HHsearch results for GI: 254780745 and protein with PDBid: 3my2_A
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli}
Probab=98.81 E-value=2.5e-07 Score=57.01 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=99.2
Q ss_pred CCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE-E--CC--EEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 4457778479991169999238879998008999-7--87--59999689999617665444200122201222024556
Q gi|254780745|r 37 FKVLGNEKIHIKADMLEVKDAVQKAFFKGNVFMT-Q--ED--FSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGE 111 (181)
Q Consensus 37 ~~~d~~~Pi~I~AD~~~~d~~~~~~~~~GNV~i~-q--g~--~~i~aD~l~i~~~~~~~~~~~~i~~~~a~gnv~~~~~~ 111 (181)
+..+...-.+|+|++++.....+.+.+..-+... . |. ..|+||+..++ +. ..+...|||.+....
T Consensus 36 ~d~~G~l~~~l~A~~~~~~~~~~~~~l~~P~~~~~~~~~~~~w~itA~~g~~~-~~---------~~l~L~gnV~i~~~~ 105 (175)
T 3my2_A 36 YNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAKLT-ND---------RMLYLYGHVEVNALV 105 (175)
T ss_dssp -------CEEEECSSEEEETTTTEEEEESCEEEEECTTCCEEEEEECSEEEEC-TT---------SEEEEEEEEEEEECS
T ss_pred ECCCCCEEEEEECCHHEECCCCCCEEEECCEEEEECCCCCCEEEEEECEEEEC-CC---------CEEEEECEEEEEECC
T ss_conf 99999899999916314214889648825599997489982299993858987-99---------689996409999637
Q ss_pred -----CCEEEEEEEEECCCCEEEEEECCCCEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCEEEEEEECCCC
Q ss_conf -----533211279941665899994786349997179769922999992165899992899809999811876
Q gi|254780745|r 112 -----INVIASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGCESDQVQSIIRYDGR 180 (181)
Q Consensus 112 -----~~~~a~~~~y~~~~~~~~l~Gna~~~v~l~q~~~~i~gdki~yn~~tg~~~~~g~~~~rV~~i~~~~~r 180 (181)
..+.++.+.|++.++.+.-.+. |.+++++..++|..+.+|++++.+++.| +|++.+.+.+|
T Consensus 106 ~~~~~~~l~T~~L~~~~~~~~~~td~~----V~i~~~~~~~~g~gm~~~l~~~~~~l~~----~Vk~~ye~~~~ 171 (175)
T 3my2_A 106 PDSQLRRITTDNAQINLVTQDVTSEDL----VTLYGTTFNSSGLKMRGNLRSKNAELIE----KVRTSYEIQNK 171 (175)
T ss_dssp SSCSEEEEEEEEEEEETTTCEEEEEEE----EEEEESSCEEEEEEEEEETTTTEEEEEE----EEEETTCC---
T ss_pred CCCCCEEEEEEEEEEEECCCEEEECCC----EEEECCCCEEEEEEEEEECCCCEEEEEC----CEEEEEECCCC
T ss_conf 888746999815999915679994884----9999299699977899996389999940----62899928866