E I + +++ +++
Sbjct: 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEA 146
Query: 138 KLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
K +L + I + + +L+ LSGG R+R+ IA +L P+ ++ DEP +D
Sbjct: 147 K--RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ 204
Query: 195 SDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ I LI+ L +G++ H++ + + DR +++ G + G+V++I
Sbjct: 205 AQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 57.0 bits (138), Expect = 5e-09
Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 22/208 (10%)
Query: 42 KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL- 100
+ ++ + G+ V L+G +G+GK+T ++T D G I +DG+D+ Y A L
Sbjct: 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD---YTLASLR 416
Query: 101 -GISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL--- 155
++ + Q +F T+ NI A E Y +++ + ++ + +F I K + L
Sbjct: 417 NQVALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAM-DF-INKMDNGLDTV 473
Query: 156 ----APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
LLSGGQR+R+ IAR+L+ ++LDE + +D + I + +L +
Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533
Query: 212 LI-----TDHNVHEILTLIDRAYIIHAG 234
+I T EIL +++ I+ G
Sbjct: 534 VIAHRLSTIEKADEIL-VVEDGEIVERG 560
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 55.6 bits (134), Expect = 1e-08
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 23/215 (10%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFF--YMMTGLICADSGSIKIDGNDITKMPMYRR 97
V++GV + P E VG++G G+GK+T +M +C G I+++G +I + R
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG--GEIRVNGREIGAYGL-RE 1381
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
R S +PQ+ +F G TV +N+ LE + E + L+E ++ + +
Sbjct: 1382 LRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVG--LRERVASESEGIDSR 1438
Query: 158 LLSG------GQRRRLEIARSLVSFPS-YILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
+L G GQR+ + +AR+L+ S +IL+DE A +DP I + S
Sbjct: 1439 VLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTV 1498
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
I I H +H T+ II V+ HG V E+
Sbjct: 1499 ITIA-HRLH---TVAQYDKII----VMDHGAVAEM 1525
Score = 41.3 bits (97), Expect = 3e-04
Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 58/220 (26%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103
V + V G++ +LG G+GK+T + G + A I+
Sbjct: 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------------WAERSIA 724
Query: 104 YLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL----- 158
Y+PQ+A I TV NIL E E L +++ LA L
Sbjct: 725 YVPQQAWIMNA-TVRGNILFFDE----------EDAARLADAVRVSQLEADLAQLGGGLE 773
Query: 159 ---------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV---LIRDL-- 204
LSGGQ+ R+ +AR++ + LLD DP++ D HV ++ +
Sbjct: 774 TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD------DPLSALDAHVGERVVEECFL 827
Query: 205 -ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQ 243
A G ++ H VH ++ D Y++ L G V+
Sbjct: 828 GALAGKTRVLATHQVH-VVPRAD--YVV----ALGDGRVE 860
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 55.7 bits (134), Expect = 1e-08
Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 14/212 (6%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
Y + + V GEIVG++G NG+GK+T ++ G+ + G++ I G+ A
Sbjct: 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS---------AA 88
Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158
+ IS + + LT ENI + K+K E + +++ +I K+ +
Sbjct: 89 LIAIS-----SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKT 143
Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218
S G + RL A S+ P +++DE + D + + +G I H++
Sbjct: 144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203
Query: 219 HEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
++ + +A +H G V +G ++E++D+ D
Sbjct: 204 SQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 55.6 bits (134), Expect = 1e-08
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 29/206 (14%)
Query: 43 GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGI 102
G+DL + + ++GPNG GK+T +++G + SG++ +R A++ +
Sbjct: 531 GIDLDSR----IAMVGPNGIGKSTILKLISGELQPSSGTV------------FRSAKVRM 574
Query: 103 SYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL--L 159
+ Q GL + N +L ++ + + +KL + L F +T L P+ L
Sbjct: 575 AVFSQHH--VDGLDLSSNPLLYMMRCFPGVPE---QKLRAHLGSFGVTG-NLALQPMYTL 628
Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
SGGQ+ R+ A+ P +LLDEP +D + + LI+ L G+L+ H+ H
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLD---LDAVEALIQGLVLFQGGVLMVSHDEH 685
Query: 220 EILTLIDRAYIIHAGGVLA-HGTVQE 244
I +D +++ G V HGT +
Sbjct: 686 LISGSVDELWVVSEGKVTPFHGTFHD 711
Score = 32.5 bits (74), Expect = 0.12
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 160 SGGQRRRLEIARSLVSFPSYILLDEP 185
SGG R R+ +AR+L P +LLDEP
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEP 371
Score = 27.5 bits (61), Expect = 3.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 51 GEIVGLLGPNGAGKTTFFYMM 71
G GL+G NG GKTTF M
Sbjct: 203 GRHYGLVGRNGTGKTTFLRYM 223
