Query gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 181
No_of_seqs 112 out of 1078
Neff 8.1
Searched_HMMs 13730
Date Wed Jun 1 08:45:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780745.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hz6a_ d.15.7.1 (A:) Immunogl 10.0 38 0.0028 11.3 1.0 22 44-65 6-27 (67)
2 d2caya1 b.55.1.12 (A:1-99,A:25 7.0 50 0.0036 10.7 0.2 10 72-81 45-54 (130)
3 d1ueba3 b.40.4.5 (A:127-184) E 6.2 58 0.0042 10.3 1.5 14 149-162 42-55 (58)
4 d1mhhe_ d.15.7.1 (E:) Immunogl 5.4 65 0.0047 10.1 0.9 10 55-64 12-21 (63)
5 d2tnfa_ b.22.1.1 (A:) Tumor ne 4.0 88 0.0064 9.4 -0.1 36 50-85 16-51 (148)
6 d2k57a1 b.38.1.6 (A:2-53) Unch 3.9 96 0.007 9.2 3.4 28 142-169 10-37 (52)
7 d1n9wa1 b.40.4.1 (A:1-93) Aspa 3.8 98 0.0072 9.1 3.7 35 39-77 10-44 (93)
8 d1ftra1 d.58.33.1 (A:1-148) Fo 3.5 1.1E+02 0.008 8.8 0.5 5 177-181 67-71 (148)
9 d1m5sa1 d.58.33.1 (A:1-145) Fo 3.5 1.1E+02 0.0081 8.8 0.5 5 177-181 66-70 (145)
10 d1es5a_ e.3.1.1 (A:) D-ala car 3.3 1.2E+02 0.0086 8.7 1.4 23 43-66 1-24 (260)
No 1
>d1hz6a_ d.15.7.1 (A:) Immunoglobulin light chain-binding domain of protein L {Peptostreptococcus magnus [TaxId: 1260]}
Probab=10.04 E-value=38 Score=11.33 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=11.3
Q ss_pred CEEEEEEEEEEECCCCEEEEEE
Q ss_conf 4799911699992388799980
Q gi|254780745|r 44 KIHIKADMLEVKDAVQKAFFKG 65 (181)
Q Consensus 44 Pi~I~AD~~~~d~~~~~~~~~G 65 (181)
.+.|.++-+..|.+.+.++|.|
T Consensus 6 eVTIK~NlifadG~tQtAeFKG 27 (67)
T d1hz6a_ 6 EVTIKANLIFANGSTQTAEFKG 27 (67)
T ss_dssp CEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEEEEECCCCEEEEEEEE
T ss_conf 2788888998179588888721
No 2
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.00 E-value=50 Score=10.71 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=4.5
Q ss_pred CCEEEEEEEE
Q ss_conf 8759999689
Q gi|254780745|r 72 EDFSLQADKM 81 (181)
Q Consensus 72 g~~~i~aD~l 81 (181)
|...|+.-++
T Consensus 45 G~l~LTshRi 54 (130)
T d2caya1 45 GRIFLTSQRI 54 (130)
T ss_dssp EEEEEESSEE
T ss_pred CEEEEEEEEE
T ss_conf 5599873279
No 3
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=6.19 E-value=58 Score=10.35 Aligned_cols=14 Identities=21% Similarity=0.076 Sum_probs=10.6
Q ss_pred EEEEEEEECCCEEE
Q ss_conf 22999992165899
Q gi|254780745|r 149 GCKLIVNIDTSFAS 162 (181)
Q Consensus 149 gdki~yn~~tg~~~ 162 (181)
||+|.+|..+|...
T Consensus 42 Gd~I~VdT~~g~Y~ 55 (58)
T d1ueba3 42 GEVIKVDTRTGEYV 55 (58)
T ss_dssp TCEEEEETTTTEEE
T ss_pred CCEEEEECCCCEEE
T ss_conf 99999989997674
No 4
>d1mhhe_ d.15.7.1 (E:) Immunoglobulin light chain-binding domain of protein L {Peptostreptococcus magnus [TaxId: 1260]}
Probab=5.44 E-value=65 Score=10.09 Aligned_cols=10 Identities=40% Similarity=0.494 Sum_probs=3.2
Q ss_pred ECCCCEEEEE
Q ss_conf 9238879998
Q gi|254780745|r 55 KDAVQKAFFK 64 (181)
Q Consensus 55 d~~~~~~~~~ 64 (181)
|.+.+.++|.