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 55.7 bits (135), Expect = 1e-08
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
V ++L +K GE++ L+G NG+GK+T ++TGL SG I +DG +T +L
Sbjct: 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398
Query: 101 GISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLLKEFNITKWRHVLAPL 158
S + + +F L E A + EK ++ K KL+ L++ I+ +
Sbjct: 399 -FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE--LEDGRISNLK------ 449
Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
LS GQ++RL + +L +LLDE A DP
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDP 482
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 55.1 bits (133), Expect = 2e-08
Identities = 60/247 (24%), Positives = 122/247 (49%), Gaps = 19/247 (7%)
Query: 17 ENRASKDSLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKT-TFFYMM 71
+ D+LL L +++ V V ++ ++ GE +G++G +G+GK+ T F +M
Sbjct: 4 LAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALM 63
Query: 72 TGLICAD---SGSIKIDGNDITKMPMYRRARL---GISYLPQE--ASIFRGLTVEENILA 123
GL+ A+ GS +G +I +P +L IS + Q+ S+ + V E ++
Sbjct: 64 -GLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME 122
Query: 124 VLEVYEK-DKKKRHEKLDSLLKEFNI--TKWRHVLAPL-LSGGQRRRLEIARSLVSFPSY 179
VL +++ K + E+ +L + + R + P SGG R+R+ IA +L+ P
Sbjct: 123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL 182
Query: 180 ILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
++ DEP +D + I L+ +L I++ H++ + + D+ +++AG +
Sbjct: 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242
Query: 239 HGTVQEI 245
+G +++
Sbjct: 243 YGNARDV 249
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 54.1 bits (130), Expect = 3e-08
Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 55/235 (23%)
Query: 6 NYLGIEMP-EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGK 64
NY ++MP E +E ++D L +++ V +PG + L+G +GAGK
Sbjct: 874 NYF-VDMPAEMKEQGVTEDRL-------------QLLREVTGAFRPGVLTALMGVSGAGK 919
Query: 65 TTFFYMMTGLICAD--SGSIKIDG-----------------NDITKMPMYRRARLGIS-- 103
TT ++ G G I+I G NDI + R L S
Sbjct: 920 TTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979
Query: 104 -YLPQEASIFRGLT-VEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSG 161
LP+E S + V+E V+E+ E D K D+++ +T LS
Sbjct: 980 LRLPKEVSKEEKMMFVDE----VMELVELDNLK-----DAIVGLPGVTG--------LST 1022
Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216
QR+RL IA LV+ PS I +DEP +G+D A + + +R+ G ++ T H
Sbjct: 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
Score = 31.0 bits (70), Expect = 0.29
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+L KK + ++K +KP + LLGP +GKTT + G + S+K+ G +I
Sbjct: 171 NLAKK-TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL---DPSLKVSG-EI 225
Query: 90 TKMPMYRRARLGISYLPQEASIF 112
T Y RL ++P++ S +
Sbjct: 226 T----YNGYRLN-EFVPRKTSAY 243
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 53.6 bits (129), Expect = 5e-08
Identities = 52/214 (24%), Positives = 104/214 (48%), Gaps = 18/214 (8%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLI------CADSGSIKIDGNDITKMPMYRRARL- 100
VK GE+VG++G +G+GK+ + GLI A+ ++ +G D+ ++ R L
Sbjct: 30 VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEK--LEFNGQDLQRISEKERRNLV 87
Query: 101 --GISYLPQEA--SIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKEFNI---TKWR 152
++ + Q+ S+ TV I+ ++V++ +KK R ++ LL + I
Sbjct: 88 GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL 147
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211
V LSGG +R+ IA ++ P ++ DEP +D + I L+ +L + + +
Sbjct: 148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMAL 207
Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
++ H++ + + +++AG V+ G +I
Sbjct: 208 VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 53.4 bits (129), Expect = 6e-08
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 18/148 (12%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
VK V+ G+ + L+GPNG GKTT +M G + ADSG I TK L
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG----TK--------L 382
Query: 101 GISYLPQ-EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL- 158
++Y Q A + TV +N+ + + + RH + L++F R + P+
Sbjct: 383 EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRH--VLGYLQDFLFHPKR-AMTPVK 439
Query: 159 -LSGGQRRRLEIARSLVSFPSYILLDEP 185
LSGG+R RL +AR + + ++LDEP
Sbjct: 440 ALSGGERNRLLLARLFLKPSNLLILDEP 467
Score = 50.7 bits (122), Expect = 3e-07
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 50/176 (28%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
+L+++ E V L+G NGAGK+T ++ G + D G I + + L ++
Sbjct: 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD------------LIVAR 70
Query: 105 LPQ------EASIF----RGLTVEENILAVLEVY-------EKDKKKRH----EKLDSLL 143
L Q E +++ G+ E L+ Y E D +++ KL L
Sbjct: 71 LQQDPPRNVEGTVYDFVAEGI---EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 144 KEFNI----TKWRHVLAPL----------LSGGQRRRLEIARSLVSFPSYILLDEP 185
N+ + VLA L LSGG R+ + R+LVS P +LLDEP
Sbjct: 128 DHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 53.1 bits (128), Expect = 7e-08
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGN- 87
YN ++ + V PGE ++GPNGAGK+T LI D S + + G
Sbjct: 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL----SLITGDHPQGYSNDLTLFGRR 324
Query: 88 --------DITKMPMYRRARLGISYLPQEASIFRGLTVEENILA----VLEVYEKDKKKR 135
DI K Y + L + Y S +V IL+ + +Y+ ++
Sbjct: 325 RGSGETIWDIKKHIGYVSSSLHLDY---RVST----SVRNVILSGFFDSIGIYQAVSDRQ 377
Query: 136 HEKLDSLLKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
+ L I K R AP LS GQ+R I R+LV P+ ++LDEP G+DP
Sbjct: 378 QKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDP-- 434
Query: 194 ISDIHVLIRDLASRGIGILITD 215
L R L R + +LI++
Sbjct: 435 ------LNRQLVRRFVDVLISE 450
Score = 45.8 bits (109), Expect = 1e-05
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218
LS G+ R+ + ++L+S P ++LDEPF G+D + + L+ L GI +++ +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195
Query: 219 HEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
EI + A GVLA T+ E + +++
Sbjct: 196 DEIPDFVQFA------GVLADCTLAETGEREEI 222
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 52.3 bits (125), Expect = 1e-07
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 35/213 (16%)
Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM 94
Y + V L + +I+ +GP+G GK+T L C + + I G + +
Sbjct: 30 YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTL------LRCFNRMNDLIPGAKVEGRLL 83
Query: 95 YR------------RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
YR + R + + Q + F ++ ENI + LD L
Sbjct: 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENI-----AFAPRANGYKGNLDEL 137
Query: 143 LKEFNITK---WRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
+ E ++ + W V L LSGGQ++RL IAR++ P +L+DEP + +DP++
Sbjct: 138 V-EDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIS 196
Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLID 226
+ L +L + I++T HN+ + + D
Sbjct: 197 TRQVEELCLELKEQYTIIMVT-HNMQQASRVAD 228
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 52.3 bits (125), Expect = 1e-07
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 18/212 (8%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
V++ +++ + GE VG++G GAGK++ + + + G I IDG +I K+ ++
Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH-DL 1358
Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT---KWRHVL 155
R I+ +PQ+ +F G ++ N+ + +++ E + LK F K H
Sbjct: 1359 RFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALEL--AHLKTFVSALPDKLDHEC 1415
Query: 156 A---PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
A LS GQR+ + +AR+L+ ++LDE A VD + I IR +
Sbjct: 1416 AEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLT 1475
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
I H + T++D +I VL G V E
Sbjct: 1476 IA----HRLNTIMDYTRVI----VLDKGEVAE 1499
Score = 50.3 bits (120), Expect = 5e-07
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 43 GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGI 102
G+ + G +V ++G G GK++ + + G + + G+ +
Sbjct: 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--------------V 701
Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW--RHVLAPL-- 158
+Y+PQ+A I + ++ ENIL + EK ++ E +LL + I R +
Sbjct: 702 AYVPQQAWI-QNDSLRENILFGKALNEKYYQQVLEAC-ALLPDLEILPSGDRTEIGEKGV 759
Query: 159 -LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI-----GIL 212
LSGGQ++R+ +AR++ S L D+P + VD A H+ + G+ IL
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD--AHVGKHIFEHVIGPEGVLKNKTRIL 817
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+T H + L +D ++ G + G+ QE++
Sbjct: 818 VT-HGI-SYLPQVDVIIVMSGGKISEMGSYQELLQ 850
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 51.3 bits (123), Expect = 2e-07
Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL--ICADSGSIKIDGNDITKMPMYRR 97
+++G++L V+PGE+ ++GPNG+GK+T + G G+++ G D+ ++ R
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 98 ARLGI----SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153
A GI Y + + ++ + AV ++ R + D + ++ + K
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK--- 132
Query: 154 VLAPLL--------SGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
+ LL SGG+++R +I + V P +LDE +G+D
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 51.3 bits (123), Expect = 2e-07
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 28/224 (12%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V++ ++L V V L+G G+GK+T ++ G G I++DG ++ + + R
Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-HSVLR 414
Query: 100 LGISYLPQE-----ASIFRGLTV-----EENILAVLEVYEKDKKKRH--EKLDSLLKEFN 147
G++ + Q+ + +T+ EE + LE + + R + L + L E
Sbjct: 415 QGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQG 474
Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207
LS GQ++ L +AR LV P ++LDE A +D I + +
Sbjct: 475 NN---------LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH 525
Query: 208 GIGILITDHNVHEILTLIDRAYII--HAGGVLAHGTVQEIIDNQ 249
++I H + T+++ I+ H G + GT Q+++ Q
Sbjct: 526 TTLVVIA----HRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 51.0 bits (123), Expect = 3e-07