T Consensus 12 dG~tQtAeFk 21 (63)
T d1mhhe_ 12 DGKIQTAEFK 21 (63)
T ss_dssp TSCEEEEEEE
T ss_pred CCCEEEEEEE
T ss_conf 7958888873
No 5
>d2tnfa_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.05 E-value=88 Score=9.36 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=26.0
Q ss_pred EEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEEE
Q ss_conf 169999238879998008999787599996899996
Q gi|254780745|r 50 DMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDY 85 (181)
Q Consensus 50 D~~~~d~~~~~~~~~GNV~i~qg~~~i~aD~l~i~~ 85 (181)
+.+.|+.+.+.+...+.+....|.++|.-+=+.+-|
T Consensus 16 ~~l~W~~~~g~a~~~~g~~~~~g~L~V~~~G~YyVY 51 (148)
T d2tnfa_ 16 EQLEWLSQRANALLANGMDLKDNQLVVPADGLYLVY 51 (148)
T ss_dssp TCCCEESCSTTCEEETTCEEETTEEECSSSEEEEEE
T ss_pred CCCCEECCCCCCCEECCEEEECCEEEECCCEEEEEE
T ss_conf 845453388872002886997898997777089999
No 6
>d2k57a1 b.38.1.6 (A:2-53) Uncharacterized protein PSPPH2109 {Pseudomonas syringae [TaxId: 317]}
Probab=3.90 E-value=96 Score=9.16 Aligned_cols=28 Identities=4% Similarity=-0.025 Sum_probs=12.1
Q ss_pred ECCCEEEEEEEEEEECCCEEEEEECCCC
Q ss_conf 1797699229999921658999928998
Q gi|254780745|r 142 EKLNTFLGCKLIVNIDTSFASLQGCESD 169 (181)
Q Consensus 142 q~~~~i~gdki~yn~~tg~~~~~g~~~~ 169 (181)
+|...++-++=-||.++|-...+...++
T Consensus 10 dGr~i~T~gkP~~d~dtG~y~y~d~~G~ 37 (52)
T d2k57a1 10 DGREIQAVDTPKYDEESGFYEFKQLDGK 37 (52)
T ss_dssp SSCEEEESSCCEECTTTCEEEEEBTTSC
T ss_pred CCCEEECCCCCCCCCCCCCEEEECCCCC
T ss_conf 9838982898620278887998868998
No 7
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=3.82 E-value=98 Score=9.10 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=15.4
Q ss_pred CCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEE
Q ss_conf 577784799911699992388799980089997875999
Q gi|254780745|r 39 VLGNEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQ 77 (181)
Q Consensus 39 ~d~~~Pi~I~AD~~~~d~~~~~~~~~GNV~i~qg~~~i~ 77 (181)
..-.+.+.|..=-... +..+...| +.+..+...++
T Consensus 10 ~~~g~~V~v~GwV~~~-R~~gk~~F---i~LrD~sg~iQ 44 (93)
T d1n9wa1 10 AHVGQEVELLGFLHWR-RDLGRIQF---LLLRDRSGVVQ 44 (93)
T ss_dssp GCTTSEEEEEEEEEEE-EECSSEEE---EEEEETTEEEE
T ss_pred HCCCCEEEEEEEEEEE-EECCCCEE---EEEECCCCCCE
T ss_conf 5279999998999937-82798099---99983985243
No 8
>d1ftra1 d.58.33.1 (A:1-148) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=3.47 E-value=1.1e+02 Score=8.83 Aligned_cols=5 Identities=80% Similarity=1.364 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 18769
Q gi|254780745|r 177 YDGRP 181 (181)
Q Consensus 177 ~~~r~ 181 (181)
|||||
T Consensus 67 PDGRP 71 (148)
T d1ftra1 67 PDGRP 71 (148)
T ss_dssp TTSSC
T ss_pred CCCCC
T ss_conf 99988
No 9
>d1m5sa1 d.58.33.1 (A:1-145) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=3.46 E-value=1.1e+02 Score=8.82 Aligned_cols=5 Identities=80% Similarity=1.364 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 18769
Q gi|254780745|r 177 YDGRP 181 (181)
Q Consensus 177 ~~~r~ 181 (181)
|||||
T Consensus 66 PDGRP 70 (145)
T d1m5sa1 66 PDGRP 70 (145)
T ss_dssp TTSSC
T ss_pred CCCCC
T ss_conf 99988
No 10
>d1es5a_ e.3.1.1 (A:) D-ala carboxypeptidase/transpeptidase {Streptomyces sp., K15 [TaxId: 1931]}
Probab=3.28 E-value=1.2e+02 Score=8.66 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCEEEEEEE-EEEECCCCEEEEEEE
Q ss_conf 847999116-999923887999800
Q gi|254780745|r 43 EKIHIKADM-LEVKDAVQKAFFKGN 66 (181)
Q Consensus 43 ~Pi~I~AD~-~~~d~~~~~~~~~GN 66 (181)
|| +|.|.. +.+|..+|.+.|.-|
T Consensus 1 ~P-~i~A~~aiv~D~~tG~vL~~kn 24 (260)
T d1es5a_ 1 KP-TIAAVGGYAMNNGTGTTLYTKA 24 (260)
T ss_dssp CC-CCSCSEEEEEETTTCCEEEEES
T ss_pred CC-CCCCEEEEEEECCCCCEEEEEC
T ss_conf 99-7552489999999995934579
Done!