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
+LTK +++ + K ++L ++ GE + ++G NG GKTT + G + DSG++K
Sbjct: 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377
Score = 32.2 bits (74), Expect = 0.15
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 55 GLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
GL+G NG GK+TF ++ G + +G++ +D N+
Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE 64
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 50.1 bits (120), Expect = 5e-07
Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 37/226 (16%)
Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA------------DSGSIKIDGND 88
V GV L ++ G ++ L+G +G+GK+ L CA +G + +DG
Sbjct: 19 VHGVSLTLQRGRVLALVGGSGSGKS--------LTCAAALGILPAGVRQTAGRVLLDGKP 70
Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLT-----VEENILAVLEVYEKDKKKRHEKLDSLL 143
+ P R R + + S F L E LA+ K L + L
Sbjct: 71 VA--PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL------GKPADDATLTAAL 122
Query: 144 KEFNITKWRHVL---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
+ + VL +SGG +R+ IA +L+ +I+ DEP +D VA + I L
Sbjct: 123 EAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182
Query: 201 IRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ + R +G+L+ H++ + L D ++ G ++ G V+ +
Sbjct: 183 LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 50.1 bits (120), Expect = 6e-07
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 49/232 (21%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98
++ V+ +KPG+++G+ GP G+GK+T ++ G I+ +TK+ + R+
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 99 RLGI-SYLP---------------------QEASIFRGLTVEENILAVLEVYEKDKKKRH 136
RL + S P + + R +V ++IL + + Y+ + +R
Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGER- 448
Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
+LSGGQ++R+ IAR+L+ ++LD+ + VD
Sbjct: 449 -------------------GVMLSGGQKQRISIARALLLNAEILILDDALSAVDG---RT 486
Query: 197 IHVLIRDLASRGIG--ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
H ++ +L G G ++I+ H + LT ++ G + G ++
Sbjct: 487 EHQILHNLRQWGEGRTVIISAHRL-SALTEASEILVMQHGHIAQRGNHDQLA 537
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 48.1 bits (114), Expect = 2e-06
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 78 DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137
+SG I +DG DI + + R S + QE +F +++ ENI E ++ KR
Sbjct: 1275 NSGKILLDGVDICDYNL-KDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDATREDVKRAC 1332
Query: 138 K---LDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
K +D ++ K+ + P LSGGQ++R+ IAR+L+ P +LLDE + +D
Sbjct: 1333 KFAAIDEFIESLP-NKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391
Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYII-------HAGGVLAHGTVQE 244
+ I I D+ + +IT H I ++ I+ V AHGT +E
Sbjct: 1392 NSEKLIEKTIVDIKDKADKTIITI--AHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449
Query: 245 IIDNQD 250
++ QD
Sbjct: 1450 LLSVQD 1455
Score = 36.2 bits (83), Expect = 0.008
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
A LSGGQ++R+ IAR+++ P ++LDE + +D
Sbjct: 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 46.7 bits (111), Expect = 6e-06
Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 65/178 (36%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
+ PG+ VGL+G NG GK+T ++ I AD GS GN ++++ Q
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN------------WQLAWVNQ 71
Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKR---------------------HEKLDSLLKEF 146
E T A+ V + D++ R H KLD+
Sbjct: 72 E-------TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDA----- 119
Query: 147 NITKW--RHVLAPLL-----------------SGGQRRRLEIARSLVSFPSYILLDEP 185
I W R A LL SGG R RL +A++L+ +LLDEP
Sbjct: 120 -IDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Score = 44.4 bits (105), Expect = 3e-05
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 22/224 (9%)
Query: 15 FQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
F+ + + LL ++ Y ++ + L + PG +GLLG NGAGK+T ++ G
Sbjct: 302 FRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361
Query: 75 ICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK 134
+ SG I + + +LG Y Q F L +E+ L L ++
Sbjct: 362 LAPVSGEIG----------LAKGIKLG--YFAQHQLEF--LRADESPLQHLA--RLAPQE 405
Query: 135 RHEKLDSLLKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
+KL L F + V SGG++ RL +A + P+ +LLDEP +D
Sbjct: 406 LEQKLRDYLGGFGF-QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD-- 462
Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
+ L L +++ H+ H + + D Y++H G V
Sbjct: 463 -LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 46.1 bits (110), Expect = 8e-06
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 23 DSLLSACSLTKKYN----------SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT 72
LL A L K Y V + GV ++ G+ + ++G +G GK+T ++T
Sbjct: 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT 62
Query: 73 GLICADSGSIKIDGNDITKMP----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY 128
+ G + G D+ K R ++ I + S+ V + + L +
Sbjct: 63 MIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN 122
Query: 129 EK-DKKKRHEKLDSL-----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILL 182
+R EK ++ L+ + ++ H + SGGQR+R+ IAR+L+ P ++
Sbjct: 123 TSLSAAERREKALAMMAKVGLRPEHYDRYPH----MFSGGQRQRIAIARALMLDPDVVVA 178
Query: 183 DEPFAGVD 190
DEP + +D
Sbjct: 179 DEPVSALD 186
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 45.7 bits (108), Expect = 1e-05
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 11/198 (5%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103
+DL + G+IV ++G NG GK+T + GL G I +DG ++ A
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS-------ADSRDD 413
Query: 104 YLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE--FNITKWRHVLAPLLSG 161
Y ++IF + ++++ E + L L I LS
Sbjct: 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473
Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRDLASRGIGILITDHNVHE 220
GQ++RL + + + +L DE A DP + L+ DL +G I+I H+ +
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD-DQ 532
Query: 221 ILTLIDRAYIIHAGGVLA 238
L D+ + AG ++
Sbjct: 533 YFELADQIIKLAAGCIVK 550
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 43.7 bits (103), Expect = 5e-05
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 14 EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG 73
E++ R +K+ + A K + + + + L G+++GL+G NG+GK+T ++ G
Sbjct: 13 EYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG 72
Query: 74 LICADSGSIKIDGN 87
+ G + +G
Sbjct: 73 SLSPTVGKVDRNGE 86
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 41.8 bits (98), Expect = 2e-04
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEA 109
P I + G NG GK++ M+ G++ SG+I +I + A+ +Y+
Sbjct: 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-----AKPYCTYIGHNL 79
Query: 110 SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEI 169
+ +TV EN+ E+Y E L + + F + LS G ++ + I
Sbjct: 80 GLKLEMTVFENLKFWSEIYNSA-----ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAI 134
Query: 170 ARSLVSFPSYILLDE 184
AR + LLDE
Sbjct: 135 ARLIACQSDLWLLDE 149
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 41.4 bits (97), Expect = 2e-04
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 39/179 (21%)
Query: 76 CADSGSIKIDGNDITKMPMYRRARLGISYLPQEASI-FRGLTVEENILAVLEV--YEKDK 132
C GSI N T +P + LG +LPQ + ++G +NI +LE+ YE +K
Sbjct: 726 CQGLGSITTTDNR-TSIPC--PSCLGKRFLPQVLEVRYKG----KNIADILEMTAYEAEK 778
Query: 133 -----KKRHEKLDSL----LKEFNITKWRHVLAPL--LSGGQRRRLEIARSL---VSFPS 178
HEK+ +L L + + PL LSGG+ +RL++A L P+
Sbjct: 779 FFLDEPSIHEKIHALCSLGLDYLPLGR------PLSSLSGGEIQRLKLAYELLAPSKKPT 832
Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLAS---RGIGILITDHNVHEILTLIDRAYIIHAG 234
+LDEP G+ DI LI L S +G ++I +HN+H ++ + D Y++ G
Sbjct: 833 LYVLDEPTTGLH---THDIKALIYVLQSLTHQGHTVVIIEHNMH-VVKVAD--YVLELG 885
Score = 41.0 bits (96), Expect = 3e-04
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
Query: 159 LSGGQRRRLEIARSL---VSFPSYILLDEPFAGVDPVAISDIHVL---IRDLASRGIGIL 212
LSGG++ R +A+ L + +YIL DEP G+ P D H L I+ L +G +L
Sbjct: 477 LSGGEQERTALAKHLGAELIGITYIL-DEPSIGLHP---QDTHKLINVIKKLRDQGNTVL 532
Query: 213 ITDHNVHEILTLIDRAYI------IHAGGVLAHGTVQEIIDNQD 250
+ +H+ ++++L DR I G VL +G+ +E + D
Sbjct: 533 LVEHD-EQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSD 575
Score = 36.7 bits (85), Expect = 0.007
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 159 LSGGQRRRLEIARSLV---SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215
LS ++ ++IA+ L P+ LLDE +D S + V +R L S G ++ D
Sbjct: 1700 LSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759
Query: 216 HNVHEILTLIDRA-YIIHAG 234
H+ L+ +A Y+I G
Sbjct: 1760 HDPA----LLKQADYLIEMG 1775
Score = 31.7 bits (72), Expect = 0.22
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 159 LSGGQRRRLEIARSLVSFPSYI--LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216
LS G+ RL +A+ + S + I LL++P +G+ P + LI++L + ++ TD
Sbjct: 1388 LSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDR 1447
Query: 217 N 217
+
Sbjct: 1448 S 1448
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 39.7 bits (93), Expect = 8e-04
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
V G + + GPNG GK++ F ++ L G + A+ + Y+PQ
Sbjct: 475 VPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP------------AKGKLFYVPQ 522
Query: 108 EASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKWRHVL----------- 155
+ G T+ + I+ + K + + L+ +L +T H+L
Sbjct: 523 RPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT---HILEREGGWSAVQD 578
Query: 156 -APLLSGGQRRRLEIARSLVSFPSYILLDE 184
+LSGG+++R+ +AR P + +LDE
Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDE 608
>gnl|CDD|162972 TIGR02680, TIGR02680, conserved hypothetical protein TIGR02680.
Members of this protein family belong to a conserved gene
four-gene neighborhood found sporadically in a
phylogenetically broad range of bacteria: Nocardia
farcinica, Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length.
Length = 1353
Score = 35.9 bits (83), Expect = 0.011
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 20/72 (27%)
Query: 150 KWRHVLAPL--LSGGQRRRLEIARSLVSF---------------PSYILLDEPFAGVDPV 192
+WR + SGG+R +A + F P ILLDE FAGVD
Sbjct: 1237 QWRPLTHRFGPASGGERA---LALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDN 1293
Query: 193 AISDIHVLIRDL 204
A + + L+R L
Sbjct: 1294 ARAHLFGLLRAL 1305
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 35.5 bits (82), Expect = 0.014
Identities = 51/235 (21%), Positives = 101/235 (42%), Gaps = 36/235 (15%)
Query: 41 VKGVD---LYVKPGEIVGLLGPNGAGKTTFFYMMTGL------ICADSGSIKIDGNDITK 91
VK VD + + GEI GL+G +G+GK+ + G+ + AD ++ D D+ +
Sbjct: 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD--RMRFDDIDLLR 77
Query: 92 M-PMYRRARLG--ISYLPQE--------ASIFRGLTVEENILAVLEVYEKDK-----KKR 135
+ P RR +G +S + QE + R L + + K + R
Sbjct: 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQL-----MQNIPGWTYKGRWWQRFGWR 132
Query: 136 HEKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
+ LL I + + L+ G+ +++ IA +L + P ++ DEP ++P
Sbjct: 133 KRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPT 192
Query: 193 AISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+ I L+ L + IL+ H++ + D+ +++ G + +E++
Sbjct: 193 TQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 34.7 bits (79), Expect = 0.022
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK-IDGNDITKMPMYRRARLGI 102
PGE++ ++GP G+GKTT + + G + IDG DI + + + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV 54
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 34.6 bits (80), Expect = 0.028
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
Query: 159 LSGGQRRRLEIARSLVSFPSYIL--LDEPFAGVDPVAISDIHVLI------RDLASRGIG 210
LSGG+ +R+ +A + S + +L LDEP G+ D LI RDL G
Sbjct: 488 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQ---RDNERLINTLKRLRDL---GNT 541
Query: 211 ILITDHNVHEILT---LID---RAYIIHAGGVLAHGTVQEIIDNQD-VRRLYLGDRF 260
+++ +H+ I +ID A I H G V+A GT +EI+ N D + YL +
Sbjct: 542 VIVVEHDEETIRAADYVIDIGPGAGI-HGGEVVASGTPEEILANPDSLTGQYLSGKK 597
>gnl|CDD|152834 pfam12399, BCA_ABC_TP_C, Branched-chain amino acid ATP-binding
cassette transporter. This domain family is found in
bacteria, archaea and eukaryotes, and is approximately
30 amino acids in length. The family is found in
association with pfam00005. There is a conserved AYLG
sequence motif. This family is the C terminal of an ATP
dependent branched-chain amino acid transporter.
Length = 23
Score = 33.3 bits (78), Expect = 0.061
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 236 VLAHGTVQEIIDNQDVRRLYLG 257
V+A GT E+ + V YLG
Sbjct: 2 VIAEGTPAEVRADPAVIEAYLG 23
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 33.3 bits (76), Expect = 0.067
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 53 IVGLLGPNGAGKTTF------FYMMTGLICADS---GSIKIDGN 87
+VG+ GP+GAGKT F F +I D+ S IDGN
Sbjct: 67 LVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGN 110
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 31.8 bits (73), Expect = 0.17
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 47 YVKPGEIVGLLGPNGAGKTT 66
++ G+ V LLG +G GK+T
Sbjct: 191 WLSGGKTVALLGSSGVGKST 210
>gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 30.6 bits (70), Expect = 0.48
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 174 VSFPSYILLDEPFAGVDPV-----AISDIHVLIRDLASRGIGILITDH 216
S +L DE AG DP AIS ++ L RG I+ T H
Sbjct: 405 ADKNSLVLFDELGAGTDPDEGAALAIS----ILEYLRKRGAKIIATTH 448
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 29.6 bits (66), Expect = 0.73
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS-IKIDGNDITKMPMYRRA 98
V+ D + E +G+L G+GKTT ++ GL D G I + G+ +
Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------- 53
Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131
L + I GLT EEN + +Y D
Sbjct: 54 ------LGANSFILPGLTGEENARMMASLYGLD 80
>gnl|CDD|180463 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 29.7 bits (67), Expect = 0.88
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 46 LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG 86
L K ++VGLLGP GKT M +C +IKI G
Sbjct: 150 LARKDSKVVGLLGPGVMGKTILAAFMA--VCPGIDTIKIKG 188
>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 29.5 bits (67), Expect = 0.92
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 48 VKPGEIVGLLGPNGAGKTT 66
+K G +V L+GP G GKTT
Sbjct: 218 LKQGGVVALVGPTGVGKTT 236
>gnl|CDD|139425 PRK13248, PRK13248, phycoerythrobilin:ferredoxin oxidoreductase;
Provisional.
Length = 253
Score = 28.7 bits (64), Expect = 1.5
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 11/53 (20%)
Query: 163 QRRRLEIARSL-VSFPSYILLD----------EPFAGVDPVAISDIHVLIRDL 204
++R++ AR++ ++ P+Y +L+ PF GVD V++ + H+L+ D
Sbjct: 65 HKKRIQFARAVCINSPNYSVLNFLIIPNTIYNVPFFGVDFVSLPNSHLLVLDF 117
>gnl|CDD|178749 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 28.7 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 53 IVGLLGPNGAGKTTFF-YMMTGLICADSGSIKIDGNDITK-MPMYRRARL 100
+VG+ G +G GKTT + + L S+ ID I+K M +Y A
Sbjct: 209 MVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANP 258
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 28.4 bits (63), Expect = 1.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 51 GEIVGLLGPNGAGKTT 66
G ++ L+GP GAGKTT
Sbjct: 350 GGVIALVGPTGAGKTT 365
>gnl|CDD|162206 TIGR01110, mdcA, malonate decarboxylase, alpha subunit. This model
describes malonate decarboxylase alpha subunit, from
both the water-soluble form as found in Klebsiella
pneumoniae and the form couple to sodium ion pumping in
Malonomonas rubra. Malonate decarboxylase Na+ pump is
the paradigm of the family of Na+ transport
decarboxylases. Essentially, it couples the energy
derived from decarboxylation of a carboxylic acid
substrate to move Na+ ion across the bilayer. Functional
malonate decarboylase is a multi subunit protein. The
alpha subunit enzymatically performs the transfer of
malonate (substrate) to an acyl carrier protein subunit
for subsequent decarboxylation, hence the name:
acetyl-S-acyl carrier protein:malonate carrier
protein-SH transferase.
Length = 543
Score = 28.7 bits (64), Expect = 1.8
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 166 RLEIARSLVSF------PSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
R++I S V F P YI EP DP I+D+ VL+ +A +GI
Sbjct: 190 RVDIPASWVDFVIESPKPFYI---EPLFTRDPANITDVQVLMAMMAIKGI 236
>gnl|CDD|117805 pfam09259, Fve, Fungal immunomodulatory protein Fve. Fve is a
major fruiting body protein from Flammulina velutipes,
a mushroom possessing immunomodulatory activity. It
stimulates lymphocyte mitogenesis, suppresses systemic
anaphylaxis reactions and oedema, enhances
transcription of IL-2, IFN-gamma and TNF-alpha, and
haemagglutinates red blood cells. It appears to be a
lectin with specificity for complex cell-surface
carbohydrates. Fve adopts a tertiary structure
consisting of an immunoglobulin-like beta-sandwich,
with seven strands arranged in two beta sheets, in a
Greek-key topology. It forms a non-covalently linked
homodimer containing no Cys, His or Met residues;
dimerization occurs by 3-D domain swapping of the
N-terminal helices and is stabilized predominantly by
hydrophobic interactions.
Length = 111
Score = 28.5 bits (63), Expect = 2.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
K Y+ V G DL V+P V P+G K F G AD+ +I++
Sbjct: 45 KAYSYRVAVNGRDLGVEPNFAV---EPDGGQKINFLEYNKGYGIADTKTIQV 93
>gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 28.0 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYII 231
LI+++ RG+G T H++ I L R Y+I
Sbjct: 482 LIKEMEKRGLGTKATRHDI--IEKLYKRGYVI 511
>gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD.
This model describes the DndB protein encoded by an
operon associated with a sulfur-containing modification
to DNA. The operon is sporadically distributed in
bacteria, much like some restriction enzyme operons.
DndD is described as a putative ATPase. The small
number of examples known so far include species from
among the Firmicutes, Actinomycetes, Proteobacteria,
and Cyanobacteria.
Length = 650
Score = 28.1 bits (63), Expect = 2.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 44 VDLYVKPGEIVGLLGP-NGAGKTTF 67
DL + + L+G NGAGKTT
Sbjct: 20 FDLSPSSPKPIILIGGLNGAGKTTL 44
>gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 27.8 bits (62), Expect = 3.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICAD---SGSIKID 85
P ++G+ P G GKTT + + L A + S+ ID
Sbjct: 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSID 137
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 27.6 bits (62), Expect = 3.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 46 LYVKPGE--IVGLLGPNGAGKTTF 67
L +P IVG+ GP GAGK+T
Sbjct: 26 LQAEPQRRTIVGIAGPPGAGKSTL 49
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. This
family represents the SMC protein of most bacteria. The
smc gene is often associated with scpB (TIGR00281) and
scpA genes, where scp stands for segregation and
condensation protein. SMC was shown (in Caulobacter
crescentus) to be induced early in S phase but present
and bound to DNA throughout the cell cycle.
Length = 1179
Score = 27.7 bits (62), Expect = 3.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 50 PGEIVGLLGPNGAGKT 65
I G++GPNG GK+
Sbjct: 22 DKGITGIVGPNGCGKS 37
>gnl|CDD|149646 pfam08659, KR, KR domain. This enzymatic domain is part of
bacterial polyketide synthases and catalyses the first
step in the reductive modification of the beta-carbonyl
centres in the growing polyketide chain. It uses NADPH
to reduce the keto group to a hydroxy group.
Length = 181
Score = 27.1 bits (61), Expect = 4.5
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 167 LEIARSLV-SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL-----ITDHN-VH 219
LE+AR L +++L DP A + L+ +L +RG + ++D + V
Sbjct: 14 LELARWLAERGARHLVLLSRSGAPDPEAEA----LLAELEARGAEVTVVACDVSDRDAVA 69
Query: 220 EILTLIDRAY-----IIHAGGVLAHGTVQE 244
+L I +IHA GVL +
Sbjct: 70 ALLAEIRADGPPLRGVIHAAGVLRDALLAN 99
>gnl|CDD|181948 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 27.0 bits (60), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 54 VGLLGPNGAGKTTFFYMMTG 73
+GL+G +GKTT F +TG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTG 25
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed.
Length = 437
Score = 27.0 bits (60), Expect = 5.1
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 80 GSIKIDGNDITKMPMYRRAR------LGISYL-PQEASIFRGLTVEE 119
GS+ ID ++T AR ISYL PQE FRG T+ E
Sbjct: 26 GSVVID--EVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPE 70
>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 26.8 bits (60), Expect = 5.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 23/76 (30%)
Query: 54 VGLLGPNGAGKTT-----FFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQE 108
+G+L AGKTT FY TG I G ++ DG +T ++PQE
Sbjct: 11 IGILAHIDAGKTTLTERILFY--TGKIHK-MGEVE-DGTTVT------------DWMPQE 54
Query: 109 ASIFRGLTVEENILAV 124
RG+T+E +
Sbjct: 55 QE--RGITIESAATSC 68
>gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated.
Length = 226
Score = 26.9 bits (60), Expect = 5.7
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
P +V L GP G+GKT + S ++ I N+I
Sbjct: 43 PSPVVVLAGPVGSGKTHL----ASIWREKSDALLIHPNEIG 79
>gnl|CDD|179887 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 26.5 bits (59), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 7/27 (25%)
Query: 53 IVGLLGPNGAGKTT----FFYMMTGLI 75
+ L G NGAGK+T F +T LI
Sbjct: 29 VTTLSGGNGAGKSTTMAAF---VTALI 52
>gnl|CDD|172383 PRK13862, PRK13862, putative crown gall tumor protein VirC2;
Provisional.
Length = 201
Score = 26.4 bits (58), Expect = 7.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 157 PLLSGGQRRRLEIARSLVSFPS 178
P LS G+ RRL AR + P
Sbjct: 6 PALSVGEARRLAAARPEIVHPE 27
>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 26.7 bits (60), Expect = 7.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 53 IVGLLGPNGAGKT 65
+ L+G NG GKT
Sbjct: 25 VNVLVGENGQGKT 37
>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF.
Length = 282
Score = 26.5 bits (59), Expect = 7.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 51 GEIVGLLGPNGAGKTT 66
G ++ L+GP G GKTT
Sbjct: 194 GGVIALVGPTGVGKTT 209
>gnl|CDD|182554 PRK10565, PRK10565, putative carbohydrate kinase; Provisional.
Length = 508
Score = 26.6 bits (59), Expect = 7.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 23 DSLLSACSLTKKYNSVYVVKG 43
D LLSA L K+Y V V+KG
Sbjct: 393 DRLLSARRLVKRYGGVVVLKG 413
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 26.2 bits (59), Expect = 8.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 231 IHAGGVLAHGTVQEIIDNQD 250
+H G V+A GT +EI+ N +
Sbjct: 569 VHGGEVVASGTPEEIMKNPN 588
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function.
Length = 771
Score = 26.3 bits (58), Expect = 8.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 121 ILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
++ L EK+ ++++E L+ LLKE K
Sbjct: 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLK 545
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1311
Score = 26.2 bits (57), Expect = 8.7
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 56 LLGPNGAGKTTFF----YMMTG 73
L+GPNGAGKTT Y+ TG
Sbjct: 33 LVGPNGAGKTTIIECLKYICTG 54
>gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 26.3 bits (58), Expect = 9.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 51 GEIVGLLGPNGAGKTT 66
G ++ L+GP G GKTT
Sbjct: 185 GGVLALVGPTGVGKTT 200
>gnl|CDD|179166 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.
Length = 513
Score = 26.2 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 231 IHAGGVLAHGTVQEIIDNQDV----RRLYLG 257
IH GVL + EI+ + V RL LG
Sbjct: 299 IHQDGVLKNRETYEIMTPESVGLKANRLVLG 329
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.141 0.406
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,428,543
Number of extensions: 294254
Number of successful extensions: 1470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1204
Number of HSP's successfully gapped: 343
Length of query: 262
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,006,537
Effective search space: 681111290
Effective search space used: 681111290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)